Wall clock time and date at job start Mon Mar 30 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47085 * 270.00275 * 3 2 1 5 5 H 1.48498 * 109.47008 * 30.00136 * 3 2 1 6 6 H 1.48496 * 109.46701 * 150.00333 * 3 2 1 7 7 C 1.37876 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99747 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00180 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47322 * 185.24171 * 9 7 2 11 11 C 1.47900 * 111.00044 * 175.78399 * 10 9 7 12 12 C 1.53998 * 107.05970 * 214.15608 * 11 10 9 13 13 C 1.54599 * 105.13846 * 1.22425 * 12 11 10 14 14 H 1.08991 * 110.72552 * 263.60293 * 13 12 11 15 15 C 1.52997 * 110.72209 * 140.49116 * 13 12 11 16 16 C 1.50709 * 109.46839 * 66.45761 * 15 13 12 17 17 C 1.38654 * 120.78600 * 269.71699 * 16 15 13 18 18 C 1.38203 * 119.15689 * 179.75385 * 17 16 15 19 19 N 1.31873 * 120.76349 * 0.53395 * 18 17 16 20 20 C 1.31863 * 121.72863 * 359.74231 * 19 18 17 21 21 C 1.38204 * 120.76318 * 359.97438 * 20 19 18 22 22 C 1.48533 * 110.99998 * 58.38714 * 10 9 7 23 23 H 0.97008 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47570 * 65.23707 * 9 7 2 25 25 H 1.09000 * 109.47132 * 305.23901 * 9 7 2 26 26 H 1.09007 * 109.91571 * 94.80421 * 11 10 9 27 27 H 1.08998 * 109.91729 * 333.51146 * 11 10 9 28 28 H 1.08990 * 110.30675 * 120.14165 * 12 11 10 29 29 H 1.09002 * 110.30587 * 242.31304 * 12 11 10 30 30 H 1.08996 * 109.47243 * 186.45641 * 15 13 12 31 31 H 1.08997 * 109.47310 * 306.45880 * 15 13 12 32 32 H 1.07995 * 120.41872 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.61722 * 180.24780 * 18 17 16 34 34 H 1.08005 * 119.61965 * 179.97438 * 20 19 18 35 35 H 1.08009 * 120.41892 * 180.02562 * 21 20 19 36 36 H 1.09002 * 110.66318 * 41.28947 * 22 10 9 37 37 H 1.08994 * 110.67264 * 278.16043 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5733 -0.1281 11 6 5.4760 -2.6045 -0.2335 12 6 5.8375 -3.7740 -1.1679 13 6 4.4820 -4.3757 -1.6046 14 1 4.2211 -5.2311 -0.9816 15 6 4.5173 -4.7745 -3.0813 16 6 5.4865 -5.9129 -3.2712 17 6 6.8213 -5.6684 -3.5561 18 6 7.6818 -6.7376 -3.7186 19 7 7.2442 -7.9773 -3.6159 20 6 5.9808 -8.2471 -3.3516 21 6 5.0635 -7.2294 -3.1708 22 6 3.4927 -3.2061 -1.3720 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.7639 0.9320 25 1 3.8745 -0.6010 -0.8405 26 1 5.9152 -2.7663 0.7509 27 1 5.8381 -1.6668 -0.6550 28 1 6.3865 -3.4090 -2.0358 29 1 6.4266 -4.5182 -0.6320 30 1 3.5223 -5.0881 -3.3969 31 1 4.8365 -3.9217 -3.6804 32 1 7.1847 -4.6554 -3.6455 33 1 8.7238 -6.5557 -3.9367 34 1 5.6592 -9.2754 -3.2755 35 1 4.0301 -7.4567 -2.9541 36 1 3.5271 -2.5022 -2.2035 37 1 2.4801 -3.5820 -1.2264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368485485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:01 Heat of formation + Delta-G solvation = 10.024047 kcal Electronic energy + Delta-G solvation = -17305.558807 eV Core-core repulsion = 14660.313614 eV Total energy + Delta-G solvation = -2645.245193 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16639 -39.81410 -35.99258 -34.68998 -32.63654 -32.04861 -30.58303 -28.82123 -27.09823 -24.36070 -23.89142 -22.92123 -21.63068 -20.95142 -18.94081 -17.55232 -17.20003 -16.78637 -16.64809 -16.41311 -15.82597 -15.23583 -14.83588 -14.53411 -14.47009 -14.42770 -13.99647 -13.80099 -13.34981 -13.12486 -12.95587 -12.54913 -12.41769 -12.04709 -11.97583 -11.80358 -11.57349 -11.53906 -11.28036 -10.81678 -10.39360 -10.33327 -10.00977 -9.14611 -8.31046 -6.35363 0.28017 0.35977 1.32168 1.34754 1.45913 2.32293 2.92091 3.02578 3.32030 3.53151 3.67032 3.78031 3.91793 4.04034 4.11183 4.26666 4.30032 4.39892 4.54438 4.55753 4.70212 4.74471 4.83657 4.86656 4.90869 4.94117 4.98662 5.03951 5.13701 5.18939 5.26736 5.38885 5.51086 5.54853 5.86380 5.96167 6.22351 6.59693 6.71013 7.09600 7.29308 8.85384 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.047577 B = 0.004413 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.376686 B = 6343.670035 C = 6618.839510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.522 4.522 8 H 0.038 0.962 9 C 0.164 3.836 10 N -0.531 5.531 11 C 0.027 3.973 12 C -0.111 4.111 13 C -0.074 4.074 14 H 0.076 0.924 15 C -0.069 4.069 16 C -0.035 4.035 17 C -0.170 4.170 18 C 0.088 3.912 19 N -0.519 5.519 20 C 0.088 3.912 21 C -0.177 4.177 22 C 0.060 3.940 23 H 0.268 0.732 24 H 0.025 0.975 25 H -0.010 1.010 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.150 0.850 33 H 0.175 0.825 34 H 0.173 0.827 35 H 0.146 0.854 36 H 0.033 0.967 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.429 -11.034 -8.340 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.560 4.560 8 H 0.056 0.944 9 C 0.037 3.963 10 N -0.255 5.255 11 C -0.101 4.101 12 C -0.148 4.148 13 C -0.094 4.094 14 H 0.095 0.905 15 C -0.107 4.107 16 C -0.043 4.043 17 C -0.190 4.190 18 C -0.068 4.068 19 N -0.229 5.229 20 C -0.068 4.068 21 C -0.197 4.197 22 C -0.068 4.068 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.008 0.992 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.168 0.832 33 H 0.192 0.808 34 H 0.190 0.810 35 H 0.164 0.836 36 H 0.052 0.948 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.691 -11.879 -7.973 21.234 hybrid contribution -0.788 2.047 -0.293 2.213 sum 14.903 -9.832 -8.267 19.675 Atomic orbital electron populations 1.70049 1.08101 1.28185 1.52306 1.25852 0.95607 1.03120 0.94178 0.85708 0.79391 0.78640 0.79189 1.19077 1.20559 1.17560 1.21257 0.90999 0.93381 1.50372 0.94366 1.20089 0.94357 0.86781 0.95103 1.64576 1.06343 1.18443 1.36147 1.22982 0.88553 0.98277 1.00333 1.22428 0.96735 0.96617 0.99061 1.21970 0.94842 0.96942 0.95602 0.90523 1.20597 0.98619 0.96064 0.95375 1.20385 0.94876 0.94898 0.94156 1.22285 0.93497 1.01708 1.01494 1.23134 1.01191 0.87396 0.95082 1.67686 1.17613 1.23985 1.13588 1.23090 0.88344 1.00757 0.94620 1.22303 1.02326 0.93018 1.02053 1.22962 0.98287 0.95079 0.90500 0.92347 0.95698 0.99205 0.90657 0.94329 0.89764 0.90426 0.89885 0.89785 0.83232 0.80832 0.81022 0.83590 0.94849 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 2 C 0.01 0.59 5.47 84.65 0.46 1.05 16 3 Si 0.95 43.98 27.37 68.60 1.88 45.86 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.25 -10.98 6.70 99.48 0.67 -10.31 16 7 C -0.52 -30.39 9.10 25.60 0.23 -30.16 16 8 H 0.04 2.48 7.28 -2.91 -0.02 2.45 16 9 C 0.16 7.99 3.67 85.55 0.31 8.30 16 10 N -0.53 -22.15 5.34 -887.57 -4.74 -26.89 16 11 C 0.03 0.84 6.70 86.45 0.58 1.42 16 12 C -0.11 -2.70 5.65 31.48 0.18 -2.52 16 13 C -0.07 -1.99 3.07 -9.59 -0.03 -2.01 16 14 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.07 -1.46 4.82 29.85 0.14 -1.32 16 16 C -0.04 -0.69 4.91 -19.66 -0.10 -0.78 16 17 C -0.17 -2.99 9.01 22.36 0.20 -2.79 16 18 C 0.09 1.61 11.18 84.68 0.95 2.55 16 19 N -0.52 -11.28 10.36 -195.84 -2.03 -13.31 16 20 C 0.09 1.68 11.18 84.68 0.95 2.62 16 21 C -0.18 -3.34 9.82 22.36 0.22 -3.12 16 22 C 0.06 2.24 5.16 86.65 0.45 2.68 16 23 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 24 H 0.02 1.22 7.56 -2.38 -0.02 1.20 16 25 H -0.01 -0.46 7.11 -2.39 -0.02 -0.47 16 26 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 27 H 0.04 1.21 7.67 -2.39 -0.02 1.19 16 28 H 0.08 1.70 6.84 -2.39 -0.02 1.69 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.08 1.68 8.03 -2.39 -0.02 1.67 16 32 H 0.15 2.05 7.38 -2.91 -0.02 2.03 16 33 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.03 1.28 7.93 -2.39 -0.02 1.26 16 37 H 0.05 2.29 7.45 -2.39 -0.02 2.27 16 Total: -1.00 -68.88 299.95 0.94 -67.94 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.99 Total: 9.25 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.55 Total: -24.07 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -6.47 Total: -98.97 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -68.88 0.94 -67.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368485485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.965 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds