Wall clock time and date at job start Mon Mar 30 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46973 * 299.99651 * 3 2 1 6 6 H 1.48498 * 109.46849 * 59.99650 * 3 2 1 7 7 C 1.37877 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99471 * 0.02562 * 7 2 1 10 10 N 1.46909 * 109.46738 * 174.60832 * 9 7 2 11 11 C 1.46423 * 111.00234 * 310.15595 * 10 9 7 12 12 C 1.53286 * 108.64793 * 287.84227 * 11 10 9 13 13 H 1.09004 * 109.76843 * 51.41472 * 12 11 10 14 14 C 1.53006 * 109.72162 * 172.16771 * 12 11 10 15 15 N 1.46897 * 109.46867 * 183.51214 * 14 12 11 16 16 C 1.53043 * 107.98510 * 291.77528 * 12 11 10 17 17 C 1.50805 * 109.62757 * 47.31991 * 16 12 11 18 18 C 1.38615 * 118.13083 * 164.32130 * 17 16 12 19 19 C 1.38059 * 120.48529 * 179.73582 * 18 17 16 20 20 C 1.38313 * 119.89284 * 359.95636 * 19 18 17 21 21 C 1.37806 * 119.94752 * 0.14775 * 20 19 18 22 22 C 1.38369 * 122.01036 * 344.27737 * 17 16 12 23 23 H 0.97002 * 119.99701 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47222 * 54.61597 * 9 7 2 25 25 H 1.09001 * 109.47559 * 294.61073 * 9 7 2 26 26 H 1.08998 * 109.60565 * 47.60233 * 11 10 9 27 27 H 1.08998 * 109.60199 * 167.93492 * 11 10 9 28 28 H 1.08995 * 109.46686 * 303.51617 * 14 12 11 29 29 H 1.08997 * 109.46784 * 63.51003 * 14 12 11 30 30 H 1.00895 * 111.00245 * 56.04894 * 15 14 12 31 31 H 1.00901 * 110.99650 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.44042 * 287.28237 * 16 12 11 33 33 H 1.09001 * 109.44123 * 167.35897 * 16 12 11 34 34 H 1.08001 * 119.76050 * 359.71483 * 18 17 16 35 35 H 1.07995 * 120.05386 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.02359 * 180.11533 * 20 19 18 37 37 H 1.08004 * 119.78914 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2005 -3.6126 -0.1290 11 6 3.1239 -3.3881 -1.2429 12 6 2.3587 -3.5711 -2.5584 13 1 1.4528 -2.9651 -2.5454 14 6 3.2450 -3.1536 -3.7337 15 7 2.4790 -3.2512 -4.9834 16 6 1.9898 -5.0507 -2.6886 17 6 1.3980 -5.5413 -1.3912 18 6 0.7036 -6.7409 -1.4018 19 6 0.1466 -7.2381 -0.2406 20 6 0.2814 -6.5368 0.9439 21 6 0.9686 -5.3424 0.9618 22 6 1.5312 -4.8329 -0.2100 23 1 -0.4850 0.8401 -0.0004 24 1 0.5543 -2.5164 -0.8376 25 1 0.6983 -2.5996 0.9346 26 1 3.5222 -2.3749 -1.1892 27 1 3.9422 -4.1062 -1.1900 28 1 3.5774 -2.1255 -3.5906 29 1 4.1121 -3.8118 -3.7866 30 1 1.6356 -2.6996 -4.9346 31 1 3.0428 -2.9800 -5.7751 32 1 2.8844 -5.6286 -2.9206 33 1 1.2606 -5.1738 -3.4894 34 1 0.5972 -7.2906 -2.3254 35 1 -0.3934 -8.1733 -0.2569 36 1 -0.1518 -6.9247 1.8539 37 1 1.0720 -4.7966 1.8880 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328486100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:47 Heat of formation + Delta-G solvation = 3.587564 kcal Electronic energy + Delta-G solvation = -18171.179858 eV Core-core repulsion = 15525.655558 eV Total energy + Delta-G solvation = -2645.524300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.46959 -38.19495 -36.48708 -34.72080 -33.53940 -31.18166 -30.74846 -28.80933 -26.31129 -25.74751 -23.95001 -22.61421 -22.38575 -20.24759 -18.59768 -17.51781 -17.01346 -16.80652 -16.60933 -16.10215 -15.43861 -15.35898 -15.06483 -14.76991 -14.38153 -14.04058 -13.94305 -13.85348 -13.18748 -13.02693 -12.88938 -12.61950 -12.53352 -12.30380 -12.05207 -11.98278 -11.69025 -11.50040 -11.11739 -10.70179 -10.01652 -9.59932 -9.51627 -8.59818 -8.25972 -6.36844 0.54587 0.57205 1.37222 1.39065 1.51716 2.35519 2.88790 3.07758 3.27069 3.61886 3.80040 3.93692 4.12826 4.20298 4.27484 4.44175 4.49393 4.59033 4.65336 4.75038 4.79990 4.88339 4.92231 5.05873 5.10956 5.18179 5.22522 5.36175 5.44823 5.53579 5.61774 5.66696 5.70712 5.97276 6.13393 6.17724 6.27666 6.61400 6.77457 6.86373 7.32683 8.85826 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.008504 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.309078 B = 3291.692107 C = 4345.376926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.071 0.929 9 C 0.226 3.774 10 N -0.512 5.512 11 C 0.068 3.932 12 C -0.110 4.110 13 H 0.039 0.961 14 C 0.081 3.919 15 N -0.848 5.848 16 C -0.047 4.047 17 C -0.144 4.144 18 C -0.107 4.107 19 C -0.143 4.143 20 C -0.112 4.112 21 C -0.150 4.150 22 C 0.095 3.905 23 H 0.265 0.735 24 H -0.030 1.030 25 H -0.003 1.003 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.022 0.978 29 H 0.086 0.914 30 H 0.339 0.661 31 H 0.351 0.649 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 -10.632 -6.447 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.566 4.566 8 H 0.089 0.911 9 C 0.103 3.897 10 N -0.227 5.227 11 C -0.060 4.060 12 C -0.131 4.131 13 H 0.058 0.942 14 C -0.050 4.050 15 N -0.378 5.378 16 C -0.084 4.084 17 C -0.147 4.147 18 C -0.126 4.126 19 C -0.161 4.161 20 C -0.130 4.130 21 C -0.170 4.170 22 C -0.002 4.002 23 H 0.074 0.926 24 H -0.013 1.013 25 H 0.015 0.985 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.104 0.896 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.177 -11.243 -5.842 13.340 hybrid contribution -0.288 2.301 -0.267 2.334 sum 3.888 -8.942 -6.109 11.506 Atomic orbital electron populations 1.70112 1.07806 1.27914 1.51186 1.25893 0.95663 1.03103 0.94533 0.85349 0.79104 0.78535 0.77757 1.18421 1.20321 1.20526 1.21499 0.93689 0.90610 1.50807 0.91132 1.19301 0.89540 0.87372 0.93494 1.58711 1.19911 1.01164 1.42945 1.22152 0.94327 1.02454 0.87020 1.21578 0.98806 0.96845 0.95836 0.94241 1.21613 0.95884 0.98900 0.88633 1.58738 1.10280 1.64200 1.04566 1.20347 1.00805 0.94224 0.93037 1.20371 1.01967 0.97885 0.94446 1.21259 0.97079 0.94687 0.99564 1.21336 1.01359 1.01223 0.92175 1.21216 0.98215 0.93982 0.99624 1.21198 1.01267 0.97651 0.96922 1.19051 0.95396 0.92316 0.93419 0.92621 1.01273 0.98499 0.90183 0.90685 0.95967 0.89553 0.84946 0.83581 0.89705 0.90120 0.83896 0.83024 0.83836 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.38 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.53 -29.56 8.19 25.60 0.21 -29.35 16 8 H 0.07 3.83 6.26 -2.91 -0.02 3.81 16 9 C 0.23 12.42 4.36 85.56 0.37 12.79 16 10 N -0.51 -23.65 4.61 -700.31 -3.23 -26.88 16 11 C 0.07 2.73 4.85 86.49 0.42 3.15 16 12 C -0.11 -3.94 2.39 -10.68 -0.03 -3.97 16 13 H 0.04 1.75 6.62 -2.39 -0.02 1.73 16 14 C 0.08 2.30 6.18 86.31 0.53 2.84 16 15 N -0.85 -20.86 9.34 -186.72 -1.74 -22.61 16 16 C -0.05 -1.50 4.91 29.90 0.15 -1.35 16 17 C -0.14 -5.14 5.74 -19.71 -0.11 -5.25 16 18 C -0.11 -3.15 9.63 22.32 0.21 -2.94 16 19 C -0.14 -3.86 10.05 22.24 0.22 -3.64 16 20 C -0.11 -3.43 10.04 22.19 0.22 -3.21 16 21 C -0.15 -5.86 9.40 22.50 0.21 -5.65 16 22 C 0.10 3.98 5.11 38.30 0.20 4.18 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H -0.03 -1.84 6.89 -2.38 -0.02 -1.86 16 25 H 0.00 -0.18 7.88 -2.39 -0.02 -0.20 16 26 H 0.08 3.45 5.58 -2.39 -0.01 3.43 16 27 H 0.07 2.67 8.11 -2.39 -0.02 2.65 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 30 H 0.34 8.83 8.99 -89.70 -0.81 8.02 16 31 H 0.35 6.76 9.08 -89.69 -0.81 5.95 16 32 H 0.08 2.38 8.05 -2.39 -0.02 2.36 16 33 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 34 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -65.24 296.76 -0.13 -65.37 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.54 Total: 25.66 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 3.07 Total: -31.56 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -4.69 Total: -105.02 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.24 -0.13 -65.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328486100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.957 kcal (2) G-P(sol) polarization free energy of solvation -65.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds