Wall clock time and date at job start Mon Mar 30 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99812 * 2 1 4 4 H 1.48500 * 109.46806 * 269.99598 * 3 2 1 5 5 H 1.48499 * 109.46843 * 29.99617 * 3 2 1 6 6 H 1.48495 * 109.46959 * 150.00067 * 3 2 1 7 7 C 1.37876 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00246 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99934 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.47903 * 111.00042 * 69.87690 * 10 9 7 12 12 C 1.53991 * 107.05825 * 145.84339 * 11 10 9 13 13 C 1.54601 * 105.13969 * 358.77079 * 12 11 10 14 14 H 1.09002 * 110.72265 * 96.58037 * 13 12 11 15 15 C 1.53004 * 110.72380 * 219.68731 * 13 12 11 16 16 C 1.50702 * 109.47075 * 293.54601 * 15 13 12 17 17 C 1.38650 * 120.78879 * 269.97699 * 16 15 13 18 18 C 1.38203 * 119.16168 * 180.02562 * 17 16 15 19 19 N 1.31874 * 120.76322 * 359.97438 * 18 17 16 20 20 C 1.31870 * 121.72652 * 0.02562 * 19 18 17 21 21 C 1.38200 * 120.76264 * 0.02562 * 20 19 18 22 22 C 1.48532 * 110.99435 * 187.26863 * 10 9 7 23 23 H 0.97002 * 120.00265 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46889 * 59.99805 * 9 7 2 25 25 H 1.08998 * 109.46731 * 300.00304 * 9 7 2 26 26 H 1.08998 * 109.91731 * 26.48896 * 11 10 9 27 27 H 1.09002 * 109.91111 * 265.19050 * 11 10 9 28 28 H 1.08999 * 110.30578 * 239.85813 * 12 11 10 29 29 H 1.08999 * 110.31056 * 117.68809 * 12 11 10 30 30 H 1.09004 * 109.46765 * 173.54929 * 15 13 12 31 31 H 1.08999 * 109.46911 * 53.54780 * 15 13 12 32 32 H 1.08002 * 120.42196 * 0.04097 * 17 16 15 33 33 H 1.07996 * 119.61854 * 180.25810 * 18 17 16 34 34 H 1.08001 * 119.61693 * 179.97438 * 20 19 18 35 35 H 1.08004 * 120.42054 * 179.97438 * 21 20 19 36 36 H 1.09005 * 110.66599 * 81.84839 * 22 10 9 37 37 H 1.09001 * 110.67275 * 318.71427 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2058 -3.6157 0.0027 11 6 2.9113 -3.7086 1.2993 12 6 3.1619 -5.2035 1.5710 13 6 2.5295 -5.9438 0.3701 14 1 3.2842 -6.1739 -0.3820 15 6 1.8217 -7.2192 0.8320 16 6 2.8413 -8.1988 1.3535 17 6 3.4376 -9.1207 0.5069 18 6 4.3680 -10.0038 1.0211 19 7 4.6900 -9.9758 2.2996 20 6 4.1433 -9.1130 3.1336 21 6 3.2045 -8.2002 2.6916 22 6 1.5061 -4.9142 -0.1716 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.2917 -3.2862 2.0903 27 1 3.8612 -3.1769 1.2440 28 1 2.6773 -5.5056 2.4994 29 1 4.2320 -5.4051 1.6189 30 1 1.2880 -7.6631 -0.0084 31 1 1.1138 -6.9752 1.6241 32 1 3.1785 -9.1482 -0.5412 33 1 4.8402 -10.7222 0.3674 34 1 4.4319 -9.1203 4.1743 35 1 2.7599 -7.4963 3.3796 36 1 1.2952 -5.0993 -1.2249 37 1 0.5882 -4.9387 0.4157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368485486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:03 Heat of formation + Delta-G solvation = 6.824998 kcal Electronic energy + Delta-G solvation = -17190.604437 eV Core-core repulsion = 14545.220523 eV Total energy + Delta-G solvation = -2645.383914 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15816 -39.76673 -36.00048 -34.69170 -32.42486 -32.03977 -30.36727 -28.87010 -26.70908 -24.50726 -24.19530 -22.95289 -21.74229 -20.89176 -18.40191 -17.62082 -17.21291 -16.86765 -16.70197 -16.40274 -15.87454 -15.02553 -14.74879 -14.62288 -14.43524 -14.29391 -13.96018 -13.43073 -13.32356 -13.23104 -12.86590 -12.50159 -12.43868 -12.29071 -11.95398 -11.83677 -11.63250 -11.49065 -11.24708 -10.63181 -10.38947 -10.32387 -10.00552 -9.12249 -8.23303 -6.33873 0.28493 0.36594 1.39324 1.41015 1.52207 2.38651 2.92648 3.09043 3.38836 3.52626 3.67425 3.79655 3.92927 4.04282 4.12495 4.26918 4.30883 4.40516 4.53925 4.58811 4.74453 4.79824 4.83173 4.89729 4.95946 5.01102 5.05047 5.07767 5.17545 5.21394 5.25442 5.41964 5.54816 5.62971 5.87067 6.00648 6.26842 6.53853 6.82077 7.10105 7.36398 8.87957 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.053621 B = 0.004000 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.057197 B = 6998.785358 C = 7198.950772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.200 3.800 10 N -0.530 5.530 11 C 0.047 3.953 12 C -0.113 4.113 13 C -0.068 4.068 14 H 0.084 0.916 15 C -0.068 4.068 16 C -0.036 4.036 17 C -0.173 4.173 18 C 0.087 3.913 19 N -0.520 5.520 20 C 0.087 3.913 21 C -0.174 4.174 22 C 0.035 3.965 23 H 0.265 0.735 24 H 0.003 0.997 25 H -0.035 1.035 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -18.305 3.660 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.073 3.927 10 N -0.254 5.254 11 C -0.081 4.081 12 C -0.151 4.151 13 C -0.087 4.087 14 H 0.102 0.898 15 C -0.105 4.105 16 C -0.045 4.045 17 C -0.193 4.193 18 C -0.069 4.069 19 N -0.229 5.229 20 C -0.070 4.070 21 C -0.193 4.193 22 C -0.093 4.093 23 H 0.074 0.926 24 H 0.021 0.979 25 H -0.017 1.017 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.191 0.809 34 H 0.188 0.812 35 H 0.163 0.837 36 H 0.095 0.905 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.615 -18.672 3.554 20.125 hybrid contribution -1.203 1.735 0.283 2.130 sum 5.413 -16.936 3.837 18.190 Atomic orbital electron populations 1.70075 1.07703 1.27987 1.51686 1.25926 0.95786 1.03238 0.94676 0.85374 0.78508 0.78156 0.78538 1.19737 1.20516 1.18976 1.21448 0.93509 0.91288 1.50255 0.92335 1.19528 0.90220 0.89439 0.93463 1.64708 1.26710 1.02751 1.31265 1.22666 0.98279 0.97126 0.90074 1.22473 1.01495 0.92554 0.98578 1.21926 0.96794 0.92854 0.97164 0.89795 1.20619 0.95477 0.92387 1.02035 1.20413 0.95596 0.94665 0.93779 1.22317 0.98456 0.96515 1.02003 1.23138 0.94542 0.97525 0.91743 1.67684 1.26368 1.23676 1.05214 1.23085 0.92807 0.90718 1.00343 1.22285 0.99789 1.00784 0.96463 1.23307 0.95683 0.89449 1.00868 0.92587 0.97914 1.01697 0.96111 0.92308 0.90294 0.90739 0.88803 0.90174 0.82957 0.80876 0.81165 0.83736 0.90473 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.53 -30.67 8.82 25.60 0.23 -30.45 16 8 H 0.06 3.37 7.78 -2.91 -0.02 3.35 16 9 C 0.20 10.94 4.52 85.56 0.39 11.33 16 10 N -0.53 -23.38 5.26 -887.55 -4.66 -28.05 16 11 C 0.05 1.82 6.15 86.45 0.53 2.35 16 12 C -0.11 -3.12 5.65 31.47 0.18 -2.95 16 13 C -0.07 -1.75 3.08 -9.58 -0.03 -1.78 16 14 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 15 C -0.07 -1.31 4.81 29.85 0.14 -1.17 16 16 C -0.04 -0.69 4.91 -19.67 -0.10 -0.78 16 17 C -0.17 -3.01 9.82 22.36 0.22 -2.79 16 18 C 0.09 1.59 11.18 84.68 0.95 2.54 16 19 N -0.52 -11.38 10.36 -195.85 -2.03 -13.41 16 20 C 0.09 1.66 11.18 84.68 0.95 2.60 16 21 C -0.17 -3.20 9.00 22.36 0.20 -3.00 16 22 C 0.03 1.19 5.98 86.65 0.52 1.71 16 23 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 24 H 0.00 0.16 8.11 -2.39 -0.02 0.14 16 25 H -0.03 -2.03 7.81 -2.39 -0.02 -2.05 16 26 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.08 1.90 6.81 -2.39 -0.02 1.89 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.09 1.56 8.10 -2.38 -0.02 1.54 16 31 H 0.08 1.54 8.04 -2.39 -0.02 1.52 16 32 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.14 2.26 7.35 -2.91 -0.02 2.24 16 36 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.03 1.16 7.93 -2.39 -0.02 1.14 16 Total: -1.00 -68.26 304.89 1.28 -66.98 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.03 Total: 5.97 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 4.63 Total: -21.81 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -6.41 Total: -97.97 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.26 1.28 -66.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368485486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.806 kcal (2) G-P(sol) polarization free energy of solvation -68.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds