Wall clock time and date at job start Mon Mar 30 2020 03:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86799 * 120.00303 * 2 1 4 4 H 1.48499 * 109.46942 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47011 * 300.00185 * 3 2 1 6 6 H 1.48500 * 109.47216 * 59.99969 * 3 2 1 7 7 C 1.39932 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99827 * 197.76443 * 7 2 1 9 9 C 1.41407 * 119.99672 * 17.76051 * 7 2 1 10 10 C 1.40786 * 120.21161 * 24.58555 * 9 7 2 11 11 C 1.37646 * 119.89103 * 180.26848 * 10 9 7 12 12 C 1.38519 * 120.32879 * 359.50010 * 11 10 9 13 13 C 1.39290 * 120.42096 * 0.25651 * 12 11 10 14 14 N 1.39687 * 119.94861 * 179.97438 * 13 12 11 15 15 C 1.46497 * 120.00282 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.47419 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.87247 * 295.70027 * 16 15 14 18 18 C 1.54321 * 109.88822 * 174.67281 * 16 15 14 19 19 C 1.55400 * 102.89483 * 218.40413 * 18 16 15 20 20 C 1.54912 * 101.74150 * 35.48305 * 19 18 16 21 21 N 1.47436 * 109.88793 * 56.72863 * 16 15 14 22 22 C 1.38312 * 120.10186 * 359.97438 * 13 12 11 23 23 H 0.96998 * 119.99204 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.05387 * 0.02562 * 10 9 7 25 25 H 1.07998 * 119.83173 * 179.77059 * 11 10 9 26 26 H 1.07997 * 119.78819 * 180.22950 * 12 11 10 27 27 H 0.97000 * 119.99821 * 179.97438 * 14 13 12 28 28 H 1.08999 * 109.47069 * 300.00509 * 15 14 13 29 29 H 1.08999 * 109.47344 * 60.00039 * 15 14 13 30 30 H 1.09004 * 110.70322 * 336.68488 * 18 16 15 31 31 H 1.08989 * 110.70710 * 99.92401 * 18 16 15 32 32 H 1.08998 * 110.87273 * 277.38790 * 19 18 16 33 33 H 1.09001 * 111.02345 * 153.63109 * 19 18 16 34 34 H 1.09010 * 110.36755 * 204.18928 * 20 19 18 35 35 H 1.08990 * 110.37543 * 81.84816 * 20 19 18 36 36 H 1.00897 * 111.00261 * 240.68375 * 21 16 15 37 37 H 1.07996 * 120.16623 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0494 -1.2343 0.2848 9 6 1.3514 -2.4071 -0.3746 10 6 0.2209 -2.3619 -1.2126 11 6 -0.4164 -3.5290 -1.5681 12 6 0.0549 -4.7498 -1.1139 13 6 1.1753 -4.8104 -0.2885 14 7 1.6418 -6.0467 0.1643 15 6 0.9526 -7.2783 -0.2286 16 6 1.6605 -8.4812 0.3983 17 1 2.6705 -8.5669 -0.0023 18 6 0.8666 -9.7708 0.1015 19 6 0.9992 -10.5723 1.4263 20 6 0.9689 -9.4406 2.4837 21 7 1.7137 -8.3242 1.8634 22 6 1.8265 -3.6482 0.0836 23 1 -0.4849 0.8401 0.0004 24 1 -0.1479 -1.4129 -1.5726 25 1 -1.2858 -3.4929 -2.2079 26 1 -0.4497 -5.6603 -1.4013 27 1 2.4222 -6.0898 0.7388 28 1 -0.0800 -7.2433 0.1185 29 1 0.9679 -7.3727 -1.3144 30 1 -0.1784 -9.5408 -0.1063 31 1 1.3147 -10.3167 -0.7286 32 1 1.9449 -11.1131 1.4600 33 1 0.1574 -11.2522 1.5579 34 1 1.4634 -9.7641 3.3998 35 1 -0.0587 -9.1425 2.6911 36 1 2.6680 -8.3005 2.1901 37 1 2.6954 -3.6940 0.7232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313413670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:32 Heat of formation + Delta-G solvation = -2.971655 kcal Electronic energy + Delta-G solvation = -17102.131672 eV Core-core repulsion = 14456.322943 eV Total energy + Delta-G solvation = -2645.808729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03773 -39.19219 -36.45615 -34.80341 -31.71634 -31.41633 -30.99361 -28.69187 -27.11758 -25.53492 -22.70949 -22.35187 -21.71228 -20.88877 -19.09787 -17.98559 -17.31902 -17.00809 -16.31746 -15.92527 -15.90334 -15.00317 -14.70728 -14.50490 -14.31788 -13.94998 -13.67315 -13.40995 -13.21821 -12.78749 -12.75871 -12.55187 -12.31928 -12.09885 -12.06808 -11.94264 -11.63635 -11.55740 -11.18146 -11.03337 -10.40475 -9.41650 -9.31686 -8.59072 -7.85900 -6.30766 1.06196 1.37091 1.40327 1.55368 1.61038 2.24451 2.82174 2.82707 3.30057 3.71483 3.82506 3.89258 4.12351 4.28855 4.38628 4.50473 4.60225 4.70896 4.74514 4.83007 4.87020 4.96911 5.07193 5.08969 5.15512 5.18655 5.27407 5.36333 5.45020 5.63469 5.91414 6.01333 6.06194 6.22812 6.34036 6.50670 6.66506 6.93560 7.04751 7.12400 7.32050 8.39736 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.046731 B = 0.004211 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.036098 B = 6646.967270 C = 6969.768941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.113 3.887 10 C -0.234 4.234 11 C -0.075 4.075 12 C -0.308 4.308 13 C 0.235 3.765 14 N -0.741 5.741 15 C 0.151 3.849 16 C 0.072 3.928 17 H 0.073 0.927 18 C -0.131 4.131 19 C -0.144 4.144 20 C 0.047 3.953 21 N -0.697 5.697 22 C -0.315 4.315 23 H 0.286 0.714 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.395 0.605 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.346 0.654 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 -16.563 1.681 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.111 3.889 10 C -0.255 4.255 11 C -0.094 4.094 12 C -0.331 4.331 13 C 0.133 3.867 14 N -0.372 5.372 15 C 0.026 3.974 16 C -0.038 4.038 17 H 0.091 0.909 18 C -0.170 4.170 19 C -0.183 4.183 20 C -0.082 4.082 21 N -0.326 5.326 22 C -0.339 4.339 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.229 0.771 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.163 0.837 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.752 -16.092 1.668 16.273 hybrid contribution 0.931 0.270 0.148 0.981 sum 2.684 -15.822 1.816 16.151 Atomic orbital electron populations 1.69940 1.09085 1.30276 1.35786 1.26789 0.95480 1.04527 0.91139 0.85152 0.79360 0.76112 0.78962 1.18225 1.18784 1.18963 1.19832 0.98187 0.92665 1.42658 0.91013 1.17711 0.91022 0.92429 0.87782 1.21085 1.01901 0.96827 1.05661 1.20718 0.97880 0.92677 0.98110 1.20133 1.03214 0.96903 1.12852 1.17592 0.92149 0.85386 0.91607 1.44309 1.34125 1.02087 1.56664 1.21259 0.95407 0.83485 0.97295 1.22328 0.99287 0.93673 0.88494 0.90864 1.22823 1.00823 0.94381 0.99004 1.23150 1.03208 0.97885 0.94038 1.22894 0.99208 0.88739 0.97380 1.61387 1.19594 1.46736 1.04924 1.20503 1.07417 0.92088 1.13917 0.90301 0.88568 0.87463 0.87363 0.77136 0.94635 0.93131 0.91156 0.89274 0.90367 0.89555 0.90070 0.91984 0.83707 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.64 10.96 21.82 0.24 -45.40 16 2 C 0.04 1.88 5.14 85.25 0.44 2.32 16 3 Si 0.98 40.07 29.59 68.60 2.03 42.10 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.50 -29.05 9.05 23.46 0.21 -28.84 16 8 H 0.07 4.01 7.91 -2.91 -0.02 3.98 16 9 C 0.11 6.63 5.57 -21.31 -0.12 6.51 16 10 C -0.23 -13.34 8.69 22.75 0.20 -13.14 16 11 C -0.07 -3.79 10.01 22.20 0.22 -3.56 16 12 C -0.31 -14.56 9.32 22.59 0.21 -14.35 16 13 C 0.23 11.12 6.64 38.16 0.25 11.38 16 14 N -0.74 -27.47 5.58 -339.59 -1.90 -29.37 16 15 C 0.15 4.50 4.50 86.38 0.39 4.88 16 16 C 0.07 1.56 3.48 45.26 0.16 1.72 16 17 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 18 C -0.13 -2.19 6.49 31.87 0.21 -1.98 16 19 C -0.14 -1.97 7.08 32.07 0.23 -1.74 16 20 C 0.05 0.81 7.58 86.77 0.66 1.47 16 21 N -0.70 -15.13 6.57 -482.34 -3.17 -18.30 16 22 C -0.31 -16.82 9.63 22.86 0.22 -16.60 16 23 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 24 H 0.10 5.69 6.16 -2.91 -0.02 5.68 16 25 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.11 4.51 6.70 -2.91 -0.02 4.49 16 27 H 0.39 13.63 8.22 -92.71 -0.76 12.87 16 28 H 0.04 1.17 7.87 -2.39 -0.02 1.15 16 29 H 0.05 1.49 7.94 -2.39 -0.02 1.47 16 30 H 0.07 1.27 7.80 -2.39 -0.02 1.26 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.35 6.44 8.91 -89.70 -0.80 5.64 16 37 H 0.09 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -65.45 301.99 -0.01 -65.47 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: -0.49 Total: 37.43 kcal Atomic # 6 Polarization: -55.21 SS G_CDS: 3.27 Total: -51.93 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -4.83 Total: -93.07 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -65.45 -0.01 -65.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.495 kcal (2) G-P(sol) polarization free energy of solvation -65.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds