Wall clock time and date at job start Mon Mar 30 2020 04:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47961 * 111.00418 * 2 1 4 4 C 1.53933 * 86.18282 * 222.41872 * 3 2 1 5 5 N 1.46890 * 113.73576 * 138.08039 * 4 3 2 6 6 C 1.46900 * 111.00416 * 154.99802 * 5 4 3 7 7 H 1.09004 * 109.46702 * 324.99876 * 6 5 4 8 8 C 1.50701 * 109.46963 * 84.99709 * 6 5 4 9 9 H 1.07999 * 119.99726 * 55.29460 * 8 6 5 10 10 C 1.37885 * 119.99793 * 235.29154 * 8 6 5 11 11 N 1.31510 * 119.99535 * 173.90604 * 10 8 6 12 12 Si 1.86797 * 119.99814 * 353.90360 * 10 8 6 13 13 H 1.48504 * 109.46979 * 85.77531 * 12 10 8 14 14 H 1.48502 * 109.46993 * 205.76880 * 12 10 8 15 15 H 1.48490 * 109.47677 * 325.77400 * 12 10 8 16 16 C 1.50696 * 109.47246 * 205.00029 * 6 5 4 17 17 C 1.38238 * 120.00349 * 313.71341 * 16 6 5 18 18 C 1.38230 * 120.00262 * 179.81440 * 17 16 6 19 19 C 1.38233 * 119.99976 * 0.39606 * 18 17 16 20 20 C 1.38235 * 120.00165 * 359.85650 * 19 18 17 21 21 C 1.38237 * 119.99946 * 133.98805 * 16 6 5 22 22 C 1.47964 * 111.00221 * 260.63948 * 2 1 3 23 23 H 1.09000 * 109.46713 * 59.99789 * 1 2 3 24 24 H 1.08993 * 109.47664 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46849 * 300.00332 * 1 2 3 26 26 H 1.09000 * 113.76111 * 108.09210 * 3 2 1 27 27 H 1.09004 * 113.75571 * 336.73682 * 3 2 1 28 28 H 1.09005 * 113.72478 * 269.25573 * 4 3 2 29 29 H 1.00899 * 111.00246 * 31.04393 * 5 4 3 30 30 H 0.97008 * 119.99578 * 179.97438 * 11 10 8 31 31 H 1.08006 * 119.99514 * 0.02562 * 17 16 6 32 32 H 1.08000 * 120.00214 * 180.23282 * 18 17 16 33 33 H 1.08001 * 120.00021 * 179.83827 * 19 18 17 34 34 H 1.07995 * 120.00377 * 179.97438 * 20 19 18 35 35 H 1.07999 * 120.00085 * 359.97438 * 21 16 6 36 36 H 1.09005 * 113.75469 * 23.26359 * 22 2 1 37 37 H 1.08998 * 113.75609 * 251.90344 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 7 3.2517 1.8179 -2.1421 6 6 4.5776 1.6119 -2.7399 7 1 5.2867 1.3282 -1.9621 8 6 4.4987 0.5163 -3.7716 9 1 3.7878 0.5874 -4.5815 10 6 5.3343 -0.5769 -3.6816 11 7 5.1856 -1.5879 -4.5094 12 14 6.6772 -0.6216 -2.3840 13 1 6.1183 -1.1434 -1.1110 14 1 7.7779 -1.5074 -2.8412 15 1 7.2030 0.7502 -2.1682 16 6 5.0364 2.8883 -3.3966 17 6 4.1715 3.5973 -4.2090 18 6 4.5911 4.7702 -4.8083 19 6 5.8783 5.2298 -4.6017 20 6 6.7450 4.5181 -3.7935 21 6 6.3241 3.3472 -3.1910 22 6 1.9993 -0.2247 -1.3629 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4460 1.6803 0.9483 27 1 1.3011 2.1198 -0.3940 28 1 3.9459 0.5067 -0.5952 29 1 3.1374 2.7725 -1.8360 30 1 5.7737 -2.3569 -4.4463 31 1 3.1667 3.2366 -4.3728 32 1 3.9142 5.3261 -5.4401 33 1 6.2070 6.1447 -5.0720 34 1 7.7508 4.8769 -3.6324 35 1 7.0012 2.7912 -2.5595 36 1 1.3010 0.0440 -2.1556 37 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379142114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:16 Heat of formation + Delta-G solvation = 47.008701 kcal Electronic energy + Delta-G solvation = -17883.320767 eV Core-core repulsion = 15239.679349 eV Total energy + Delta-G solvation = -2643.641418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89307 -39.94949 -36.59464 -34.23903 -32.24584 -31.61486 -29.88292 -28.40934 -26.96081 -24.78317 -23.65185 -23.09430 -21.46658 -20.64203 -19.02869 -17.71586 -17.14358 -16.66089 -16.34907 -16.25647 -15.72020 -15.45287 -14.83786 -14.66076 -14.41949 -14.19776 -13.77910 -13.61066 -13.55694 -13.03574 -12.82237 -12.72034 -12.36443 -12.24025 -11.92114 -11.77094 -11.59226 -11.48602 -11.37088 -10.71192 -9.84182 -9.66017 -9.39084 -9.10505 -8.29533 -6.29142 0.64163 0.68549 1.27694 1.28476 1.36593 2.29110 2.89789 3.04491 3.17217 3.45711 3.69397 4.13224 4.17073 4.19314 4.26055 4.33961 4.43886 4.44728 4.56320 4.61247 4.66146 4.69940 4.86128 4.90837 4.96142 4.98418 5.10064 5.25209 5.34285 5.36343 5.53118 5.72417 5.75599 5.94151 6.11063 6.12792 6.29712 6.48567 6.71736 6.91269 7.34147 8.87183 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.009105 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.074055 B = 3074.501377 C = 4102.103005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.501 5.501 3 C 0.012 3.988 4 C 0.063 3.937 5 N -0.665 5.665 6 C 0.223 3.777 7 H 0.011 0.989 8 C -0.470 4.470 9 H 0.034 0.966 10 C 0.021 3.979 11 N -0.941 5.941 12 Si 0.921 3.079 13 H -0.271 1.271 14 H -0.289 1.289 15 H -0.244 1.244 16 C -0.074 4.074 17 C -0.115 4.115 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.123 4.123 21 C -0.151 4.151 22 C 0.025 3.975 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.333 0.667 30 H 0.264 0.736 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 12.124 7.116 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.224 5.224 3 C -0.117 4.117 4 C -0.048 4.048 5 N -0.297 5.297 6 C 0.115 3.885 7 H 0.028 0.972 8 C -0.509 4.509 9 H 0.052 0.948 10 C -0.178 4.178 11 N -0.582 5.582 12 Si 0.747 3.253 13 H -0.197 1.197 14 H -0.215 1.215 15 H -0.167 1.167 16 C -0.075 4.075 17 C -0.134 4.134 18 C -0.142 4.142 19 C -0.154 4.154 20 C -0.140 4.140 21 C -0.169 4.169 22 C -0.104 4.104 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.987 11.110 7.149 13.545 hybrid contribution 0.887 -0.188 0.115 0.914 sum -2.099 10.921 7.264 13.283 Atomic orbital electron populations 1.22859 0.88267 1.02680 1.01730 1.68383 1.10609 1.18898 1.24500 1.24240 0.96504 0.91685 0.99238 1.23246 0.96437 0.94565 0.90533 1.60854 1.31816 1.06801 1.30268 1.18532 0.86530 0.90898 0.92533 0.97151 1.20867 1.18120 1.02316 1.09597 0.94779 1.25756 0.99407 0.94882 0.97713 1.70033 1.39967 1.07778 1.40382 0.86160 0.80007 0.79180 0.79965 1.19681 1.21530 1.16745 1.20448 0.94591 0.94612 0.97847 1.21011 0.99885 0.95368 0.97126 1.21421 0.97084 0.96065 0.99618 1.21369 0.93689 1.00982 0.99373 1.21323 1.00536 0.94652 0.97527 1.21206 0.95733 0.97747 1.02251 1.23865 0.97195 0.99009 0.90358 0.94502 0.91218 0.89708 0.88236 0.89273 0.93187 0.84759 0.92710 0.86845 0.84108 0.83394 0.84150 0.87606 0.91130 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.65 127.69 1.23 1.07 16 2 N -0.50 -15.92 6.56 -934.55 -6.13 -22.05 16 3 C 0.01 0.35 7.56 86.40 0.65 1.01 16 4 C 0.06 2.37 4.20 46.48 0.20 2.57 16 5 N -0.67 -26.10 5.92 -481.09 -2.85 -28.94 16 6 C 0.22 10.11 2.13 43.42 0.09 10.20 16 7 H 0.01 0.50 3.96 -2.38 -0.01 0.49 16 8 C -0.47 -26.27 8.96 25.60 0.23 -26.04 16 9 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 10 C 0.02 1.18 5.47 84.66 0.46 1.65 16 11 N -0.94 -58.59 13.96 21.45 0.30 -58.29 16 12 Si 0.92 44.21 26.94 68.60 1.85 46.05 16 13 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 14 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 15 H -0.24 -10.71 5.63 99.48 0.56 -10.15 16 16 C -0.07 -3.02 4.64 -19.87 -0.09 -3.12 16 17 C -0.12 -4.28 9.08 22.27 0.20 -4.07 16 18 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 19 C -0.14 -3.70 10.05 22.27 0.22 -3.48 16 20 C -0.12 -3.68 10.05 22.27 0.22 -3.45 16 21 C -0.15 -5.63 9.67 22.27 0.22 -5.41 16 22 C 0.03 0.98 7.77 86.40 0.67 1.65 16 23 H 0.04 0.91 7.62 -2.39 -0.02 0.89 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.09 2.24 7.92 -2.38 -0.02 2.22 16 28 H 0.05 2.08 7.48 -2.38 -0.02 2.07 16 29 H 0.33 11.27 7.97 -89.69 -0.72 10.56 16 30 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 31 H 0.11 4.35 7.91 -2.91 -0.02 4.33 16 32 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.11 3.99 6.82 -2.91 -0.02 3.97 16 36 H 0.07 2.78 7.62 -2.38 -0.02 2.77 16 37 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -65.46 302.89 -2.10 -67.56 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.19 Total: 26.58 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 4.53 Total: -30.91 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -8.67 Total: -109.28 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.85 Total: 46.05 kcal Total: -65.46 -2.10 -67.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379142114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.570 kcal (2) G-P(sol) polarization free energy of solvation -65.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds