Wall clock time and date at job start Mon Mar 30 2020 03:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99824 * 2 1 4 4 H 1.48497 * 109.46985 * 269.99893 * 3 2 1 5 5 H 1.48502 * 109.46818 * 30.00114 * 3 2 1 6 6 H 1.48501 * 109.47030 * 150.00229 * 3 2 1 7 7 C 1.37878 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99684 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47414 * 185.32204 * 9 7 2 11 11 C 1.46431 * 110.99828 * 68.86662 * 10 9 7 12 12 C 1.53381 * 108.66227 * 72.19589 * 11 10 9 13 13 H 1.09004 * 109.76840 * 308.56756 * 12 11 10 14 14 C 1.52996 * 109.76848 * 187.83797 * 12 11 10 15 15 N 1.46900 * 109.47093 * 174.99602 * 14 12 11 16 16 C 1.53047 * 107.93444 * 68.22933 * 12 11 10 17 17 C 1.50802 * 109.65384 * 312.69599 * 16 12 11 18 18 C 1.38618 * 118.11727 * 195.48021 * 17 16 12 19 19 C 1.38064 * 120.48181 * 180.11504 * 18 17 16 20 20 C 1.38315 * 119.88707 * 0.53147 * 19 18 17 21 21 C 1.37809 * 119.95232 * 359.32827 * 20 19 18 22 22 C 1.38376 * 122.01696 * 15.66161 * 17 16 12 23 23 H 0.96997 * 120.00116 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47619 * 65.32223 * 9 7 2 25 25 H 1.09006 * 109.47498 * 305.32457 * 9 7 2 26 26 H 1.09005 * 109.60613 * 191.94512 * 11 10 9 27 27 H 1.08993 * 109.60681 * 312.27649 * 11 10 9 28 28 H 1.08994 * 109.47387 * 295.00374 * 14 12 11 29 29 H 1.09007 * 109.47217 * 55.00325 * 14 12 11 30 30 H 1.00900 * 110.99830 * 56.05001 * 15 14 12 31 31 H 1.00899 * 111.00206 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.43602 * 72.74884 * 16 12 11 33 33 H 1.08994 * 109.43907 * 192.67250 * 16 12 11 34 34 H 1.07998 * 119.76266 * 0.40316 * 18 17 16 35 35 H 1.07997 * 120.05588 * 180.25401 * 19 18 17 36 36 H 1.07993 * 120.01744 * 179.59304 * 20 19 18 37 37 H 1.08001 * 119.78578 * 180.37391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2005 -3.6126 0.1296 11 6 2.8107 -3.6303 1.4606 12 6 1.7592 -4.0938 2.4765 13 1 0.8513 -3.5012 2.3638 14 6 2.3068 -3.9365 3.8964 15 7 1.2547 -4.2681 4.8665 16 6 1.4541 -5.5678 2.1997 17 6 1.2251 -5.7698 0.7229 18 6 0.6220 -6.9478 0.3105 19 6 0.3911 -7.1843 -1.0300 20 6 0.7733 -6.2457 -1.9713 21 6 1.3707 -5.0710 -1.5685 22 6 1.6006 -4.8231 -0.2139 23 1 -0.4850 0.8400 -0.0004 24 1 0.6983 -2.5995 -0.9334 25 1 0.5546 -2.5165 0.8388 26 1 3.6545 -4.3204 1.4670 27 1 3.1553 -2.6289 1.7183 28 1 3.1541 -4.6078 4.0355 29 1 2.6303 -2.9068 4.0491 30 1 0.8928 -5.1958 4.7044 31 1 1.5920 -4.1722 5.8126 32 1 2.2964 -6.1795 2.5232 33 1 0.5598 -5.8624 2.7487 34 1 0.3263 -7.6839 1.0434 35 1 -0.0829 -8.1027 -1.3434 36 1 0.5997 -6.4315 -3.0209 37 1 1.6625 -4.3373 -2.3053 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328486101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:48 Heat of formation + Delta-G solvation = 1.300880 kcal Electronic energy + Delta-G solvation = -18090.282102 eV Core-core repulsion = 15444.658644 eV Total energy + Delta-G solvation = -2645.623458 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.49161 -38.19497 -36.57847 -34.72619 -33.50906 -31.17474 -30.74998 -28.90417 -26.36420 -25.68411 -24.02267 -22.65079 -22.39996 -20.20272 -18.53210 -17.63321 -17.17132 -16.89048 -16.43687 -16.26097 -15.64409 -15.20230 -14.80089 -14.70916 -14.47535 -14.34973 -14.01701 -13.71758 -13.22340 -13.03166 -12.84251 -12.56606 -12.48592 -12.31844 -12.17371 -12.09616 -11.70929 -11.45701 -11.26047 -10.65164 -10.05225 -9.58568 -9.52650 -8.60451 -8.22877 -6.34290 0.52929 0.56776 1.39276 1.40920 1.52097 2.37749 2.87504 3.09641 3.25087 3.60739 3.76933 3.82200 4.12347 4.16671 4.26026 4.39931 4.44575 4.48582 4.62317 4.69054 4.72276 4.84859 4.94156 5.00041 5.05700 5.13885 5.17355 5.30992 5.43916 5.55310 5.61289 5.65748 5.69704 6.00503 6.14158 6.24473 6.32153 6.66412 6.78843 6.85081 7.35160 8.87818 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.008339 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.153064 B = 3357.045735 C = 4485.154457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.224 3.776 10 N -0.511 5.511 11 C 0.072 3.928 12 C -0.116 4.116 13 H 0.043 0.957 14 C 0.083 3.917 15 N -0.860 5.860 16 C -0.060 4.060 17 C -0.144 4.144 18 C -0.105 4.105 19 C -0.143 4.143 20 C -0.111 4.111 21 C -0.151 4.151 22 C 0.096 3.904 23 H 0.265 0.735 24 H -0.004 1.004 25 H -0.022 1.022 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.347 0.653 31 H 0.352 0.648 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.142 0.858 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -14.292 5.226 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.101 3.899 10 N -0.226 5.226 11 C -0.056 4.056 12 C -0.137 4.137 13 H 0.061 0.939 14 C -0.048 4.048 15 N -0.392 5.392 16 C -0.097 4.097 17 C -0.147 4.147 18 C -0.123 4.123 19 C -0.162 4.162 20 C -0.130 4.130 21 C -0.171 4.171 22 C -0.001 4.001 23 H 0.074 0.926 24 H 0.014 0.986 25 H -0.005 1.005 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.199 -13.411 4.595 14.533 hybrid contribution 0.188 0.526 0.424 0.701 sum 3.387 -12.885 5.019 14.237 Atomic orbital electron populations 1.70097 1.07782 1.27979 1.51305 1.25911 0.95711 1.03170 0.94576 0.85375 0.78602 0.78132 0.78475 1.19860 1.20659 1.18654 1.21412 0.93575 0.90817 1.50664 0.91876 1.19380 0.89240 0.87484 0.93830 1.58699 1.33475 1.02229 1.28159 1.22074 0.96173 1.01687 0.85648 1.21664 0.99189 0.96956 0.95852 0.93867 1.21564 0.92565 1.00660 0.90012 1.58602 1.38526 1.35004 1.07063 1.20528 1.02733 0.95320 0.91132 1.20246 1.01834 0.96751 0.95840 1.21268 0.98098 0.95941 0.97024 1.21343 1.01706 1.00371 0.92739 1.21216 0.97838 0.93013 1.00917 1.21194 1.02743 0.98707 0.94449 1.19073 0.95273 0.91718 0.94041 0.92621 0.98597 1.00456 0.90229 0.91226 0.93207 0.92194 0.83963 0.83416 0.88987 0.89529 0.83443 0.82970 0.83987 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.53 -30.55 8.27 25.60 0.21 -30.34 16 8 H 0.06 3.59 7.59 -2.91 -0.02 3.57 16 9 C 0.22 12.49 4.54 85.56 0.39 12.88 16 10 N -0.51 -23.69 4.46 -700.15 -3.12 -26.81 16 11 C 0.07 2.87 5.01 86.52 0.43 3.30 16 12 C -0.12 -4.06 2.45 -10.65 -0.03 -4.09 16 13 H 0.04 1.95 6.33 -2.38 -0.02 1.93 16 14 C 0.08 2.31 6.25 86.30 0.54 2.85 16 15 N -0.86 -20.85 9.62 -186.72 -1.80 -22.64 16 16 C -0.06 -1.73 4.64 29.90 0.14 -1.59 16 17 C -0.14 -4.89 5.74 -19.71 -0.11 -5.00 16 18 C -0.10 -2.88 9.63 22.32 0.21 -2.66 16 19 C -0.14 -3.73 10.05 22.25 0.22 -3.51 16 20 C -0.11 -3.39 10.04 22.19 0.22 -3.16 16 21 C -0.15 -5.90 9.16 22.50 0.21 -5.69 16 22 C 0.10 3.98 5.11 38.30 0.20 4.17 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H 0.00 -0.25 7.46 -2.39 -0.02 -0.27 16 25 H -0.02 -1.36 6.27 -2.38 -0.01 -1.37 16 26 H 0.08 2.77 8.11 -2.38 -0.02 2.75 16 27 H 0.07 3.03 6.94 -2.39 -0.02 3.01 16 28 H 0.05 1.12 8.07 -2.39 -0.02 1.10 16 29 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.35 7.14 7.66 -89.69 -0.69 6.45 16 31 H 0.35 6.66 9.08 -89.69 -0.81 5.85 16 32 H 0.09 2.17 8.03 -2.39 -0.02 2.15 16 33 H 0.09 2.20 7.35 -2.39 -0.02 2.18 16 34 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -69.00 296.15 0.06 -68.93 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.43 Total: 22.66 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 3.10 Total: -32.10 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -4.63 Total: -106.47 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.00 0.06 -68.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328486101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.236 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds