Wall clock time and date at job start Mon Mar 30 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48504 * 109.47284 * 269.99593 * 3 2 1 5 5 H 1.48495 * 109.47221 * 30.00042 * 3 2 1 6 6 H 1.48504 * 109.46917 * 150.00147 * 3 2 1 7 7 C 1.37875 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00231 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99788 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.46741 * 179.97438 * 9 7 2 11 11 C 1.46909 * 110.99712 * 180.02562 * 10 9 7 12 12 H 1.08992 * 110.78269 * 31.74874 * 11 10 9 13 13 C 1.54602 * 110.71860 * 268.49934 * 11 10 9 14 14 C 1.53991 * 105.13811 * 219.68435 * 13 11 10 15 15 N 1.48071 * 107.14382 * 358.91915 * 14 13 11 16 16 C 1.39667 * 111.16183 * 145.63165 * 15 14 13 17 17 C 1.38918 * 120.07838 * 296.08711 * 16 15 14 18 18 C 1.38096 * 119.92638 * 179.77033 * 17 16 15 19 19 C 1.38288 * 120.07503 * 0.50646 * 18 17 16 20 20 C 1.38281 * 120.15074 * 359.74816 * 19 18 17 21 21 C 1.38103 * 120.07515 * 359.97438 * 20 19 18 22 22 C 1.48530 * 105.73238 * 25.08162 * 15 14 13 23 23 H 0.97000 * 119.99820 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46903 * 60.00008 * 9 7 2 25 25 H 1.08993 * 109.47131 * 299.99922 * 9 7 2 26 26 H 1.00898 * 111.00595 * 56.04597 * 10 9 7 27 27 H 1.08992 * 110.31286 * 338.60132 * 13 11 10 28 28 H 1.09007 * 110.30402 * 100.76981 * 13 11 10 29 29 H 1.08999 * 109.91739 * 118.12993 * 14 13 11 30 30 H 1.09002 * 109.91936 * 239.23017 * 14 13 11 31 31 H 1.08004 * 120.03282 * 0.02562 * 17 16 15 32 32 H 1.08007 * 119.96205 * 180.25536 * 18 17 16 33 33 H 1.08001 * 119.92344 * 179.72129 * 19 18 17 34 34 H 1.07998 * 119.96867 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.03930 * 179.97438 * 21 20 19 36 36 H 1.09001 * 110.66464 * 202.50337 * 22 15 14 37 37 H 1.08998 * 110.67446 * 79.54093 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4697 -2.6181 0.0011 12 1 5.8790 -1.7624 0.5379 13 6 6.0166 -2.6700 -1.4440 14 6 7.2031 -3.6502 -1.3900 15 7 7.3323 -4.1021 0.0141 16 6 7.7581 -5.4307 0.0790 17 6 6.9553 -6.4447 -0.4283 18 6 7.3815 -7.7568 -0.3668 19 6 8.6012 -8.0630 0.2084 20 6 9.4005 -7.0568 0.7191 21 6 8.9830 -5.7419 0.6557 22 6 5.9823 -3.9459 0.6133 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8894 26 1 3.6260 -3.0951 -0.7816 27 1 5.2508 -3.0404 -2.1253 28 1 6.3558 -1.6821 -1.7558 29 1 7.0075 -4.5060 -2.0360 30 1 8.1159 -3.1462 -1.7078 31 1 6.0008 -6.2065 -0.8740 32 1 6.7596 -8.5451 -0.7647 33 1 8.9301 -9.0905 0.2593 34 1 10.3527 -7.2992 1.1673 35 1 9.6075 -4.9565 1.0552 36 1 6.0497 -3.8683 1.6985 37 1 5.3361 -4.7760 0.3278 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379436548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:15 Heat of formation + Delta-G solvation = 39.992961 kcal Electronic energy + Delta-G solvation = -17205.946497 eV Core-core repulsion = 14562.000853 eV Total energy + Delta-G solvation = -2643.945644 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23753 -37.98791 -35.03166 -32.61792 -31.21496 -31.00433 -28.71069 -28.24119 -25.80322 -23.02982 -22.36590 -21.36165 -20.50702 -20.36815 -17.49145 -16.73642 -16.14505 -15.72397 -15.13578 -14.57748 -14.25402 -13.95911 -13.56694 -13.54568 -13.35193 -13.03852 -12.60654 -12.30378 -12.18625 -11.74599 -11.60288 -11.40244 -11.29007 -11.19646 -10.71809 -10.53516 -10.31439 -9.81570 -9.31339 -9.04796 -8.75174 -8.62433 -8.53330 -7.52921 -6.07929 -4.06258 1.16951 1.28820 3.27165 3.35115 3.37867 3.62204 3.86568 4.40337 4.76383 4.82415 4.84462 4.88283 4.99646 5.09265 5.22611 5.26905 5.32197 5.42344 5.48086 5.60167 5.77472 5.82444 5.89951 5.97353 6.01995 6.23527 6.26303 6.28314 6.38685 6.45600 6.69389 6.73403 6.79926 6.99077 7.39640 7.58191 7.85978 8.27205 8.61672 8.99646 9.53794 11.05347 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.050518 B = 0.004166 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.127121 B = 6718.742903 C = 6966.137539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.671 5.671 11 C 0.085 3.915 12 H 0.086 0.914 13 C -0.162 4.162 14 C 0.046 3.954 15 N -0.490 5.490 16 C 0.090 3.910 17 C -0.149 4.149 18 C -0.112 4.112 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.098 4.098 22 C 0.051 3.949 23 H 0.264 0.736 24 H 0.027 0.973 25 H -0.019 1.019 26 H 0.336 0.664 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.482 -12.457 -1.707 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.038 3.962 10 N -0.300 5.300 11 C -0.028 4.028 12 H 0.104 0.896 13 C -0.202 4.202 14 C -0.080 4.080 15 N -0.212 5.212 16 C -0.004 4.004 17 C -0.169 4.169 18 C -0.130 4.130 19 C -0.147 4.147 20 C -0.136 4.136 21 C -0.117 4.117 22 C -0.076 4.076 23 H 0.074 0.926 24 H 0.045 0.955 25 H -0.001 1.001 26 H 0.155 0.845 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.104 0.896 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.624 -12.057 -0.737 22.199 hybrid contribution -0.061 0.692 -1.399 1.562 sum 18.563 -11.366 -2.136 21.871 Atomic orbital electron populations 1.69898 1.06183 1.26922 1.50871 1.24905 0.94755 0.98983 0.94675 0.86814 0.80373 0.83813 0.78448 1.20352 1.21126 1.19098 1.21059 0.88947 0.94819 1.50774 0.90334 1.20032 0.96592 0.84739 0.94859 1.60428 1.03301 1.16939 1.49361 1.22477 0.90031 0.97073 0.93170 0.89592 1.23228 0.97616 0.99686 0.99656 1.22888 0.99122 0.97939 0.88095 1.62427 1.26799 1.16567 1.15376 1.19095 0.94617 0.88849 0.97862 1.21743 1.00414 0.93708 1.01038 1.21036 0.96435 0.96123 0.99438 1.21147 0.94948 0.99214 0.99419 1.21095 0.99804 0.92675 0.99978 1.21041 0.95472 0.96380 0.98839 1.23322 0.86319 0.97883 1.00076 0.92619 0.95456 1.00138 0.84549 0.91074 0.91001 0.93532 0.90452 0.86007 0.86179 0.86232 0.85931 0.85440 0.89641 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.76 9.87 -34.44 -0.34 -15.10 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 9 C 0.17 3.97 4.37 -4.97 -0.02 3.95 16 10 N -0.67 -13.57 6.37 -106.02 -0.68 -14.24 16 11 C 0.08 1.41 3.39 -65.84 -0.22 1.19 16 12 H 0.09 1.51 7.83 -51.93 -0.41 1.10 16 13 C -0.16 -2.31 6.63 -25.37 -0.17 -2.48 16 14 C 0.05 0.59 6.55 -2.66 -0.02 0.57 16 15 N -0.49 -6.70 5.28 -167.03 -0.88 -7.58 16 16 C 0.09 1.15 4.84 -83.79 -0.41 0.74 16 17 C -0.15 -1.79 7.97 -39.38 -0.31 -2.10 16 18 C -0.11 -1.15 10.04 -39.61 -0.40 -1.55 16 19 C -0.13 -1.22 10.04 -39.55 -0.40 -1.61 16 20 C -0.12 -1.12 10.04 -39.61 -0.40 -1.52 16 21 C -0.10 -1.12 9.97 -39.38 -0.39 -1.51 16 22 C 0.05 0.76 6.07 -1.90 -0.01 0.75 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 24 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 25 H -0.02 -0.45 7.57 -51.93 -0.39 -0.84 16 26 H 0.34 6.57 8.06 -39.29 -0.32 6.26 16 27 H 0.07 1.01 7.53 -51.93 -0.39 0.62 16 28 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.05 0.57 6.97 -51.93 -0.36 0.21 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.12 1.46 7.02 -52.48 -0.37 1.09 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.84 6.40 -51.93 -0.33 0.50 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -30.39 300.62 -9.60 -39.98 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.49 Total: 4.07 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -3.18 Total: -16.78 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.78 Total: -48.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.39 -9.60 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379436548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.977 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds