Wall clock time and date at job start Mon Mar 30 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47085 * 270.00275 * 3 2 1 5 5 H 1.48498 * 109.47008 * 30.00136 * 3 2 1 6 6 H 1.48496 * 109.46701 * 150.00333 * 3 2 1 7 7 C 1.37876 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99747 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00180 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47322 * 185.24171 * 9 7 2 11 11 C 1.47900 * 111.00044 * 175.78399 * 10 9 7 12 12 C 1.53998 * 107.05970 * 214.15608 * 11 10 9 13 13 C 1.54599 * 105.13846 * 1.22425 * 12 11 10 14 14 H 1.08991 * 110.72552 * 263.60293 * 13 12 11 15 15 C 1.52997 * 110.72209 * 140.49116 * 13 12 11 16 16 C 1.50709 * 109.46839 * 66.45761 * 15 13 12 17 17 C 1.38654 * 120.78600 * 269.71699 * 16 15 13 18 18 C 1.38203 * 119.15689 * 179.75385 * 17 16 15 19 19 N 1.31873 * 120.76349 * 0.53395 * 18 17 16 20 20 C 1.31863 * 121.72863 * 359.74231 * 19 18 17 21 21 C 1.38204 * 120.76318 * 359.97438 * 20 19 18 22 22 C 1.48533 * 110.99998 * 58.38714 * 10 9 7 23 23 H 0.97008 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47570 * 65.23707 * 9 7 2 25 25 H 1.09000 * 109.47132 * 305.23901 * 9 7 2 26 26 H 1.09007 * 109.91571 * 94.80421 * 11 10 9 27 27 H 1.08998 * 109.91729 * 333.51146 * 11 10 9 28 28 H 1.08990 * 110.30675 * 120.14165 * 12 11 10 29 29 H 1.09002 * 110.30587 * 242.31304 * 12 11 10 30 30 H 1.08996 * 109.47243 * 186.45641 * 15 13 12 31 31 H 1.08997 * 109.47310 * 306.45880 * 15 13 12 32 32 H 1.07995 * 120.41872 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.61722 * 180.24780 * 18 17 16 34 34 H 1.08005 * 119.61965 * 179.97438 * 20 19 18 35 35 H 1.08009 * 120.41892 * 180.02562 * 21 20 19 36 36 H 1.09002 * 110.66318 * 41.28947 * 22 10 9 37 37 H 1.08994 * 110.67264 * 278.16043 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5733 -0.1281 11 6 5.4760 -2.6045 -0.2335 12 6 5.8375 -3.7740 -1.1679 13 6 4.4820 -4.3757 -1.6046 14 1 4.2211 -5.2311 -0.9816 15 6 4.5173 -4.7745 -3.0813 16 6 5.4865 -5.9129 -3.2712 17 6 6.8213 -5.6684 -3.5561 18 6 7.6818 -6.7376 -3.7186 19 7 7.2442 -7.9773 -3.6159 20 6 5.9808 -8.2471 -3.3516 21 6 5.0635 -7.2294 -3.1708 22 6 3.4927 -3.2061 -1.3720 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.7639 0.9320 25 1 3.8745 -0.6010 -0.8405 26 1 5.9152 -2.7663 0.7509 27 1 5.8381 -1.6668 -0.6550 28 1 6.3865 -3.4090 -2.0358 29 1 6.4266 -4.5182 -0.6320 30 1 3.5223 -5.0881 -3.3969 31 1 4.8365 -3.9217 -3.6804 32 1 7.1847 -4.6554 -3.6455 33 1 8.7238 -6.5557 -3.9367 34 1 5.6592 -9.2754 -3.2755 35 1 4.0301 -7.4567 -2.9541 36 1 3.5271 -2.5022 -2.2035 37 1 2.4801 -3.5820 -1.2264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368485485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:01 Heat of formation + Delta-G solvation = 30.711417 kcal Electronic energy + Delta-G solvation = -17304.661736 eV Core-core repulsion = 14660.313614 eV Total energy + Delta-G solvation = -2644.348122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.33829 -38.46956 -34.74067 -32.80079 -31.33527 -31.14714 -29.28711 -27.12536 -25.79723 -23.57628 -22.35066 -21.82514 -20.00753 -19.77447 -16.94443 -16.61449 -16.35846 -15.72929 -15.29937 -15.06240 -14.16734 -13.90123 -13.79580 -13.62860 -13.12603 -12.75846 -12.61643 -12.50706 -11.98177 -11.79276 -11.57721 -11.23035 -10.78329 -10.64630 -10.47553 -10.38094 -10.21720 -9.80546 -9.57908 -9.46827 -9.26157 -9.23982 -8.61618 -7.50846 -6.09016 -4.07040 1.02956 1.16818 3.24956 3.33285 3.35942 3.70941 4.34093 4.38864 4.51848 4.61588 4.77644 5.00055 5.00528 5.05662 5.15629 5.23268 5.28140 5.44142 5.56985 5.61214 5.69812 5.73963 5.88963 5.98543 6.04329 6.12591 6.20727 6.30428 6.39907 6.58146 6.61021 6.66484 6.77419 6.97135 7.50181 7.85772 7.86358 7.92335 8.60702 8.98667 9.52908 11.03980 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.047577 B = 0.004413 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.376686 B = 6343.670035 C = 6618.839510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.081 0.919 9 C 0.154 3.846 10 N -0.508 5.508 11 C 0.031 3.969 12 C -0.122 4.122 13 C -0.089 4.089 14 H 0.080 0.920 15 C -0.078 4.078 16 C -0.025 4.025 17 C -0.170 4.170 18 C 0.096 3.904 19 N -0.495 5.495 20 C 0.097 3.903 21 C -0.172 4.172 22 C 0.061 3.939 23 H 0.264 0.736 24 H 0.029 0.971 25 H -0.014 1.014 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.041 0.959 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.902 -11.273 -7.618 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.099 0.901 9 C 0.027 3.973 10 N -0.232 5.232 11 C -0.098 4.098 12 C -0.160 4.160 13 C -0.108 4.108 14 H 0.099 0.901 15 C -0.115 4.115 16 C -0.033 4.033 17 C -0.190 4.190 18 C -0.061 4.061 19 N -0.205 5.205 20 C -0.060 4.060 21 C -0.192 4.192 22 C -0.067 4.067 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.003 0.997 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.153 0.847 36 H 0.059 0.941 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.146 -12.093 -7.250 19.278 hybrid contribution 0.054 2.229 -0.532 2.292 sum 13.200 -9.865 -7.782 18.224 Atomic orbital electron populations 1.69897 1.06126 1.26882 1.50911 1.24911 0.94743 0.98871 0.94728 0.86851 0.80392 0.84018 0.78448 1.20362 1.21088 1.19212 1.21040 0.88682 0.94806 1.50658 0.90144 1.20340 0.97164 0.84461 0.95304 1.64702 1.03401 1.20561 1.34549 1.22866 0.91469 0.96592 0.98868 1.22463 0.97012 0.97669 0.98838 1.22130 0.96003 0.99059 0.93642 0.90134 1.20719 0.97990 0.95410 0.97402 1.20407 0.94628 0.95076 0.93160 1.22093 0.93934 1.00828 1.02159 1.22717 0.99992 0.87776 0.95581 1.67651 1.16900 1.23042 1.12873 1.22727 0.88623 0.99647 0.94998 1.22107 1.01620 0.93073 1.02352 1.23020 0.98406 0.93641 0.91656 0.92630 0.95337 0.99668 0.91369 0.94696 0.92047 0.91899 0.90063 0.90464 0.84951 0.83053 0.82974 0.84725 0.94094 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.44 27.37 -169.99 -4.65 16.79 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.34 6.70 56.52 0.38 -5.96 16 7 C -0.51 -14.52 9.10 -34.44 -0.31 -14.84 16 8 H 0.08 2.46 7.28 -52.48 -0.38 2.08 16 9 C 0.15 3.76 3.67 -4.98 -0.02 3.74 16 10 N -0.51 -10.64 5.34 -231.89 -1.24 -11.88 16 11 C 0.03 0.52 6.70 -2.75 -0.02 0.50 16 12 C -0.12 -1.66 5.65 -25.37 -0.14 -1.81 16 13 C -0.09 -1.25 3.07 -88.76 -0.27 -1.53 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.08 -0.90 4.82 -27.88 -0.13 -1.03 16 16 C -0.02 -0.27 4.91 -104.31 -0.51 -0.78 16 17 C -0.17 -1.75 9.01 -39.44 -0.36 -2.11 16 18 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 19 N -0.50 -5.88 10.36 -13.25 -0.14 -6.02 16 20 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 21 C -0.17 -1.78 9.82 -39.44 -0.39 -2.17 16 22 C 0.06 1.13 5.16 -1.90 -0.01 1.12 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.03 0.71 7.56 -51.93 -0.39 0.32 16 25 H -0.01 -0.35 7.11 -51.93 -0.37 -0.72 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.59 7.67 -51.93 -0.40 0.19 16 28 H 0.06 0.75 6.84 -51.93 -0.36 0.39 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 32 H 0.13 1.16 7.38 -52.49 -0.39 0.78 16 33 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.04 0.78 7.93 -51.93 -0.41 0.37 16 37 H 0.08 1.68 7.45 -51.93 -0.39 1.29 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -31.40 299.95 -9.01 -40.41 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.62 Total: -1.85 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.66 Total: -15.39 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.60 Total: -44.48 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.65 Total: 16.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.40 -9.01 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368485485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.121 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds