Wall clock time and date at job start Mon Mar 30 2020 04:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47965 * 110.99982 * 2 1 4 4 C 1.53940 * 86.18035 * 222.41846 * 3 2 1 5 5 N 1.46895 * 113.73577 * 138.07609 * 4 3 2 6 6 C 1.46903 * 110.99715 * 154.99878 * 5 4 3 7 7 H 1.08998 * 109.47492 * 35.00719 * 6 5 4 8 8 C 1.50697 * 109.47491 * 274.99919 * 6 5 4 9 9 H 1.08001 * 120.00346 * 324.77368 * 8 6 5 10 10 C 1.37872 * 120.00025 * 144.76529 * 8 6 5 11 11 N 1.31516 * 120.00002 * 5.12399 * 10 8 6 12 12 Si 1.86803 * 120.00315 * 185.11632 * 10 8 6 13 13 H 1.48502 * 109.46973 * 0.02562 * 12 10 8 14 14 H 1.48492 * 109.47292 * 120.00244 * 12 10 8 15 15 H 1.48497 * 109.47438 * 240.00598 * 12 10 8 16 16 C 1.50707 * 109.46710 * 155.00403 * 6 5 4 17 17 C 1.38230 * 120.00276 * 45.41396 * 16 6 5 18 18 C 1.38228 * 120.00096 * 179.78805 * 17 16 6 19 19 C 1.38239 * 119.99888 * 0.43989 * 18 17 16 20 20 C 1.38231 * 119.99883 * 359.81243 * 19 18 17 21 21 C 1.38231 * 120.00018 * 359.97438 * 20 19 18 22 22 C 1.47958 * 110.99891 * 260.64103 * 2 1 3 23 23 H 1.09002 * 109.47195 * 60.00065 * 1 2 3 24 24 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46796 * 300.00536 * 1 2 3 26 26 H 1.08999 * 113.75827 * 108.10298 * 3 2 1 27 27 H 1.09005 * 113.76036 * 336.73112 * 3 2 1 28 28 H 1.08996 * 113.73201 * 269.25770 * 4 3 2 29 29 H 1.00895 * 111.00515 * 278.95679 * 5 4 3 30 30 H 0.97001 * 119.99832 * 179.97438 * 11 10 8 31 31 H 1.08008 * 119.99625 * 359.97438 * 17 16 6 32 32 H 1.08003 * 120.00406 * 180.27550 * 18 17 16 33 33 H 1.08000 * 119.99976 * 179.83472 * 19 18 17 34 34 H 1.07998 * 119.99744 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.99764 * 180.02562 * 21 20 19 36 36 H 1.08999 * 113.76408 * 23.26602 * 22 2 1 37 37 H 1.09007 * 113.75623 * 251.89900 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 -1.0361 5 7 3.2515 1.8179 -2.1423 6 6 4.5775 1.6119 -2.7400 7 1 4.8248 0.5505 -2.7185 8 6 5.6074 2.3837 -1.9561 9 1 5.3522 3.3402 -1.5243 10 6 6.8755 1.8688 -1.7899 11 7 7.2176 0.7542 -2.3984 12 14 8.1080 2.7543 -0.7006 13 1 7.4806 3.9757 -0.1350 14 1 8.5265 1.8559 0.4051 15 1 9.2962 3.1352 -1.5057 16 6 4.5659 2.0961 -4.1671 17 6 3.9921 3.3144 -4.4790 18 6 3.9854 3.7605 -5.7873 19 6 4.5444 2.9841 -6.7851 20 6 5.1135 1.7634 -6.4740 21 6 5.1242 1.3194 -5.1650 22 6 1.9992 -0.2246 -1.3629 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3010 2.1198 -0.3941 28 1 3.9458 0.5068 -0.5954 29 1 2.5252 1.7417 -2.8385 30 1 8.1099 0.3921 -2.2818 31 1 3.5517 3.9191 -3.6999 32 1 3.5411 4.7144 -6.0304 33 1 4.5368 3.3314 -7.8077 34 1 5.5506 1.1571 -7.2535 35 1 5.5692 0.3658 -4.9219 36 1 1.3010 0.0441 -2.1557 37 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379142113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:14 Heat of formation + Delta-G solvation = 44.975277 kcal Electronic energy + Delta-G solvation = -17763.353030 eV Core-core repulsion = 15119.623436 eV Total energy + Delta-G solvation = -2643.729594 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89229 -39.82642 -36.45833 -34.10938 -32.01892 -31.50898 -29.78353 -27.95654 -26.99028 -24.89601 -23.59103 -22.97044 -21.63938 -20.68259 -18.44752 -17.53135 -17.06275 -16.68822 -16.36138 -15.83861 -15.73519 -15.49555 -14.79209 -14.48557 -14.07385 -13.80862 -13.78947 -13.57759 -13.38590 -13.04253 -12.88622 -12.63418 -12.51999 -12.05032 -12.00770 -11.79239 -11.48962 -11.41302 -11.32566 -10.56594 -9.82537 -9.56847 -9.29273 -9.02854 -8.09560 -6.19999 0.75369 0.78474 1.38255 1.41095 1.51946 2.41531 2.98472 3.09338 3.27768 3.56309 3.77187 4.13104 4.24618 4.29607 4.33087 4.43500 4.45253 4.50556 4.60135 4.63384 4.75447 4.89291 4.94269 4.96076 4.98501 5.18686 5.24459 5.36483 5.40429 5.48210 5.74060 5.81356 5.83333 6.09872 6.12519 6.19257 6.36448 6.46686 6.92990 7.00363 7.46677 8.92839 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013951 B = 0.009225 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.538603 B = 3034.554491 C = 4458.546781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.498 5.498 3 C 0.020 3.980 4 C 0.073 3.927 5 N -0.668 5.668 6 C 0.247 3.753 7 H 0.004 0.996 8 C -0.493 4.493 9 H 0.051 0.949 10 C 0.015 3.985 11 N -0.915 5.915 12 Si 0.949 3.051 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.284 1.284 16 C -0.062 4.062 17 C -0.122 4.122 18 C -0.128 4.128 19 C -0.143 4.143 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.019 4.019 23 H 0.040 0.960 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.326 0.674 30 H 0.260 0.740 31 H 0.117 0.883 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.421 1.587 -3.202 11.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.221 5.221 3 C -0.109 4.109 4 C -0.039 4.039 5 N -0.298 5.298 6 C 0.139 3.861 7 H 0.022 0.978 8 C -0.532 4.532 9 H 0.069 0.931 10 C -0.184 4.184 11 N -0.554 5.554 12 Si 0.775 3.225 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.210 1.210 16 C -0.063 4.063 17 C -0.140 4.140 18 C -0.146 4.146 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.150 4.150 23 H 0.059 0.941 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.912 1.528 -2.263 10.281 hybrid contribution 0.734 -0.274 -0.350 0.858 sum -9.179 1.254 -2.612 9.625 Atomic orbital electron populations 1.22879 0.88235 1.02793 1.01735 1.68358 1.10507 1.19282 1.23948 1.24051 0.96512 0.90909 0.99453 1.23185 0.96454 0.90824 0.93433 1.60616 1.04043 1.52751 1.12343 1.18110 0.86326 0.94398 0.87267 0.97801 1.21213 0.95454 1.04998 1.31530 0.93087 1.25680 1.00120 0.95770 0.96871 1.70048 1.20204 1.21616 1.43504 0.85637 0.79004 0.78921 0.78896 1.19203 1.20711 1.21014 1.20595 0.94958 0.94959 0.95832 1.21037 1.00554 0.95619 0.96810 1.21385 1.00274 1.00347 0.92552 1.21285 0.99976 0.94663 1.00120 1.21283 1.00421 0.97547 0.95677 1.21062 1.00528 1.00048 0.93618 1.24709 0.97828 1.00732 0.91708 0.94129 0.90682 0.90473 0.89958 0.89996 0.91323 0.85547 0.93100 0.86447 0.84057 0.83742 0.85128 0.88840 0.90057 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.17 9.65 127.69 1.23 1.06 16 2 N -0.50 -15.06 6.56 -934.48 -6.13 -21.18 16 3 C 0.02 0.64 7.79 86.41 0.67 1.31 16 4 C 0.07 2.79 4.10 46.48 0.19 2.98 16 5 N -0.67 -27.16 5.95 -481.04 -2.86 -30.03 16 6 C 0.25 12.00 2.14 43.42 0.09 12.10 16 7 H 0.00 0.23 6.87 -2.39 -0.02 0.21 16 8 C -0.49 -26.81 8.38 25.60 0.21 -26.60 16 9 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 10 C 0.02 0.84 5.45 84.65 0.46 1.30 16 11 N -0.91 -52.50 12.84 21.45 0.28 -52.22 16 12 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 16 C -0.06 -2.79 4.65 -19.86 -0.09 -2.88 16 17 C -0.12 -4.77 9.07 22.27 0.20 -4.57 16 18 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 19 C -0.14 -4.42 10.05 22.27 0.22 -4.19 16 20 C -0.13 -4.65 10.05 22.27 0.22 -4.43 16 21 C -0.13 -5.83 9.67 22.27 0.22 -5.61 16 22 C -0.02 -0.61 7.59 86.41 0.66 0.05 16 23 H 0.04 0.86 7.62 -2.39 -0.02 0.84 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.08 2.37 7.92 -2.38 -0.02 2.35 16 28 H 0.07 3.19 7.81 -2.39 -0.02 3.17 16 29 H 0.33 11.98 7.59 -89.70 -0.68 11.30 16 30 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.12 4.55 7.89 -2.91 -0.02 4.53 16 32 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.09 4.45 8.00 -2.91 -0.02 4.42 16 36 H 0.08 2.31 7.29 -2.39 -0.02 2.29 16 37 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -60.39 308.70 -1.81 -62.20 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.36 Total: 28.26 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 4.52 Total: -33.40 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -8.72 Total: -103.43 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -60.39 -1.81 -62.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379142113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.174 kcal (2) G-P(sol) polarization free energy of solvation -60.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds