Wall clock time and date at job start Mon Mar 30 2020 04:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47965 * 110.99982 * 2 1 4 4 C 1.53940 * 86.18035 * 222.41846 * 3 2 1 5 5 N 1.46895 * 113.73577 * 138.07609 * 4 3 2 6 6 C 1.46903 * 110.99715 * 154.99878 * 5 4 3 7 7 H 1.08998 * 109.47492 * 35.00719 * 6 5 4 8 8 C 1.50697 * 109.47491 * 274.99919 * 6 5 4 9 9 H 1.08001 * 120.00346 * 324.77368 * 8 6 5 10 10 C 1.37872 * 120.00025 * 144.76529 * 8 6 5 11 11 N 1.31516 * 120.00002 * 5.12399 * 10 8 6 12 12 Si 1.86803 * 120.00315 * 185.11632 * 10 8 6 13 13 H 1.48502 * 109.46973 * 0.02562 * 12 10 8 14 14 H 1.48492 * 109.47292 * 120.00244 * 12 10 8 15 15 H 1.48497 * 109.47438 * 240.00598 * 12 10 8 16 16 C 1.50707 * 109.46710 * 155.00403 * 6 5 4 17 17 C 1.38230 * 120.00276 * 45.41396 * 16 6 5 18 18 C 1.38228 * 120.00096 * 179.78805 * 17 16 6 19 19 C 1.38239 * 119.99888 * 0.43989 * 18 17 16 20 20 C 1.38231 * 119.99883 * 359.81243 * 19 18 17 21 21 C 1.38231 * 120.00018 * 359.97438 * 20 19 18 22 22 C 1.47958 * 110.99891 * 260.64103 * 2 1 3 23 23 H 1.09002 * 109.47195 * 60.00065 * 1 2 3 24 24 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46796 * 300.00536 * 1 2 3 26 26 H 1.08999 * 113.75827 * 108.10298 * 3 2 1 27 27 H 1.09005 * 113.76036 * 336.73112 * 3 2 1 28 28 H 1.08996 * 113.73201 * 269.25770 * 4 3 2 29 29 H 1.00895 * 111.00515 * 278.95679 * 5 4 3 30 30 H 0.97001 * 119.99832 * 179.97438 * 11 10 8 31 31 H 1.08008 * 119.99625 * 359.97438 * 17 16 6 32 32 H 1.08003 * 120.00406 * 180.27550 * 18 17 16 33 33 H 1.08000 * 119.99976 * 179.83472 * 19 18 17 34 34 H 1.07998 * 119.99744 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.99764 * 180.02562 * 21 20 19 36 36 H 1.08999 * 113.76408 * 23.26602 * 22 2 1 37 37 H 1.09007 * 113.75623 * 251.89900 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 -1.0361 5 7 3.2515 1.8179 -2.1423 6 6 4.5775 1.6119 -2.7400 7 1 4.8248 0.5505 -2.7185 8 6 5.6074 2.3837 -1.9561 9 1 5.3522 3.3402 -1.5243 10 6 6.8755 1.8688 -1.7899 11 7 7.2176 0.7542 -2.3984 12 14 8.1080 2.7543 -0.7006 13 1 7.4806 3.9757 -0.1350 14 1 8.5265 1.8559 0.4051 15 1 9.2962 3.1352 -1.5057 16 6 4.5659 2.0961 -4.1671 17 6 3.9921 3.3144 -4.4790 18 6 3.9854 3.7605 -5.7873 19 6 4.5444 2.9841 -6.7851 20 6 5.1135 1.7634 -6.4740 21 6 5.1242 1.3194 -5.1650 22 6 1.9992 -0.2246 -1.3629 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3010 2.1198 -0.3941 28 1 3.9458 0.5068 -0.5954 29 1 2.5252 1.7417 -2.8385 30 1 8.1099 0.3921 -2.2818 31 1 3.5517 3.9191 -3.6999 32 1 3.5411 4.7144 -6.0304 33 1 4.5368 3.3314 -7.8077 34 1 5.5506 1.1571 -7.2535 35 1 5.5692 0.3658 -4.9219 36 1 1.3010 0.0441 -2.1557 37 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379142113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:15 Heat of formation + Delta-G solvation = 63.144465 kcal Electronic energy + Delta-G solvation = -17762.565155 eV Core-core repulsion = 15119.623436 eV Total energy + Delta-G solvation = -2642.941719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.51461 -38.31236 -34.79736 -32.21820 -30.53564 -30.00257 -28.43050 -26.10194 -25.66597 -23.30684 -22.13226 -21.49417 -19.96571 -19.26664 -16.52909 -15.98236 -15.51976 -15.32591 -14.60571 -14.49992 -14.28750 -13.97915 -13.26962 -12.81716 -12.58631 -12.42355 -12.30256 -12.11904 -11.78591 -11.61822 -11.26480 -10.97715 -10.86862 -10.56835 -10.37544 -10.21653 -9.88029 -9.70208 -9.55944 -8.63496 -8.52081 -8.05663 -7.71255 -7.35139 -6.08722 -4.11883 2.27837 2.30071 3.27870 3.36212 3.41251 4.27913 4.38320 4.68510 5.02044 5.11139 5.23184 5.34805 5.49964 5.63886 5.65010 5.74254 5.81410 5.85671 5.88064 5.92408 6.08966 6.24568 6.25951 6.43121 6.50503 6.57195 6.70289 6.87589 6.94310 7.22424 7.30486 7.33674 7.36763 7.68731 7.83284 7.88680 8.12129 8.13250 8.62862 9.00425 9.51970 10.96293 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013951 B = 0.009225 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.538603 B = 3034.554491 C = 4458.546781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.487 5.487 3 C 0.007 3.993 4 C 0.087 3.913 5 N -0.674 5.674 6 C 0.235 3.765 7 H 0.043 0.957 8 C -0.485 4.485 9 H 0.064 0.936 10 C 0.062 3.938 11 N -0.887 5.887 12 Si 0.895 3.105 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.037 4.037 17 C -0.112 4.112 18 C -0.134 4.134 19 C -0.152 4.152 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.032 4.032 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.316 0.684 30 H 0.262 0.738 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.064 0.936 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 0.148 -2.036 9.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.210 5.210 3 C -0.122 4.122 4 C -0.025 4.025 5 N -0.303 5.303 6 C 0.129 3.871 7 H 0.061 0.939 8 C -0.524 4.524 9 H 0.082 0.918 10 C -0.141 4.141 11 N -0.525 5.525 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.039 4.039 17 C -0.131 4.131 18 C -0.152 4.152 19 C -0.171 4.171 20 C -0.149 4.149 21 C -0.128 4.128 22 C -0.163 4.163 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.391 0.088 -1.106 8.464 hybrid contribution 0.349 0.177 -0.652 0.760 sum -8.042 0.265 -1.758 8.236 Atomic orbital electron populations 1.22806 0.90558 1.01637 1.00619 1.68385 1.08124 1.19912 1.24537 1.24156 0.97351 0.90125 1.00607 1.23234 0.96995 0.89314 0.92988 1.60712 1.05148 1.52244 1.12170 1.18461 0.85426 0.97186 0.86066 0.93874 1.21033 0.94571 1.05496 1.31271 0.91772 1.25026 0.98481 0.94991 0.95611 1.69929 1.20053 1.20362 1.42131 0.86482 0.81011 0.79865 0.80375 1.19557 1.20960 1.21143 1.20702 0.92967 0.93582 0.96619 1.20988 1.00277 0.96429 0.95368 1.20990 1.01381 0.99130 0.93746 1.20824 1.02118 0.95871 0.98241 1.20990 1.00821 0.96554 0.96545 1.21105 0.99294 1.00492 0.91944 1.24839 0.98603 1.02195 0.90669 0.95082 0.91801 0.91806 0.89697 0.91458 0.87233 0.86648 0.92856 0.86301 0.87621 0.87786 0.87599 0.86313 0.91794 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.06 0.58 0.50 16 2 N -0.49 -7.60 6.56 -246.72 -1.62 -9.22 16 3 C 0.01 0.11 7.79 -2.76 -0.02 0.09 16 4 C 0.09 1.61 4.10 -69.39 -0.28 1.32 16 5 N -0.67 -13.35 5.95 -103.40 -0.62 -13.97 16 6 C 0.24 5.47 2.14 -70.01 -0.15 5.32 16 7 H 0.04 1.12 6.87 -51.93 -0.36 0.76 16 8 C -0.49 -12.70 8.38 -34.44 -0.29 -12.99 16 9 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 10 C 0.06 1.65 5.45 -17.82 -0.10 1.55 16 11 N -0.89 -24.33 12.84 55.43 0.71 -23.62 16 12 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C -0.04 -0.82 4.65 -104.62 -0.49 -1.31 16 17 C -0.11 -2.26 9.07 -39.59 -0.36 -2.61 16 18 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 19 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 20 C -0.13 -2.44 10.05 -39.59 -0.40 -2.84 16 21 C -0.11 -2.34 9.67 -39.59 -0.38 -2.72 16 22 C -0.03 -0.52 7.59 -2.77 -0.02 -0.54 16 23 H 0.03 0.37 7.62 -51.93 -0.40 -0.02 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 28 H 0.11 2.37 7.81 -51.93 -0.41 1.96 16 29 H 0.32 5.78 7.59 -39.29 -0.30 5.48 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.12 2.35 7.89 -52.48 -0.41 1.94 16 32 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 33 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.12 2.65 8.00 -52.48 -0.42 2.23 16 36 H 0.06 0.95 7.29 -51.93 -0.38 0.57 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -27.06 308.70 -10.18 -37.24 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.59 Total: 8.93 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.70 Total: -20.07 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -1.52 Total: -46.81 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.06 -10.18 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379142113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.384 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds