Wall clock time and date at job start Mon Mar 30 2020 03:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86799 * 120.00303 * 2 1 4 4 H 1.48499 * 109.46942 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47011 * 300.00185 * 3 2 1 6 6 H 1.48500 * 109.47216 * 59.99969 * 3 2 1 7 7 C 1.39932 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99827 * 197.76443 * 7 2 1 9 9 C 1.41407 * 119.99672 * 17.76051 * 7 2 1 10 10 C 1.40786 * 120.21161 * 24.58555 * 9 7 2 11 11 C 1.37646 * 119.89103 * 180.26848 * 10 9 7 12 12 C 1.38519 * 120.32879 * 359.50010 * 11 10 9 13 13 C 1.39290 * 120.42096 * 0.25651 * 12 11 10 14 14 N 1.39687 * 119.94861 * 179.97438 * 13 12 11 15 15 C 1.46497 * 120.00282 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.47419 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.87247 * 295.70027 * 16 15 14 18 18 C 1.54321 * 109.88822 * 174.67281 * 16 15 14 19 19 C 1.55400 * 102.89483 * 218.40413 * 18 16 15 20 20 C 1.54912 * 101.74150 * 35.48305 * 19 18 16 21 21 N 1.47436 * 109.88793 * 56.72863 * 16 15 14 22 22 C 1.38312 * 120.10186 * 359.97438 * 13 12 11 23 23 H 0.96998 * 119.99204 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.05387 * 0.02562 * 10 9 7 25 25 H 1.07998 * 119.83173 * 179.77059 * 11 10 9 26 26 H 1.07997 * 119.78819 * 180.22950 * 12 11 10 27 27 H 0.97000 * 119.99821 * 179.97438 * 14 13 12 28 28 H 1.08999 * 109.47069 * 300.00509 * 15 14 13 29 29 H 1.08999 * 109.47344 * 60.00039 * 15 14 13 30 30 H 1.09004 * 110.70322 * 336.68488 * 18 16 15 31 31 H 1.08989 * 110.70710 * 99.92401 * 18 16 15 32 32 H 1.08998 * 110.87273 * 277.38790 * 19 18 16 33 33 H 1.09001 * 111.02345 * 153.63109 * 19 18 16 34 34 H 1.09010 * 110.36755 * 204.18928 * 20 19 18 35 35 H 1.08990 * 110.37543 * 81.84816 * 20 19 18 36 36 H 1.00897 * 111.00261 * 240.68375 * 21 16 15 37 37 H 1.07996 * 120.16623 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0494 -1.2343 0.2848 9 6 1.3514 -2.4071 -0.3746 10 6 0.2209 -2.3619 -1.2126 11 6 -0.4164 -3.5290 -1.5681 12 6 0.0549 -4.7498 -1.1139 13 6 1.1753 -4.8104 -0.2885 14 7 1.6418 -6.0467 0.1643 15 6 0.9526 -7.2783 -0.2286 16 6 1.6605 -8.4812 0.3983 17 1 2.6705 -8.5669 -0.0023 18 6 0.8666 -9.7708 0.1015 19 6 0.9992 -10.5723 1.4263 20 6 0.9689 -9.4406 2.4837 21 7 1.7137 -8.3242 1.8634 22 6 1.8265 -3.6482 0.0836 23 1 -0.4849 0.8401 0.0004 24 1 -0.1479 -1.4129 -1.5726 25 1 -1.2858 -3.4929 -2.2079 26 1 -0.4497 -5.6603 -1.4013 27 1 2.4222 -6.0898 0.7388 28 1 -0.0800 -7.2433 0.1185 29 1 0.9679 -7.3727 -1.3144 30 1 -0.1784 -9.5408 -0.1063 31 1 1.3147 -10.3167 -0.7286 32 1 1.9449 -11.1131 1.4600 33 1 0.1574 -11.2522 1.5579 34 1 1.4634 -9.7641 3.3998 35 1 -0.0587 -9.1425 2.6911 36 1 2.6680 -8.3005 2.1901 37 1 2.6954 -3.6940 0.7232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313413670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:33 Heat of formation + Delta-G solvation = 16.097049 kcal Electronic energy + Delta-G solvation = -17101.304791 eV Core-core repulsion = 14456.322943 eV Total energy + Delta-G solvation = -2644.981848 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.94939 -37.48570 -34.74010 -32.97322 -30.24935 -30.13570 -29.60976 -27.14604 -25.12212 -24.21559 -21.38654 -20.90988 -20.15240 -19.59698 -17.21120 -17.08150 -15.70839 -15.31177 -14.81792 -14.53293 -14.12193 -13.82688 -13.61023 -12.87164 -12.79513 -12.44191 -12.18029 -12.00982 -11.64636 -11.41624 -11.29056 -11.23426 -11.03925 -10.87319 -10.81243 -10.45449 -10.30818 -9.65173 -9.21735 -9.09829 -8.59321 -8.51864 -7.27557 -6.62243 -6.03418 -4.21442 2.92121 3.15282 3.21191 3.32246 3.48711 3.97795 4.04542 4.39006 4.49196 4.75488 4.81648 4.87019 5.13856 5.32333 5.35550 5.55951 5.63219 5.70128 5.79213 5.91584 6.01341 6.09095 6.28079 6.43529 6.66640 6.79432 7.14996 7.20531 7.21410 7.30908 7.45748 7.54531 7.92614 8.03716 8.25252 8.36810 8.63773 8.83215 8.91042 9.10362 9.24258 10.34004 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.046731 B = 0.004211 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.036098 B = 6646.967270 C = 6969.768941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.142 3.858 10 C -0.201 4.201 11 C -0.075 4.075 12 C -0.303 4.303 13 C 0.228 3.772 14 N -0.752 5.752 15 C 0.154 3.846 16 C 0.066 3.934 17 H 0.063 0.937 18 C -0.133 4.133 19 C -0.154 4.154 20 C 0.049 3.951 21 N -0.675 5.675 22 C -0.291 4.291 23 H 0.277 0.723 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.388 0.612 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.338 0.662 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -15.166 1.579 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.139 3.861 10 C -0.222 4.222 11 C -0.094 4.094 12 C -0.326 4.326 13 C 0.129 3.871 14 N -0.384 5.384 15 C 0.028 3.972 16 C -0.044 4.044 17 H 0.081 0.919 18 C -0.172 4.172 19 C -0.193 4.193 20 C -0.080 4.080 21 N -0.304 5.304 22 C -0.315 4.315 23 H 0.088 0.912 24 H 0.131 0.869 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.221 0.779 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.154 0.846 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.250 -14.636 1.551 14.771 hybrid contribution 1.136 -0.028 0.152 1.146 sum 2.386 -14.664 1.703 14.954 Atomic orbital electron populations 1.69886 1.07523 1.28711 1.35764 1.25884 0.94654 1.01093 0.92340 0.86337 0.81039 0.81324 0.78398 1.18508 1.19828 1.20148 1.19570 0.97997 0.91304 1.40671 0.90696 1.17338 0.90316 0.91296 0.87188 1.21145 1.00656 0.96576 1.03814 1.20424 0.97597 0.92965 0.98446 1.19843 1.03171 0.96383 1.13253 1.17487 0.92781 0.84217 0.92605 1.44215 1.34142 1.02479 1.57583 1.21044 0.95911 0.83523 0.96707 1.22432 0.98943 0.94601 0.88418 0.91869 1.22819 1.01499 0.95282 0.97619 1.23196 1.01980 0.98406 0.95751 1.22870 1.00114 0.88749 0.96267 1.61495 1.18722 1.45272 1.04864 1.20384 1.06643 0.91570 1.12881 0.91211 0.86886 0.89817 0.89874 0.77909 0.93275 0.93539 0.90479 0.90911 0.91653 0.90774 0.91661 0.90497 0.84646 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.46 10.96 55.55 0.61 -20.85 16 2 C 0.08 2.03 5.14 -17.34 -0.09 1.95 16 3 Si 0.90 19.37 29.59 -169.99 -5.03 14.34 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.47 -12.97 9.05 -37.74 -0.34 -13.31 16 8 H 0.07 2.01 7.91 -52.49 -0.41 1.60 16 9 C 0.14 3.99 5.57 -106.85 -0.60 3.40 16 10 C -0.20 -5.56 8.69 -38.84 -0.34 -5.90 16 11 C -0.08 -1.89 10.01 -39.69 -0.40 -2.29 16 12 C -0.30 -7.27 9.32 -39.09 -0.36 -7.64 16 13 C 0.23 5.42 6.64 -83.86 -0.56 4.87 16 14 N -0.75 -14.31 5.58 -58.69 -0.33 -14.64 16 15 C 0.15 2.43 4.50 -4.04 -0.02 2.41 16 16 C 0.07 0.79 3.48 -66.73 -0.23 0.55 16 17 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.13 -1.29 6.49 -24.77 -0.16 -1.45 16 19 C -0.15 -1.29 7.08 -24.45 -0.17 -1.47 16 20 C 0.05 0.48 7.58 -2.29 -0.02 0.46 16 21 N -0.68 -7.96 6.57 -103.81 -0.68 -8.64 16 22 C -0.29 -7.58 9.63 -38.67 -0.37 -7.95 16 23 H 0.28 6.78 8.30 -40.82 -0.34 6.45 16 24 H 0.11 3.21 6.16 -52.49 -0.32 2.88 16 25 H 0.08 1.89 8.06 -52.49 -0.42 1.46 16 26 H 0.08 1.81 6.70 -52.49 -0.35 1.46 16 27 H 0.39 6.89 8.22 -40.82 -0.34 6.55 16 28 H 0.05 0.84 7.87 -51.93 -0.41 0.44 16 29 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 30 H 0.08 0.78 7.80 -51.93 -0.40 0.38 16 31 H 0.07 0.62 8.14 -51.94 -0.42 0.20 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.34 3.47 8.91 -39.29 -0.35 3.12 16 37 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -29.78 301.99 -10.06 -39.84 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.52 Total: 11.77 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -3.66 Total: -26.38 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.40 Total: -44.12 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.78 -10.06 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.935 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds