Wall clock time and date at job start Mon Mar 30 2020 04:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47961 * 111.00418 * 2 1 4 4 C 1.53933 * 86.18282 * 222.41872 * 3 2 1 5 5 N 1.46890 * 113.73576 * 138.08039 * 4 3 2 6 6 C 1.46900 * 111.00416 * 154.99802 * 5 4 3 7 7 H 1.09004 * 109.46702 * 324.99876 * 6 5 4 8 8 C 1.50701 * 109.46963 * 84.99709 * 6 5 4 9 9 H 1.07999 * 119.99726 * 55.29460 * 8 6 5 10 10 C 1.37885 * 119.99793 * 235.29154 * 8 6 5 11 11 N 1.31510 * 119.99535 * 173.90604 * 10 8 6 12 12 Si 1.86797 * 119.99814 * 353.90360 * 10 8 6 13 13 H 1.48504 * 109.46979 * 85.77531 * 12 10 8 14 14 H 1.48502 * 109.46993 * 205.76880 * 12 10 8 15 15 H 1.48490 * 109.47677 * 325.77400 * 12 10 8 16 16 C 1.50696 * 109.47246 * 205.00029 * 6 5 4 17 17 C 1.38238 * 120.00349 * 313.71341 * 16 6 5 18 18 C 1.38230 * 120.00262 * 179.81440 * 17 16 6 19 19 C 1.38233 * 119.99976 * 0.39606 * 18 17 16 20 20 C 1.38235 * 120.00165 * 359.85650 * 19 18 17 21 21 C 1.38237 * 119.99946 * 133.98805 * 16 6 5 22 22 C 1.47964 * 111.00221 * 260.63948 * 2 1 3 23 23 H 1.09000 * 109.46713 * 59.99789 * 1 2 3 24 24 H 1.08993 * 109.47664 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46849 * 300.00332 * 1 2 3 26 26 H 1.09000 * 113.76111 * 108.09210 * 3 2 1 27 27 H 1.09004 * 113.75571 * 336.73682 * 3 2 1 28 28 H 1.09005 * 113.72478 * 269.25573 * 4 3 2 29 29 H 1.00899 * 111.00246 * 31.04393 * 5 4 3 30 30 H 0.97008 * 119.99578 * 179.97438 * 11 10 8 31 31 H 1.08006 * 119.99514 * 0.02562 * 17 16 6 32 32 H 1.08000 * 120.00214 * 180.23282 * 18 17 16 33 33 H 1.08001 * 120.00021 * 179.83827 * 19 18 17 34 34 H 1.07995 * 120.00377 * 179.97438 * 20 19 18 35 35 H 1.07999 * 120.00085 * 359.97438 * 21 16 6 36 36 H 1.09005 * 113.75469 * 23.26359 * 22 2 1 37 37 H 1.08998 * 113.75609 * 251.90344 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 7 3.2517 1.8179 -2.1421 6 6 4.5776 1.6119 -2.7399 7 1 5.2867 1.3282 -1.9621 8 6 4.4987 0.5163 -3.7716 9 1 3.7878 0.5874 -4.5815 10 6 5.3343 -0.5769 -3.6816 11 7 5.1856 -1.5879 -4.5094 12 14 6.6772 -0.6216 -2.3840 13 1 6.1183 -1.1434 -1.1110 14 1 7.7779 -1.5074 -2.8412 15 1 7.2030 0.7502 -2.1682 16 6 5.0364 2.8883 -3.3966 17 6 4.1715 3.5973 -4.2090 18 6 4.5911 4.7702 -4.8083 19 6 5.8783 5.2298 -4.6017 20 6 6.7450 4.5181 -3.7935 21 6 6.3241 3.3472 -3.1910 22 6 1.9993 -0.2247 -1.3629 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4460 1.6803 0.9483 27 1 1.3011 2.1198 -0.3940 28 1 3.9459 0.5067 -0.5952 29 1 3.1374 2.7725 -1.8360 30 1 5.7737 -2.3569 -4.4463 31 1 3.1667 3.2366 -4.3728 32 1 3.9142 5.3261 -5.4401 33 1 6.2070 6.1447 -5.0720 34 1 7.7508 4.8769 -3.6324 35 1 7.0012 2.7912 -2.5595 36 1 1.3010 0.0440 -2.1556 37 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379142114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:16 Heat of formation + Delta-G solvation = 67.859363 kcal Electronic energy + Delta-G solvation = -17882.416614 eV Core-core repulsion = 15239.679349 eV Total energy + Delta-G solvation = -2642.737266 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.47793 -38.54528 -34.97444 -32.22773 -30.80837 -30.24311 -28.53024 -26.58266 -25.56183 -23.22655 -22.21182 -21.71655 -19.83438 -19.19185 -17.00315 -16.29241 -15.65108 -15.29561 -14.83296 -14.56364 -14.20423 -14.08853 -13.28214 -13.03546 -12.85166 -12.80101 -12.31946 -12.18696 -12.01417 -11.59666 -11.26313 -11.00405 -10.95313 -10.65924 -10.44495 -10.10112 -10.03536 -9.80974 -9.52343 -8.67971 -8.50383 -8.28388 -7.93721 -7.45482 -6.15783 -4.12410 2.03443 2.07430 3.21206 3.26903 3.30738 4.31895 4.32651 4.46242 4.89868 5.02654 5.20676 5.39725 5.47836 5.48927 5.54936 5.65749 5.71094 5.81675 5.90831 5.97697 5.99710 6.01584 6.21608 6.23869 6.42585 6.51961 6.59556 6.67121 6.68401 6.76767 7.08427 7.12280 7.39614 7.41743 7.48045 7.70428 7.92679 8.22965 8.59630 8.96801 9.46801 10.96755 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.009105 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.074055 B = 3074.501377 C = 4102.103005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.493 5.493 3 C -0.008 4.008 4 C 0.074 3.926 5 N -0.666 5.666 6 C 0.215 3.785 7 H 0.019 0.981 8 C -0.478 4.478 9 H 0.080 0.920 10 C 0.075 3.925 11 N -0.889 5.889 12 Si 0.865 3.135 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.265 1.265 16 C -0.045 4.045 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.125 4.125 21 C -0.132 4.132 22 C 0.027 3.973 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.316 0.684 30 H 0.265 0.735 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 9.015 5.888 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.216 5.216 3 C -0.138 4.138 4 C -0.037 4.037 5 N -0.297 5.297 6 C 0.108 3.892 7 H 0.036 0.964 8 C -0.516 4.516 9 H 0.098 0.902 10 C -0.128 4.128 11 N -0.526 5.526 12 Si 0.693 3.307 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.190 1.190 16 C -0.047 4.047 17 C -0.120 4.120 18 C -0.145 4.145 19 C -0.165 4.165 20 C -0.143 4.143 21 C -0.151 4.151 22 C -0.102 4.102 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.134 0.866 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.308 7.963 5.902 10.449 hybrid contribution 1.092 0.650 0.554 1.387 sum -2.216 8.613 6.456 10.990 Atomic orbital electron populations 1.22792 0.90354 1.01903 1.00478 1.68428 1.08451 1.17934 1.26820 1.24286 0.97920 0.91990 0.99592 1.23190 0.96492 0.94302 0.89680 1.61157 1.33464 1.05610 1.29511 1.18799 0.85573 0.91056 0.93814 0.96379 1.20762 1.19878 1.00859 1.10135 0.90150 1.25044 0.96994 0.95189 0.95559 1.69884 1.38278 1.06750 1.37674 0.87078 0.82805 0.78238 0.82566 1.19982 1.21342 1.19028 1.20589 0.93366 0.94389 0.96324 1.20996 1.00353 0.94111 0.96530 1.21071 0.95990 0.97180 1.00290 1.20887 0.94556 1.00231 1.00842 1.20955 0.98892 0.95921 0.98505 1.21104 0.96402 0.96305 1.01294 1.24022 0.96840 1.00496 0.88831 0.94721 0.91577 0.92164 0.90322 0.91046 0.91206 0.86561 0.92496 0.85734 0.87118 0.87339 0.87250 0.86991 0.90409 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 16 2 N -0.49 -8.11 6.56 -246.74 -1.62 -9.73 16 3 C -0.01 -0.13 7.56 -2.77 -0.02 -0.15 16 4 C 0.07 1.39 4.20 -69.41 -0.29 1.10 16 5 N -0.67 -12.96 5.92 -103.41 -0.61 -13.57 16 6 C 0.21 4.78 2.13 -70.02 -0.15 4.63 16 7 H 0.02 0.43 3.96 -51.93 -0.21 0.22 16 8 C -0.48 -12.74 8.96 -34.44 -0.31 -13.05 16 9 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 10 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 11 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 12 Si 0.87 20.85 26.94 -169.99 -4.58 16.27 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.05 5.63 56.52 0.32 -5.73 16 16 C -0.05 -0.94 4.64 -104.62 -0.49 -1.42 16 17 C -0.10 -1.92 9.08 -39.58 -0.36 -2.28 16 18 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 19 C -0.15 -2.32 10.05 -39.58 -0.40 -2.72 16 20 C -0.12 -2.10 10.05 -39.58 -0.40 -2.49 16 21 C -0.13 -2.58 9.67 -39.58 -0.38 -2.96 16 22 C 0.03 0.51 7.77 -2.77 -0.02 0.49 16 23 H 0.03 0.46 7.62 -51.93 -0.40 0.06 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.01 7.92 -51.93 -0.41 0.59 16 28 H 0.07 1.43 7.48 -51.93 -0.39 1.05 16 29 H 0.32 5.48 7.97 -39.29 -0.31 5.17 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.12 2.36 7.91 -52.48 -0.42 1.95 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.11 2.19 6.82 -52.49 -0.36 1.83 16 36 H 0.08 1.48 7.62 -51.93 -0.40 1.08 16 37 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 302.89 15.07 4.56 4.56 Total: -1.00 -28.61 302.89 -9.69 -38.30 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.48 Total: 8.51 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.73 Total: -18.87 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -1.46 Total: -48.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.58 Total: 16.27 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.61 -9.69 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379142114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.158 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds