Wall clock time and date at job start Mon Mar 30 2020 03:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48494 * 109.47550 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46992 * 300.00143 * 3 2 1 6 6 H 1.48498 * 109.47155 * 59.99625 * 3 2 1 7 7 C 1.39928 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00034 * 197.88647 * 7 2 1 9 9 C 1.41405 * 120.00207 * 17.88664 * 7 2 1 10 10 C 1.40792 * 120.20743 * 204.41529 * 9 7 2 11 11 C 1.37650 * 119.89233 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32544 * 359.97438 * 11 10 9 13 13 C 1.39290 * 120.42395 * 0.02562 * 12 11 10 14 14 N 1.39685 * 119.95289 * 180.02562 * 13 12 11 15 15 C 1.46502 * 119.99801 * 359.97438 * 14 13 12 16 16 C 1.52994 * 109.47322 * 180.02562 * 15 14 13 17 17 H 1.08999 * 110.33481 * 64.29617 * 16 15 14 18 18 C 1.54904 * 110.37682 * 186.55376 * 16 15 14 19 19 C 1.55254 * 101.60001 * 155.81730 * 18 16 15 20 20 C 1.54319 * 103.08786 * 324.48583 * 19 18 16 21 21 N 1.47443 * 107.22810 * 22.20655 * 20 19 18 22 22 C 1.38319 * 120.09761 * 359.97438 * 13 12 11 23 23 H 0.97003 * 119.99743 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.05295 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.83186 * 180.27406 * 11 10 9 26 26 H 1.07996 * 119.78751 * 180.02562 * 12 11 10 27 27 H 0.96995 * 120.00092 * 179.97438 * 14 13 12 28 28 H 1.09006 * 109.46785 * 300.00253 * 15 14 13 29 29 H 1.08999 * 109.47284 * 60.00157 * 15 14 13 30 30 H 1.09009 * 110.98799 * 273.99129 * 18 16 15 31 31 H 1.08997 * 110.98889 * 37.80221 * 18 16 15 32 32 H 1.09005 * 110.74129 * 206.05132 * 19 18 16 33 33 H 1.09001 * 110.76071 * 82.93255 * 19 18 16 34 34 H 1.09000 * 109.89267 * 262.80542 * 20 19 18 35 35 H 1.08995 * 110.02895 * 141.68624 * 20 19 18 36 36 H 1.00906 * 110.99892 * 123.25678 * 21 20 19 37 37 H 1.07999 * 120.16456 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8836 2.3964 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3521 -2.4067 -0.3772 10 6 1.8261 -3.6501 0.0826 11 6 1.1831 -4.8092 -0.2885 12 6 0.0706 -4.7589 -1.1123 13 6 -0.4098 -3.5360 -1.5750 14 7 -1.5327 -3.4967 -2.4049 15 6 -2.2039 -4.7411 -2.7885 16 6 -3.3946 -4.4201 -3.6941 17 1 -3.0512 -3.9742 -4.6275 18 6 -4.2165 -5.7019 -3.9789 19 6 -5.6116 -5.1097 -4.3156 20 6 -5.7111 -3.8919 -3.3730 21 7 -4.3351 -3.5111 -3.0049 22 6 0.2229 -2.3605 -1.2130 23 1 -0.4850 0.8401 0.0004 24 1 2.6928 -3.6944 0.7254 25 1 1.5448 -5.7622 0.0684 26 1 -0.4275 -5.6737 -1.3978 27 1 -1.8680 -2.6455 -2.7272 28 1 -1.5031 -5.3818 -3.3238 29 1 -2.5555 -5.2550 -1.8939 30 1 -3.8066 -6.2477 -4.8289 31 1 -4.2661 -6.3383 -3.0954 32 1 -6.3997 -5.8307 -4.0982 33 1 -5.6563 -4.7948 -5.3582 34 1 -6.2734 -4.1602 -2.4786 35 1 -6.2010 -3.0632 -3.8841 36 1 -4.1496 -2.5488 -3.2454 37 1 -0.1484 -1.4118 -1.5714 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313413668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:31 Heat of formation + Delta-G solvation = -2.847776 kcal Electronic energy + Delta-G solvation = -17257.502093 eV Core-core repulsion = 14611.698735 eV Total energy + Delta-G solvation = -2645.803357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00538 -39.16917 -36.34187 -35.01972 -31.64675 -31.33273 -31.10879 -28.78896 -27.11411 -25.44815 -22.93070 -22.13605 -21.54949 -21.03284 -19.02763 -17.95636 -17.62415 -16.70846 -16.47332 -15.95418 -15.79056 -15.25456 -14.58140 -14.47209 -14.17137 -14.02950 -13.74001 -13.26892 -13.13871 -12.83124 -12.70328 -12.68860 -12.41359 -12.15352 -12.06660 -11.98352 -11.61387 -11.45688 -11.27559 -11.05376 -10.44857 -9.37092 -9.23131 -8.59755 -7.84863 -6.30216 1.09774 1.36086 1.39282 1.54307 1.59187 2.24579 2.78424 2.86315 3.25531 3.72026 3.81810 3.89369 4.10446 4.22627 4.31701 4.52255 4.61462 4.71064 4.78669 4.80823 4.87553 4.96499 5.01377 5.05936 5.13237 5.22157 5.33088 5.33878 5.47603 5.63090 5.94692 6.00526 6.13725 6.24005 6.29580 6.39944 6.60825 6.97249 7.08148 7.11248 7.29297 8.40735 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.005230 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.877299 B = 5352.235746 C = 6219.335551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.108 3.892 10 C -0.287 4.287 11 C -0.063 4.063 12 C -0.305 4.305 13 C 0.221 3.779 14 N -0.746 5.746 15 C 0.152 3.848 16 C 0.070 3.930 17 H 0.060 0.940 18 C -0.119 4.119 19 C -0.134 4.134 20 C 0.045 3.955 21 N -0.698 5.698 22 C -0.261 4.261 23 H 0.285 0.715 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.390 0.610 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.340 0.660 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.328 -5.867 -9.502 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.535 4.535 8 H 0.089 0.911 9 C 0.105 3.895 10 C -0.307 4.307 11 C -0.081 4.081 12 C -0.328 4.328 13 C 0.119 3.881 14 N -0.377 5.377 15 C 0.027 3.973 16 C -0.040 4.040 17 H 0.078 0.922 18 C -0.157 4.157 19 C -0.173 4.173 20 C -0.084 4.084 21 N -0.328 5.328 22 C -0.286 4.286 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.223 0.777 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.605 -6.279 -8.889 15.196 hybrid contribution 0.259 1.499 -0.602 1.636 sum -10.346 -4.780 -9.491 14.831 Atomic orbital electron populations 1.69949 1.08945 1.30018 1.35959 1.26724 0.95458 1.04307 0.91264 0.85203 0.79430 0.76383 0.78891 1.18311 1.18856 1.19068 1.19830 0.98233 0.92759 1.42677 0.91060 1.17722 0.90977 0.92854 0.87910 1.21019 1.05876 0.93366 1.10486 1.20646 0.94654 0.96924 0.95896 1.20212 1.04451 0.95116 1.12989 1.17802 0.86865 0.93736 0.89693 1.44351 1.30154 1.07999 1.55194 1.21207 0.92288 0.86631 0.97134 1.22573 0.92340 0.94733 0.94359 0.92189 1.22715 0.94816 0.95649 1.02533 1.22788 0.97363 0.97437 0.99677 1.22645 0.89621 0.97732 0.98411 1.61622 1.03001 1.06903 1.61290 1.20644 1.03727 0.95396 1.08801 0.90493 0.89203 0.86387 0.87162 0.77709 0.92718 0.94113 0.88949 0.90889 0.89338 0.90413 0.91523 0.91992 0.84370 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.01 10.96 21.82 0.24 -44.77 16 2 C 0.04 1.96 5.14 85.25 0.44 2.40 16 3 Si 0.98 39.91 29.60 68.60 2.03 41.94 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.51 -28.99 9.05 23.46 0.21 -28.77 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.11 6.28 5.57 -21.31 -0.12 6.16 16 10 C -0.29 -15.27 9.79 22.76 0.22 -15.04 16 11 C -0.06 -2.95 10.02 22.20 0.22 -2.73 16 12 C -0.30 -14.13 9.32 22.59 0.21 -13.92 16 13 C 0.22 10.74 6.64 38.16 0.25 10.99 16 14 N -0.75 -29.22 5.60 -339.58 -1.90 -31.13 16 15 C 0.15 4.73 4.65 86.38 0.40 5.13 16 16 C 0.07 1.65 3.39 45.38 0.15 1.81 16 17 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 18 C -0.12 -2.14 6.51 32.02 0.21 -1.93 16 19 C -0.13 -2.03 6.94 31.82 0.22 -1.81 16 20 C 0.04 0.85 7.59 86.65 0.66 1.51 16 21 N -0.70 -17.34 6.71 -482.48 -3.24 -20.58 16 22 C -0.26 -14.53 8.53 22.86 0.20 -14.33 16 23 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 24 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 25 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 26 H 0.11 4.48 6.70 -2.91 -0.02 4.46 16 27 H 0.39 14.77 8.12 -92.71 -0.75 14.01 16 28 H 0.05 1.63 7.94 -2.38 -0.02 1.62 16 29 H 0.04 1.38 7.89 -2.39 -0.02 1.36 16 30 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.07 1.42 8.02 -2.39 -0.02 1.40 16 32 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.34 8.25 8.73 -89.69 -0.78 7.47 16 37 H 0.10 5.72 6.16 -2.91 -0.02 5.70 16 Total: -1.00 -64.40 302.05 -0.06 -64.46 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: -0.47 Total: 40.62 kcal Atomic # 6 Polarization: -53.83 SS G_CDS: 3.28 Total: -50.55 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -4.90 Total: -96.47 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -64.40 -0.06 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.610 kcal (2) G-P(sol) polarization free energy of solvation -64.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds