Wall clock time and date at job start Mon Mar 30 2020 03:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48494 * 109.47550 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46992 * 300.00143 * 3 2 1 6 6 H 1.48498 * 109.47155 * 59.99625 * 3 2 1 7 7 C 1.39928 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00034 * 197.88647 * 7 2 1 9 9 C 1.41405 * 120.00207 * 17.88664 * 7 2 1 10 10 C 1.40792 * 120.20743 * 204.41529 * 9 7 2 11 11 C 1.37650 * 119.89233 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32544 * 359.97438 * 11 10 9 13 13 C 1.39290 * 120.42395 * 0.02562 * 12 11 10 14 14 N 1.39685 * 119.95289 * 180.02562 * 13 12 11 15 15 C 1.46502 * 119.99801 * 359.97438 * 14 13 12 16 16 C 1.52994 * 109.47322 * 180.02562 * 15 14 13 17 17 H 1.08999 * 110.33481 * 64.29617 * 16 15 14 18 18 C 1.54904 * 110.37682 * 186.55376 * 16 15 14 19 19 C 1.55254 * 101.60001 * 155.81730 * 18 16 15 20 20 C 1.54319 * 103.08786 * 324.48583 * 19 18 16 21 21 N 1.47443 * 107.22810 * 22.20655 * 20 19 18 22 22 C 1.38319 * 120.09761 * 359.97438 * 13 12 11 23 23 H 0.97003 * 119.99743 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.05295 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.83186 * 180.27406 * 11 10 9 26 26 H 1.07996 * 119.78751 * 180.02562 * 12 11 10 27 27 H 0.96995 * 120.00092 * 179.97438 * 14 13 12 28 28 H 1.09006 * 109.46785 * 300.00253 * 15 14 13 29 29 H 1.08999 * 109.47284 * 60.00157 * 15 14 13 30 30 H 1.09009 * 110.98799 * 273.99129 * 18 16 15 31 31 H 1.08997 * 110.98889 * 37.80221 * 18 16 15 32 32 H 1.09005 * 110.74129 * 206.05132 * 19 18 16 33 33 H 1.09001 * 110.76071 * 82.93255 * 19 18 16 34 34 H 1.09000 * 109.89267 * 262.80542 * 20 19 18 35 35 H 1.08995 * 110.02895 * 141.68624 * 20 19 18 36 36 H 1.00906 * 110.99892 * 123.25678 * 21 20 19 37 37 H 1.07999 * 120.16456 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8836 2.3964 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3521 -2.4067 -0.3772 10 6 1.8261 -3.6501 0.0826 11 6 1.1831 -4.8092 -0.2885 12 6 0.0706 -4.7589 -1.1123 13 6 -0.4098 -3.5360 -1.5750 14 7 -1.5327 -3.4967 -2.4049 15 6 -2.2039 -4.7411 -2.7885 16 6 -3.3946 -4.4201 -3.6941 17 1 -3.0512 -3.9742 -4.6275 18 6 -4.2165 -5.7019 -3.9789 19 6 -5.6116 -5.1097 -4.3156 20 6 -5.7111 -3.8919 -3.3730 21 7 -4.3351 -3.5111 -3.0049 22 6 0.2229 -2.3605 -1.2130 23 1 -0.4850 0.8401 0.0004 24 1 2.6928 -3.6944 0.7254 25 1 1.5448 -5.7622 0.0684 26 1 -0.4275 -5.6737 -1.3978 27 1 -1.8680 -2.6455 -2.7272 28 1 -1.5031 -5.3818 -3.3238 29 1 -2.5555 -5.2550 -1.8939 30 1 -3.8066 -6.2477 -4.8289 31 1 -4.2661 -6.3383 -3.0954 32 1 -6.3997 -5.8307 -4.0982 33 1 -5.6563 -4.7948 -5.3582 34 1 -6.2734 -4.1602 -2.4786 35 1 -6.2010 -3.0632 -3.8841 36 1 -4.1496 -2.5488 -3.2454 37 1 -0.1484 -1.4118 -1.5714 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313413668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:31 Heat of formation + Delta-G solvation = 15.798656 kcal Electronic energy + Delta-G solvation = -17256.693523 eV Core-core repulsion = 14611.698735 eV Total energy + Delta-G solvation = -2644.994787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.84293 -37.49257 -34.65064 -33.15812 -30.29988 -30.24531 -29.33597 -27.25304 -25.14375 -24.11013 -21.24259 -21.06068 -20.08577 -19.58855 -17.13718 -16.93789 -16.05654 -15.14799 -14.70542 -14.49307 -14.21309 -14.07895 -13.25792 -12.78872 -12.67633 -12.53613 -12.15708 -12.04885 -11.74691 -11.46404 -11.36474 -11.12963 -10.96353 -10.85230 -10.81368 -10.48366 -10.32182 -9.53255 -9.35164 -9.15374 -8.64206 -8.40545 -7.21823 -6.64719 -6.02950 -4.22947 2.91944 3.14350 3.20342 3.32205 3.42166 4.03534 4.04742 4.39477 4.56143 4.77396 4.82099 4.87312 5.16357 5.36135 5.41684 5.60506 5.67909 5.71402 5.86378 5.90417 6.06021 6.11347 6.31888 6.36497 6.68704 6.87389 6.97841 7.20964 7.23046 7.35579 7.47576 7.54762 7.92114 8.06129 8.20772 8.26720 8.58613 8.84189 8.94128 9.10173 9.22165 10.33704 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.005230 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.877299 B = 5352.235746 C = 6219.335551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.259 4.259 11 C -0.067 4.067 12 C -0.300 4.300 13 C 0.219 3.781 14 N -0.753 5.753 15 C 0.154 3.846 16 C 0.065 3.935 17 H 0.053 0.947 18 C -0.122 4.122 19 C -0.143 4.143 20 C 0.048 3.952 21 N -0.675 5.675 22 C -0.233 4.233 23 H 0.276 0.724 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.387 0.613 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.341 0.659 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 -5.381 -8.379 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.135 3.865 10 C -0.279 4.279 11 C -0.086 4.086 12 C -0.322 4.322 13 C 0.120 3.880 14 N -0.386 5.386 15 C 0.028 3.972 16 C -0.044 4.044 17 H 0.071 0.929 18 C -0.160 4.160 19 C -0.181 4.181 20 C -0.082 4.082 21 N -0.305 5.305 22 C -0.257 4.257 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.220 0.780 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.157 0.843 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.619 -5.766 -7.747 13.630 hybrid contribution 0.052 1.448 -0.948 1.731 sum -9.567 -4.318 -8.695 13.630 Atomic orbital electron populations 1.69894 1.07456 1.28538 1.35897 1.25864 0.94644 1.00998 0.92412 0.86370 0.81118 0.81454 0.78355 1.18495 1.19921 1.20162 1.19573 0.98067 0.91350 1.40613 0.90638 1.17319 0.90111 0.91803 0.87221 1.20848 1.04888 0.92952 1.09231 1.20276 0.95203 0.96204 0.96870 1.19875 1.04504 0.94419 1.13450 1.17652 0.86183 0.94255 0.89927 1.44234 1.31461 1.06314 1.56591 1.21013 0.91017 0.88276 0.96891 1.22643 0.93306 0.93256 0.95245 0.92901 1.22701 0.94412 0.96867 1.02033 1.22807 0.97855 0.98035 0.99419 1.22585 0.91081 0.96439 0.98049 1.61676 1.01579 1.06752 1.60494 1.20708 1.02698 0.95024 1.07253 0.91338 0.89490 0.89740 0.89747 0.78026 0.93460 0.92882 0.90741 0.90279 0.90832 0.91684 0.90878 0.93331 0.84319 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.17 10.96 55.55 0.61 -20.56 16 2 C 0.08 2.03 5.14 -17.34 -0.09 1.94 16 3 Si 0.90 19.25 29.60 -169.99 -5.03 14.22 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.47 -12.90 9.05 -37.74 -0.34 -13.25 16 8 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16 9 C 0.14 3.88 5.57 -106.85 -0.60 3.28 16 10 C -0.26 -6.75 9.79 -38.83 -0.38 -7.13 16 11 C -0.07 -1.60 10.02 -39.69 -0.40 -2.00 16 12 C -0.30 -7.09 9.32 -39.08 -0.36 -7.46 16 13 C 0.22 5.30 6.64 -83.86 -0.56 4.74 16 14 N -0.75 -14.88 5.60 -58.69 -0.33 -15.21 16 15 C 0.15 2.50 4.65 -4.04 -0.02 2.48 16 16 C 0.07 0.83 3.39 -66.19 -0.22 0.61 16 17 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 18 C -0.12 -1.26 6.51 -24.53 -0.16 -1.42 16 19 C -0.14 -1.29 6.94 -24.85 -0.17 -1.47 16 20 C 0.05 0.50 7.59 -2.84 -0.02 0.48 16 21 N -0.67 -8.80 6.71 -103.85 -0.70 -9.50 16 22 C -0.23 -6.27 8.53 -38.68 -0.33 -6.60 16 23 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 24 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 25 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 26 H 0.08 1.81 6.70 -52.49 -0.35 1.46 16 27 H 0.39 7.30 8.12 -40.82 -0.33 6.97 16 28 H 0.05 0.76 7.94 -51.93 -0.41 0.34 16 29 H 0.05 0.93 7.89 -51.93 -0.41 0.52 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.08 0.86 8.02 -51.93 -0.42 0.44 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.34 4.26 8.73 -39.29 -0.34 3.91 16 37 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 LS Contribution 302.05 15.07 4.55 4.55 Total: -1.00 -29.35 302.05 -10.07 -39.42 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -5.52 Total: 12.86 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -3.65 Total: -25.79 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.42 Total: -45.27 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.35 -10.07 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.216 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds