Wall clock time and date at job start Mon Mar 30 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99812 * 2 1 4 4 H 1.48500 * 109.46806 * 269.99598 * 3 2 1 5 5 H 1.48499 * 109.46843 * 29.99617 * 3 2 1 6 6 H 1.48495 * 109.46959 * 150.00067 * 3 2 1 7 7 C 1.37876 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00246 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99934 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.47903 * 111.00042 * 69.87690 * 10 9 7 12 12 C 1.53991 * 107.05825 * 145.84339 * 11 10 9 13 13 C 1.54601 * 105.13969 * 358.77079 * 12 11 10 14 14 H 1.09002 * 110.72265 * 96.58037 * 13 12 11 15 15 C 1.53004 * 110.72380 * 219.68731 * 13 12 11 16 16 C 1.50702 * 109.47075 * 293.54601 * 15 13 12 17 17 C 1.38650 * 120.78879 * 269.97699 * 16 15 13 18 18 C 1.38203 * 119.16168 * 180.02562 * 17 16 15 19 19 N 1.31874 * 120.76322 * 359.97438 * 18 17 16 20 20 C 1.31870 * 121.72652 * 0.02562 * 19 18 17 21 21 C 1.38200 * 120.76264 * 0.02562 * 20 19 18 22 22 C 1.48532 * 110.99435 * 187.26863 * 10 9 7 23 23 H 0.97002 * 120.00265 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46889 * 59.99805 * 9 7 2 25 25 H 1.08998 * 109.46731 * 300.00304 * 9 7 2 26 26 H 1.08998 * 109.91731 * 26.48896 * 11 10 9 27 27 H 1.09002 * 109.91111 * 265.19050 * 11 10 9 28 28 H 1.08999 * 110.30578 * 239.85813 * 12 11 10 29 29 H 1.08999 * 110.31056 * 117.68809 * 12 11 10 30 30 H 1.09004 * 109.46765 * 173.54929 * 15 13 12 31 31 H 1.08999 * 109.46911 * 53.54780 * 15 13 12 32 32 H 1.08002 * 120.42196 * 0.04097 * 17 16 15 33 33 H 1.07996 * 119.61854 * 180.25810 * 18 17 16 34 34 H 1.08001 * 119.61693 * 179.97438 * 20 19 18 35 35 H 1.08004 * 120.42054 * 179.97438 * 21 20 19 36 36 H 1.09005 * 110.66599 * 81.84839 * 22 10 9 37 37 H 1.09001 * 110.67275 * 318.71427 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2058 -3.6157 0.0027 11 6 2.9113 -3.7086 1.2993 12 6 3.1619 -5.2035 1.5710 13 6 2.5295 -5.9438 0.3701 14 1 3.2842 -6.1739 -0.3820 15 6 1.8217 -7.2192 0.8320 16 6 2.8413 -8.1988 1.3535 17 6 3.4376 -9.1207 0.5069 18 6 4.3680 -10.0038 1.0211 19 7 4.6900 -9.9758 2.2996 20 6 4.1433 -9.1130 3.1336 21 6 3.2045 -8.2002 2.6916 22 6 1.5061 -4.9142 -0.1716 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.2917 -3.2862 2.0903 27 1 3.8612 -3.1769 1.2440 28 1 2.6773 -5.5056 2.4994 29 1 4.2320 -5.4051 1.6189 30 1 1.2880 -7.6631 -0.0084 31 1 1.1138 -6.9752 1.6241 32 1 3.1785 -9.1482 -0.5412 33 1 4.8402 -10.7222 0.3674 34 1 4.4319 -9.1203 4.1743 35 1 2.7599 -7.4963 3.3796 36 1 1.2952 -5.0993 -1.2249 37 1 0.5882 -4.9387 0.4157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368485486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:03 Heat of formation + Delta-G solvation = 26.649611 kcal Electronic energy + Delta-G solvation = -17189.744777 eV Core-core repulsion = 14545.220523 eV Total energy + Delta-G solvation = -2644.524255 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.34133 -38.37267 -34.70126 -32.82912 -31.32788 -30.95891 -29.03816 -27.14631 -25.29785 -23.59556 -22.47693 -22.04000 -20.17882 -19.60521 -16.74740 -16.40854 -16.20335 -15.75698 -15.40816 -15.02193 -14.26132 -13.84510 -13.75270 -13.42224 -13.10029 -12.92680 -12.52290 -12.17073 -11.81853 -11.63812 -11.53552 -11.00844 -10.72287 -10.66585 -10.49669 -10.43323 -10.12506 -9.88901 -9.58861 -9.46699 -9.26352 -9.18223 -8.43665 -7.34429 -6.03549 -4.04863 1.02584 1.15987 3.31860 3.37549 3.41591 3.70398 4.33875 4.41910 4.50728 4.61190 4.85177 4.99791 5.01427 5.07125 5.18769 5.30527 5.39626 5.46903 5.59279 5.66664 5.70279 5.73115 5.89372 5.95269 6.10214 6.16720 6.26311 6.33308 6.52289 6.60375 6.64319 6.68738 7.17929 7.29049 7.78259 7.85512 8.00794 8.17733 8.50918 9.03214 9.59684 11.07518 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.053621 B = 0.004000 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.057197 B = 6998.785358 C = 7198.950772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.184 3.816 10 N -0.515 5.515 11 C 0.049 3.951 12 C -0.126 4.126 13 C -0.084 4.084 14 H 0.080 0.920 15 C -0.078 4.078 16 C -0.026 4.026 17 C -0.173 4.173 18 C 0.096 3.904 19 N -0.495 5.495 20 C 0.097 3.903 21 C -0.169 4.169 22 C 0.039 3.961 23 H 0.261 0.739 24 H 0.030 0.970 25 H -0.007 1.007 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.072 0.928 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.730 -17.446 3.549 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.059 3.941 10 N -0.240 5.240 11 C -0.079 4.079 12 C -0.164 4.164 13 C -0.103 4.103 14 H 0.098 0.902 15 C -0.115 4.115 16 C -0.034 4.034 17 C -0.192 4.192 18 C -0.060 4.060 19 N -0.204 5.204 20 C -0.060 4.060 21 C -0.189 4.189 22 C -0.089 4.089 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.011 0.989 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.152 0.848 36 H 0.090 0.910 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.551 -17.789 3.443 18.950 hybrid contribution -0.862 1.518 0.329 1.777 sum 4.688 -16.270 3.772 17.347 Atomic orbital electron populations 1.69955 1.06071 1.26773 1.51160 1.24995 0.94871 0.99344 0.95444 0.86493 0.79708 0.83040 0.78154 1.20598 1.21308 1.19853 1.21146 0.93525 0.89929 1.49896 0.91962 1.19894 0.90215 0.87883 0.96137 1.64838 1.27303 1.02088 1.29752 1.22651 0.99676 0.93738 0.91831 1.22546 1.00329 0.96182 0.97312 1.22049 0.97847 0.92647 0.97749 0.90179 1.20735 0.95593 0.93853 1.01337 1.20384 0.95354 0.94247 0.93379 1.22078 0.98985 0.97075 1.01096 1.22720 0.94444 0.97042 0.91839 1.67657 1.25534 1.22909 1.04319 1.22731 0.92844 0.90937 0.99464 1.22113 0.99890 1.00608 0.96258 1.23194 0.94967 0.90521 1.00240 0.92930 0.95231 0.98936 0.94053 0.91276 0.92173 0.92028 0.90348 0.90444 0.84844 0.83006 0.82979 0.84835 0.90960 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.41 8.82 -34.44 -0.30 -14.72 16 8 H 0.06 1.77 7.78 -52.49 -0.41 1.36 16 9 C 0.18 4.85 4.52 -4.97 -0.02 4.82 16 10 N -0.52 -11.19 5.26 -231.89 -1.22 -12.41 16 11 C 0.05 0.95 6.15 -2.75 -0.02 0.94 16 12 C -0.13 -1.85 5.65 -25.37 -0.14 -1.99 16 13 C -0.08 -1.16 3.08 -88.75 -0.27 -1.43 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.08 -0.85 4.81 -27.88 -0.13 -0.99 16 16 C -0.03 -0.28 4.91 -104.32 -0.51 -0.79 16 17 C -0.17 -1.73 9.82 -39.44 -0.39 -2.12 16 18 C 0.10 0.99 11.18 -17.55 -0.20 0.80 16 19 N -0.49 -5.88 10.36 -13.25 -0.14 -6.02 16 20 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 21 C -0.17 -1.76 9.00 -39.44 -0.36 -2.12 16 22 C 0.04 0.68 5.98 -1.90 -0.01 0.67 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 24 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 25 H -0.01 -0.20 7.81 -51.93 -0.41 -0.60 16 26 H 0.04 0.85 7.57 -51.93 -0.39 0.46 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 0.79 6.81 -51.93 -0.35 0.44 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.22 7.35 -52.48 -0.39 0.84 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.64 7.93 -51.93 -0.41 0.23 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -31.34 304.89 -9.41 -40.75 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.71 Total: -2.90 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.65 Total: -14.64 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.62 Total: -44.56 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.34 -9.41 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368485486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.396 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds