Wall clock time and date at job start Mon Mar 30 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46973 * 299.99651 * 3 2 1 6 6 H 1.48498 * 109.46849 * 59.99650 * 3 2 1 7 7 C 1.37877 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99471 * 0.02562 * 7 2 1 10 10 N 1.46909 * 109.46738 * 174.60832 * 9 7 2 11 11 C 1.46423 * 111.00234 * 310.15595 * 10 9 7 12 12 C 1.53286 * 108.64793 * 287.84227 * 11 10 9 13 13 H 1.09004 * 109.76843 * 51.41472 * 12 11 10 14 14 C 1.53006 * 109.72162 * 172.16771 * 12 11 10 15 15 N 1.46897 * 109.46867 * 183.51214 * 14 12 11 16 16 C 1.53043 * 107.98510 * 291.77528 * 12 11 10 17 17 C 1.50805 * 109.62757 * 47.31991 * 16 12 11 18 18 C 1.38615 * 118.13083 * 164.32130 * 17 16 12 19 19 C 1.38059 * 120.48529 * 179.73582 * 18 17 16 20 20 C 1.38313 * 119.89284 * 359.95636 * 19 18 17 21 21 C 1.37806 * 119.94752 * 0.14775 * 20 19 18 22 22 C 1.38369 * 122.01036 * 344.27737 * 17 16 12 23 23 H 0.97002 * 119.99701 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47222 * 54.61597 * 9 7 2 25 25 H 1.09001 * 109.47559 * 294.61073 * 9 7 2 26 26 H 1.08998 * 109.60565 * 47.60233 * 11 10 9 27 27 H 1.08998 * 109.60199 * 167.93492 * 11 10 9 28 28 H 1.08995 * 109.46686 * 303.51617 * 14 12 11 29 29 H 1.08997 * 109.46784 * 63.51003 * 14 12 11 30 30 H 1.00895 * 111.00245 * 56.04894 * 15 14 12 31 31 H 1.00901 * 110.99650 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.44042 * 287.28237 * 16 12 11 33 33 H 1.09001 * 109.44123 * 167.35897 * 16 12 11 34 34 H 1.08001 * 119.76050 * 359.71483 * 18 17 16 35 35 H 1.07995 * 120.05386 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.02359 * 180.11533 * 20 19 18 37 37 H 1.08004 * 119.78914 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2005 -3.6126 -0.1290 11 6 3.1239 -3.3881 -1.2429 12 6 2.3587 -3.5711 -2.5584 13 1 1.4528 -2.9651 -2.5454 14 6 3.2450 -3.1536 -3.7337 15 7 2.4790 -3.2512 -4.9834 16 6 1.9898 -5.0507 -2.6886 17 6 1.3980 -5.5413 -1.3912 18 6 0.7036 -6.7409 -1.4018 19 6 0.1466 -7.2381 -0.2406 20 6 0.2814 -6.5368 0.9439 21 6 0.9686 -5.3424 0.9618 22 6 1.5312 -4.8329 -0.2100 23 1 -0.4850 0.8401 -0.0004 24 1 0.5543 -2.5164 -0.8376 25 1 0.6983 -2.5996 0.9346 26 1 3.5222 -2.3749 -1.1892 27 1 3.9422 -4.1062 -1.1900 28 1 3.5774 -2.1255 -3.5906 29 1 4.1121 -3.8118 -3.7866 30 1 1.6356 -2.6996 -4.9346 31 1 3.0428 -2.9800 -5.7751 32 1 2.8844 -5.6286 -2.9206 33 1 1.2606 -5.1738 -3.4894 34 1 0.5972 -7.2906 -2.3254 35 1 -0.3934 -8.1733 -0.2569 36 1 -0.1518 -6.9247 1.8539 37 1 1.0720 -4.7966 1.8880 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328486100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:47 Heat of formation + Delta-G solvation = 22.734319 kcal Electronic energy + Delta-G solvation = -18170.349592 eV Core-core repulsion = 15525.655558 eV Total energy + Delta-G solvation = -2644.694034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99632 -36.80343 -35.01438 -32.81572 -32.12138 -29.78219 -29.26818 -26.93372 -24.85629 -24.19919 -22.27645 -21.12785 -21.02031 -18.77531 -16.68903 -15.93361 -15.61071 -15.32297 -15.13780 -14.48106 -14.18069 -13.90490 -13.53811 -13.18670 -12.86362 -12.54916 -12.50492 -12.08313 -11.83799 -11.55519 -11.16628 -10.99192 -10.76774 -10.73253 -10.63966 -10.27020 -10.02286 -9.94138 -9.27008 -8.66886 -8.49072 -8.40442 -8.15918 -6.98556 -6.14047 -4.16909 1.89722 1.96055 3.22496 3.30931 3.34317 4.24640 4.35274 4.76054 4.84502 5.14429 5.21886 5.29735 5.43027 5.49966 5.52189 5.73044 5.84994 5.94077 6.01369 6.06669 6.13779 6.24848 6.33242 6.48136 6.56225 6.68087 6.85290 6.90242 7.01493 7.07436 7.28748 7.30121 7.31819 7.46352 7.59327 7.73098 8.00970 8.06298 8.55530 8.89682 9.47416 10.96524 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.008504 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.309078 B = 3291.692107 C = 4345.376926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.202 3.798 10 N -0.502 5.502 11 C 0.068 3.932 12 C -0.119 4.119 13 H 0.082 0.918 14 C 0.073 3.927 15 N -0.851 5.851 16 C -0.056 4.056 17 C -0.132 4.132 18 C -0.106 4.106 19 C -0.155 4.155 20 C -0.113 4.113 21 C -0.127 4.127 22 C 0.136 3.864 23 H 0.262 0.738 24 H 0.005 0.995 25 H 0.032 0.968 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.341 0.659 31 H 0.334 0.666 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -9.086 -5.230 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.080 3.920 10 N -0.217 5.217 11 C -0.061 4.061 12 C -0.139 4.139 13 H 0.100 0.900 14 C -0.059 4.059 15 N -0.380 5.380 16 C -0.093 4.093 17 C -0.135 4.135 18 C -0.124 4.124 19 C -0.174 4.174 20 C -0.132 4.132 21 C -0.147 4.147 22 C 0.038 3.962 23 H 0.072 0.928 24 H 0.022 0.978 25 H 0.050 0.950 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.354 -9.665 -4.609 11.221 hybrid contribution 0.033 1.960 -0.662 2.069 sum 3.387 -7.705 -5.270 9.931 Atomic orbital electron populations 1.69975 1.06038 1.26848 1.50176 1.24973 0.94847 0.99275 0.95163 0.86468 0.80067 0.83424 0.77659 1.19605 1.21067 1.20850 1.21225 0.93455 0.89849 1.51149 0.91450 1.19815 0.89640 0.85707 0.96852 1.58826 1.20261 1.01458 1.41117 1.22157 0.94185 1.03117 0.86606 1.21747 1.00398 0.96340 0.95438 0.89959 1.21738 0.95964 0.99052 0.89097 1.58778 1.10280 1.64216 1.04715 1.20377 0.99984 0.95295 0.93636 1.20088 1.01632 0.97120 0.94685 1.20860 0.98258 0.95517 0.97809 1.20841 1.02887 1.00433 0.93221 1.20865 0.99362 0.95253 0.97684 1.21074 0.99877 0.96125 0.97649 1.18837 0.93084 0.92501 0.91798 0.92802 0.97760 0.94999 0.88277 0.92576 0.95065 0.91525 0.84658 0.85425 0.91655 0.90749 0.87004 0.87016 0.86719 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -13.91 8.19 -34.44 -0.28 -14.19 16 8 H 0.07 1.77 6.26 -52.49 -0.33 1.44 16 9 C 0.20 5.18 4.36 -4.97 -0.02 5.16 16 10 N -0.50 -11.06 4.61 -172.70 -0.80 -11.85 16 11 C 0.07 1.32 4.85 -3.94 -0.02 1.30 16 12 C -0.12 -2.10 2.39 -90.45 -0.22 -2.32 16 13 H 0.08 1.73 6.62 -51.93 -0.34 1.39 16 14 C 0.07 1.07 6.18 -3.82 -0.02 1.05 16 15 N -0.85 -11.11 9.34 -10.37 -0.10 -11.21 16 16 C -0.06 -0.93 4.91 -27.81 -0.14 -1.06 16 17 C -0.13 -2.41 5.74 -104.38 -0.60 -3.01 16 18 C -0.11 -1.70 9.63 -39.51 -0.38 -2.08 16 19 C -0.15 -2.36 10.05 -39.62 -0.40 -2.76 16 20 C -0.11 -1.82 10.04 -39.71 -0.40 -2.22 16 21 C -0.13 -2.42 9.40 -39.23 -0.37 -2.78 16 22 C 0.14 2.77 5.11 -83.85 -0.43 2.34 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.00 0.13 6.89 -51.93 -0.36 -0.23 16 25 H 0.03 0.89 7.88 -51.93 -0.41 0.48 16 26 H 0.10 2.06 5.58 -51.93 -0.29 1.77 16 27 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.34 4.54 8.99 -39.29 -0.35 4.19 16 31 H 0.33 3.58 9.08 -39.29 -0.36 3.22 16 32 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.12 2.32 8.06 -52.48 -0.42 1.89 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -28.84 296.76 -9.44 -38.29 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.37 Total: 8.53 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -3.37 Total: -19.07 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.16 Total: -48.09 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.84 -9.44 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328486100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.022 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds