Wall clock time and date at job start Mon Mar 30 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48503 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47157 * 300.00277 * 3 2 1 6 6 H 1.48510 * 109.47199 * 59.99847 * 3 2 1 7 7 C 1.37881 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99690 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46761 * 179.97438 * 9 7 2 11 11 C 1.46956 * 111.00189 * 293.79626 * 10 9 7 12 12 C 1.53053 * 109.36400 * 176.81049 * 11 10 9 13 13 N 1.46952 * 109.36104 * 58.40540 * 12 11 10 14 14 C 1.46956 * 110.88449 * 300.67517 * 13 12 11 15 15 C 1.46958 * 110.99934 * 169.99879 * 10 9 7 16 16 H 1.08998 * 109.49021 * 63.19682 * 15 10 9 17 17 C 1.50706 * 109.48581 * 303.15711 * 15 10 9 18 18 C 1.38237 * 119.99761 * 140.00368 * 17 15 10 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00191 * 319.97469 * 17 15 10 23 23 H 0.97003 * 119.99977 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47358 * 59.99533 * 9 7 2 25 25 H 1.08997 * 109.47129 * 299.99517 * 9 7 2 26 26 H 1.08993 * 109.49043 * 296.78400 * 11 10 9 27 27 H 1.09004 * 109.48297 * 56.82239 * 11 10 9 28 28 H 1.09002 * 109.48628 * 178.37144 * 12 11 10 29 29 H 1.08997 * 109.48902 * 298.41675 * 12 11 10 30 30 H 1.00903 * 110.99970 * 176.80769 * 13 12 11 31 31 H 1.08999 * 109.48697 * 299.36170 * 14 13 12 32 32 H 1.08998 * 109.49553 * 179.28993 * 14 13 12 33 33 H 1.08005 * 120.00088 * 359.96779 * 18 17 15 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99990 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9687 -3.6563 -1.2548 12 6 4.0043 -4.7810 -1.1831 13 7 3.3196 -6.0592 -0.9448 14 6 2.5565 -6.0188 0.3105 15 6 1.5210 -4.8940 0.2388 16 1 0.8252 -5.0913 -0.5766 17 6 0.7639 -4.8239 1.5400 18 6 -0.4927 -5.3912 1.6399 19 6 -1.1869 -5.3274 2.8336 20 6 -0.6241 -4.6972 3.9276 21 6 0.6305 -4.1256 3.8264 22 6 1.3263 -4.1928 2.6338 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.2896 -3.8397 -2.0873 27 1 3.4763 -2.7030 -1.4027 28 1 4.5519 -4.8316 -2.1242 29 1 4.7000 -4.5832 -0.3677 30 1 3.9752 -6.8262 -0.9448 31 1 3.2356 -5.8352 1.1430 32 1 2.0486 -6.9718 0.4583 33 1 -0.9321 -5.8843 0.7853 34 1 -2.1688 -5.7702 2.9115 35 1 -1.1664 -4.6477 4.8603 36 1 1.0684 -3.6294 4.6798 37 1 2.3081 -3.7496 2.5557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313330898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:21 Heat of formation + Delta-G solvation = 14.298942 kcal Electronic energy + Delta-G solvation = -18167.271705 eV Core-core repulsion = 15522.211885 eV Total energy + Delta-G solvation = -2645.059820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.88599 -38.99948 -35.89732 -34.36286 -33.32485 -31.68982 -30.05204 -29.31462 -26.41407 -24.72965 -23.45909 -23.30039 -22.17676 -20.36723 -18.51909 -18.04338 -17.17355 -16.56721 -16.37224 -15.88110 -15.62383 -15.29353 -15.11972 -14.82689 -14.59527 -14.13264 -13.95800 -13.64744 -13.36557 -13.16854 -12.73491 -12.69547 -12.40757 -12.17758 -12.11950 -11.89672 -11.76287 -11.37757 -11.18376 -10.62400 -9.71981 -9.53081 -9.43920 -9.05183 -8.19945 -6.29814 0.52310 0.61401 1.38814 1.39263 1.52729 2.38828 2.93753 3.11851 3.21398 3.30318 3.93812 4.04247 4.09471 4.20899 4.26310 4.36380 4.37042 4.47465 4.49535 4.70594 4.76045 4.84342 4.93256 5.01524 5.06154 5.17329 5.23266 5.28436 5.32518 5.61668 5.63405 5.70035 5.82663 5.92649 6.07556 6.20864 6.31230 6.54781 6.63761 6.86583 7.39347 8.91415 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.009217 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.401158 B = 3037.074678 C = 4287.663813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.214 3.786 10 N -0.530 5.530 11 C 0.063 3.937 12 C 0.069 3.931 13 N -0.693 5.693 14 C 0.083 3.917 15 C 0.122 3.878 16 H 0.025 0.975 17 C -0.085 4.085 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.100 4.100 23 H 0.263 0.737 24 H -0.055 1.055 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.038 0.962 30 H 0.358 0.642 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.133 0.867 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -12.473 4.118 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.088 3.912 10 N -0.255 5.255 11 C -0.066 4.066 12 C -0.060 4.060 13 N -0.326 5.326 14 C -0.047 4.047 15 C 0.013 3.987 16 H 0.043 0.957 17 C -0.086 4.086 18 C -0.149 4.149 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.153 4.153 22 C -0.118 4.118 23 H 0.072 0.928 24 H -0.037 1.037 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.089 0.911 28 H 0.117 0.883 29 H 0.056 0.944 30 H 0.178 0.822 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.151 0.849 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.320 -12.139 4.090 13.233 hybrid contribution 0.102 1.106 -0.269 1.143 sum 3.423 -11.032 3.821 12.167 Atomic orbital electron populations 1.70118 1.07766 1.27641 1.51872 1.25901 0.95684 1.03111 0.94916 0.85366 0.79068 0.78723 0.77651 1.18560 1.20511 1.20482 1.21456 0.93477 0.90997 1.49802 0.91934 1.19328 0.90018 0.88631 0.93226 1.62269 1.26848 1.02236 1.34099 1.22054 0.95836 0.99014 0.89671 1.21962 0.94280 0.88223 1.01536 1.60425 1.31045 1.05703 1.35455 1.21853 0.94956 0.97273 0.90639 1.20573 0.94285 0.90842 0.93021 0.95740 1.19797 0.95283 0.98744 0.94758 1.21218 0.94083 1.00702 0.98923 1.21370 1.00487 0.99960 0.92575 1.21438 0.95325 0.97957 0.99734 1.21411 0.96016 1.00094 0.97805 1.21035 1.00482 0.97433 0.92870 0.92844 1.03731 0.96630 0.97033 0.91076 0.88342 0.94386 0.82181 0.94521 0.88960 0.85639 0.83531 0.83538 0.84860 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.52 -29.98 8.47 25.60 0.22 -29.76 16 8 H 0.06 3.53 7.13 -2.91 -0.02 3.51 16 9 C 0.21 11.85 4.36 85.56 0.37 12.22 16 10 N -0.53 -23.71 3.85 -879.42 -3.39 -27.09 16 11 C 0.06 2.54 5.43 86.31 0.47 3.01 16 12 C 0.07 2.08 6.72 86.31 0.58 2.66 16 13 N -0.69 -19.07 6.90 -513.45 -3.54 -22.62 16 14 C 0.08 2.49 5.98 86.31 0.52 3.00 16 15 C 0.12 4.70 2.16 44.18 0.10 4.79 16 16 H 0.02 1.03 8.00 -2.39 -0.02 1.02 16 17 C -0.08 -3.20 3.62 -19.86 -0.07 -3.27 16 18 C -0.13 -4.35 9.67 22.27 0.22 -4.13 16 19 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 20 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 21 C -0.14 -4.40 10.05 22.27 0.22 -4.18 16 22 C -0.10 -3.79 8.27 22.27 0.18 -3.61 16 23 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 24 H -0.05 -3.42 8.12 -2.39 -0.02 -3.44 16 25 H 0.02 0.93 6.00 -2.39 -0.01 0.92 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 27 H 0.07 3.06 6.79 -2.38 -0.02 3.05 16 28 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.36 7.37 8.90 -89.69 -0.80 6.57 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.13 3.76 8.04 -2.91 -0.02 3.74 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.11 4.52 7.72 -2.91 -0.02 4.50 16 Total: -1.00 -67.86 299.06 -0.66 -68.52 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.25 Total: 16.93 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 3.71 Total: -25.47 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -6.65 Total: -107.03 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.86 -0.66 -68.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313330898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.820 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds