Wall clock time and date at job start Mon Mar 30 2020 03:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99824 * 2 1 4 4 H 1.48497 * 109.46985 * 269.99893 * 3 2 1 5 5 H 1.48502 * 109.46818 * 30.00114 * 3 2 1 6 6 H 1.48501 * 109.47030 * 150.00229 * 3 2 1 7 7 C 1.37878 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99684 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47414 * 185.32204 * 9 7 2 11 11 C 1.46431 * 110.99828 * 68.86662 * 10 9 7 12 12 C 1.53381 * 108.66227 * 72.19589 * 11 10 9 13 13 H 1.09004 * 109.76840 * 308.56756 * 12 11 10 14 14 C 1.52996 * 109.76848 * 187.83797 * 12 11 10 15 15 N 1.46900 * 109.47093 * 174.99602 * 14 12 11 16 16 C 1.53047 * 107.93444 * 68.22933 * 12 11 10 17 17 C 1.50802 * 109.65384 * 312.69599 * 16 12 11 18 18 C 1.38618 * 118.11727 * 195.48021 * 17 16 12 19 19 C 1.38064 * 120.48181 * 180.11504 * 18 17 16 20 20 C 1.38315 * 119.88707 * 0.53147 * 19 18 17 21 21 C 1.37809 * 119.95232 * 359.32827 * 20 19 18 22 22 C 1.38376 * 122.01696 * 15.66161 * 17 16 12 23 23 H 0.96997 * 120.00116 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47619 * 65.32223 * 9 7 2 25 25 H 1.09006 * 109.47498 * 305.32457 * 9 7 2 26 26 H 1.09005 * 109.60613 * 191.94512 * 11 10 9 27 27 H 1.08993 * 109.60681 * 312.27649 * 11 10 9 28 28 H 1.08994 * 109.47387 * 295.00374 * 14 12 11 29 29 H 1.09007 * 109.47217 * 55.00325 * 14 12 11 30 30 H 1.00900 * 110.99830 * 56.05001 * 15 14 12 31 31 H 1.00899 * 111.00206 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.43602 * 72.74884 * 16 12 11 33 33 H 1.08994 * 109.43907 * 192.67250 * 16 12 11 34 34 H 1.07998 * 119.76266 * 0.40316 * 18 17 16 35 35 H 1.07997 * 120.05588 * 180.25401 * 19 18 17 36 36 H 1.07993 * 120.01744 * 179.59304 * 20 19 18 37 37 H 1.08001 * 119.78578 * 180.37391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2005 -3.6126 0.1296 11 6 2.8107 -3.6303 1.4606 12 6 1.7592 -4.0938 2.4765 13 1 0.8513 -3.5012 2.3638 14 6 2.3068 -3.9365 3.8964 15 7 1.2547 -4.2681 4.8665 16 6 1.4541 -5.5678 2.1997 17 6 1.2251 -5.7698 0.7229 18 6 0.6220 -6.9478 0.3105 19 6 0.3911 -7.1843 -1.0300 20 6 0.7733 -6.2457 -1.9713 21 6 1.3707 -5.0710 -1.5685 22 6 1.6006 -4.8231 -0.2139 23 1 -0.4850 0.8400 -0.0004 24 1 0.6983 -2.5995 -0.9334 25 1 0.5546 -2.5165 0.8388 26 1 3.6545 -4.3204 1.4670 27 1 3.1553 -2.6289 1.7183 28 1 3.1541 -4.6078 4.0355 29 1 2.6303 -2.9068 4.0491 30 1 0.8928 -5.1958 4.7044 31 1 1.5920 -4.1722 5.8126 32 1 2.2964 -6.1795 2.5232 33 1 0.5598 -5.8624 2.7487 34 1 0.3263 -7.6839 1.0434 35 1 -0.0829 -8.1027 -1.3434 36 1 0.5997 -6.4315 -3.0209 37 1 1.6625 -4.3373 -2.3053 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328486101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:49 Heat of formation + Delta-G solvation = 21.574615 kcal Electronic energy + Delta-G solvation = -18089.402967 eV Core-core repulsion = 15444.658644 eV Total energy + Delta-G solvation = -2644.744323 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.05926 -36.85223 -35.12093 -32.78738 -32.11238 -29.83245 -29.27389 -27.02220 -25.03299 -24.05462 -22.34965 -21.23387 -21.03466 -18.75509 -16.65231 -16.01617 -15.85744 -15.29470 -15.13787 -14.68490 -14.15224 -13.81991 -13.35848 -13.22157 -13.14888 -12.90137 -12.52957 -11.98767 -11.83458 -11.44311 -11.16500 -10.99668 -10.79395 -10.77016 -10.60768 -10.36110 -10.07340 -9.89423 -9.42757 -8.58516 -8.53826 -8.43170 -8.22577 -7.01320 -6.05724 -4.08438 1.83975 1.92153 3.30732 3.36921 3.39965 4.20886 4.40454 4.68958 4.80769 5.05956 5.11588 5.29470 5.36425 5.40736 5.48105 5.62412 5.68313 5.82883 5.87448 5.96507 6.05718 6.18380 6.24268 6.36617 6.50233 6.61134 6.76798 6.84174 6.97975 7.00120 7.23247 7.25895 7.33958 7.44868 7.53156 7.79473 8.06461 8.12612 8.54511 8.98271 9.55765 11.04506 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.008339 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.153064 B = 3357.045735 C = 4485.154457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.200 3.800 10 N -0.499 5.499 11 C 0.072 3.928 12 C -0.125 4.125 13 H 0.093 0.907 14 C 0.075 3.925 15 N -0.849 5.849 16 C -0.067 4.067 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.156 4.156 20 C -0.111 4.111 21 C -0.126 4.126 22 C 0.139 3.861 23 H 0.262 0.738 24 H 0.030 0.970 25 H 0.011 0.989 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.022 0.978 29 H 0.076 0.924 30 H 0.336 0.664 31 H 0.336 0.664 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.796 -12.112 4.317 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.213 5.213 11 C -0.056 4.056 12 C -0.145 4.145 13 H 0.111 0.889 14 C -0.057 4.057 15 N -0.379 5.379 16 C -0.105 4.105 17 C -0.138 4.138 18 C -0.124 4.124 19 C -0.174 4.174 20 C -0.129 4.129 21 C -0.146 4.146 22 C 0.041 3.959 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.040 0.960 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.641 -11.191 3.676 12.072 hybrid contribution 0.423 -0.021 0.748 0.860 sum 3.064 -11.212 4.424 12.437 Atomic orbital electron populations 1.69959 1.06041 1.26924 1.50363 1.24975 0.94850 0.99278 0.95247 0.86494 0.79698 0.83056 0.78142 1.20627 1.21254 1.19820 1.21126 0.93540 0.89697 1.50842 0.91742 1.19906 0.89327 0.85858 0.97105 1.58832 1.34016 1.02200 1.26287 1.22073 0.95093 1.02382 0.86094 1.21859 1.02073 0.96143 0.94446 0.88885 1.21744 0.91558 1.00772 0.91576 1.58708 1.38691 1.34083 1.06387 1.20511 1.00897 0.96815 0.92239 1.19911 1.02199 0.96571 0.95094 1.20831 0.99507 0.96332 0.95758 1.20836 1.03650 0.99728 0.93231 1.20888 0.98982 0.94097 0.98973 1.21109 1.01077 0.97470 0.94922 1.18858 0.92497 0.91697 0.92858 0.92794 0.95160 0.97116 0.92393 0.88841 0.95980 0.90577 0.85135 0.85206 0.91784 0.91250 0.87101 0.86973 0.86633 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -14.16 8.27 -34.44 -0.28 -14.44 16 8 H 0.06 1.76 7.59 -52.49 -0.40 1.36 16 9 C 0.20 5.17 4.54 -4.98 -0.02 5.15 16 10 N -0.50 -10.97 4.46 -172.65 -0.77 -11.73 16 11 C 0.07 1.39 5.01 -3.88 -0.02 1.37 16 12 C -0.13 -2.16 2.45 -90.40 -0.22 -2.38 16 13 H 0.09 1.98 6.33 -51.93 -0.33 1.65 16 14 C 0.07 1.07 6.25 -3.83 -0.02 1.05 16 15 N -0.85 -10.98 9.62 -10.37 -0.10 -11.08 16 16 C -0.07 -1.04 4.64 -27.81 -0.13 -1.17 16 17 C -0.13 -2.37 5.74 -104.38 -0.60 -2.97 16 18 C -0.11 -1.63 9.63 -39.50 -0.38 -2.01 16 19 C -0.16 -2.31 10.05 -39.62 -0.40 -2.71 16 20 C -0.11 -1.76 10.04 -39.71 -0.40 -2.16 16 21 C -0.13 -2.38 9.16 -39.23 -0.36 -2.74 16 22 C 0.14 2.80 5.11 -83.85 -0.43 2.37 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.03 0.85 7.46 -51.93 -0.39 0.46 16 25 H 0.01 0.31 6.27 -51.93 -0.33 -0.02 16 26 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 27 H 0.09 1.92 6.94 -51.93 -0.36 1.56 16 28 H 0.02 0.28 8.07 -51.93 -0.42 -0.14 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.34 3.88 7.66 -39.29 -0.30 3.58 16 31 H 0.34 3.53 9.08 -39.29 -0.36 3.17 16 32 H 0.06 0.88 8.03 -51.93 -0.42 0.46 16 33 H 0.07 0.98 7.35 -51.93 -0.38 0.60 16 34 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -29.86 296.15 -9.40 -39.26 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.35 Total: 7.42 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -3.36 Total: -19.10 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.13 Total: -48.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.86 -9.40 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328486101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.834 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds