Wall clock time and date at job start Mon Mar 30 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48504 * 109.47284 * 269.99593 * 3 2 1 5 5 H 1.48495 * 109.47221 * 30.00042 * 3 2 1 6 6 H 1.48504 * 109.46917 * 150.00147 * 3 2 1 7 7 C 1.37875 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00231 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99788 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.46741 * 179.97438 * 9 7 2 11 11 C 1.46909 * 110.99712 * 180.02562 * 10 9 7 12 12 H 1.08992 * 110.78269 * 31.74874 * 11 10 9 13 13 C 1.54602 * 110.71860 * 268.49934 * 11 10 9 14 14 C 1.53991 * 105.13811 * 219.68435 * 13 11 10 15 15 N 1.48071 * 107.14382 * 358.91915 * 14 13 11 16 16 C 1.39667 * 111.16183 * 145.63165 * 15 14 13 17 17 C 1.38918 * 120.07838 * 296.08711 * 16 15 14 18 18 C 1.38096 * 119.92638 * 179.77033 * 17 16 15 19 19 C 1.38288 * 120.07503 * 0.50646 * 18 17 16 20 20 C 1.38281 * 120.15074 * 359.74816 * 19 18 17 21 21 C 1.38103 * 120.07515 * 359.97438 * 20 19 18 22 22 C 1.48530 * 105.73238 * 25.08162 * 15 14 13 23 23 H 0.97000 * 119.99820 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46903 * 60.00008 * 9 7 2 25 25 H 1.08993 * 109.47131 * 299.99922 * 9 7 2 26 26 H 1.00898 * 111.00595 * 56.04597 * 10 9 7 27 27 H 1.08992 * 110.31286 * 338.60132 * 13 11 10 28 28 H 1.09007 * 110.30402 * 100.76981 * 13 11 10 29 29 H 1.08999 * 109.91739 * 118.12993 * 14 13 11 30 30 H 1.09002 * 109.91936 * 239.23017 * 14 13 11 31 31 H 1.08004 * 120.03282 * 0.02562 * 17 16 15 32 32 H 1.08007 * 119.96205 * 180.25536 * 18 17 16 33 33 H 1.08001 * 119.92344 * 179.72129 * 19 18 17 34 34 H 1.07998 * 119.96867 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.03930 * 179.97438 * 21 20 19 36 36 H 1.09001 * 110.66464 * 202.50337 * 22 15 14 37 37 H 1.08998 * 110.67446 * 79.54093 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4697 -2.6181 0.0011 12 1 5.8790 -1.7624 0.5379 13 6 6.0166 -2.6700 -1.4440 14 6 7.2031 -3.6502 -1.3900 15 7 7.3323 -4.1021 0.0141 16 6 7.7581 -5.4307 0.0790 17 6 6.9553 -6.4447 -0.4283 18 6 7.3815 -7.7568 -0.3668 19 6 8.6012 -8.0630 0.2084 20 6 9.4005 -7.0568 0.7191 21 6 8.9830 -5.7419 0.6557 22 6 5.9823 -3.9459 0.6133 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8894 26 1 3.6260 -3.0951 -0.7816 27 1 5.2508 -3.0404 -2.1253 28 1 6.3558 -1.6821 -1.7558 29 1 7.0075 -4.5060 -2.0360 30 1 8.1159 -3.1462 -1.7078 31 1 6.0008 -6.2065 -0.8740 32 1 6.7596 -8.5451 -0.7647 33 1 8.9301 -9.0905 0.2593 34 1 10.3527 -7.2992 1.1673 35 1 9.6075 -4.9565 1.0552 36 1 6.0497 -3.8683 1.6985 37 1 5.3361 -4.7760 0.3278 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379436548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:15 Heat of formation + Delta-G solvation = 19.600908 kcal Electronic energy + Delta-G solvation = -17206.830763 eV Core-core repulsion = 14562.000853 eV Total energy + Delta-G solvation = -2644.829909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22603 -39.02944 -36.54914 -34.58614 -32.52364 -31.82134 -30.08131 -29.44305 -27.43628 -23.96480 -23.35391 -23.20998 -21.70482 -21.48128 -18.99546 -18.27006 -17.35421 -16.72793 -16.51480 -15.88385 -15.51308 -15.23753 -14.91549 -14.87356 -14.38746 -14.37167 -14.08216 -13.94966 -13.28400 -13.13000 -12.92098 -12.68127 -12.47629 -12.24734 -12.12022 -12.01436 -11.80051 -11.71373 -11.44879 -10.83088 -9.85217 -9.67271 -9.51503 -9.15357 -8.31253 -6.36033 0.34226 0.48485 1.34299 1.36890 1.48050 2.33374 2.78311 2.82351 3.02993 3.49829 3.64488 3.89088 4.01492 4.05129 4.10377 4.26604 4.29485 4.47754 4.53145 4.57000 4.70870 4.78026 4.78745 4.85675 4.88439 5.01172 5.05081 5.11514 5.15733 5.48905 5.50725 5.57140 5.61322 5.62782 5.93262 5.96344 6.43497 6.52626 6.63309 6.74395 7.29108 8.85520 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.050518 B = 0.004166 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.127121 B = 6718.742903 C = 6966.137539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.250 1.250 7 C -0.530 4.530 8 H 0.037 0.963 9 C 0.178 3.822 10 N -0.679 5.679 11 C 0.082 3.918 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.051 3.949 15 N -0.490 5.490 16 C 0.066 3.934 17 C -0.164 4.164 18 C -0.118 4.118 19 C -0.127 4.127 20 C -0.115 4.115 21 C -0.109 4.109 22 C 0.060 3.940 23 H 0.268 0.732 24 H 0.024 0.976 25 H -0.010 1.010 26 H 0.338 0.662 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.202 -12.757 -1.914 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.174 1.174 7 C -0.568 4.568 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.309 5.309 11 C -0.029 4.029 12 H 0.097 0.903 13 C -0.195 4.195 14 C -0.075 4.075 15 N -0.212 5.212 16 C -0.029 4.029 17 C -0.184 4.184 18 C -0.137 4.137 19 C -0.144 4.144 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.067 4.067 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.007 0.993 26 H 0.156 0.844 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.155 0.845 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.371 -12.385 -0.948 24.719 hybrid contribution -0.912 0.619 -1.318 1.719 sum 20.459 -11.766 -2.266 23.710 Atomic orbital electron populations 1.70051 1.08201 1.28269 1.52243 1.25881 0.95639 1.03336 0.94083 0.85652 0.79347 0.78311 0.79229 1.18986 1.20660 1.17399 1.21343 0.91425 0.93438 1.50589 0.94490 1.19751 0.93561 0.86895 0.94832 1.60304 1.05877 1.14894 1.49844 1.22481 0.87621 0.97773 0.95055 0.90267 1.23135 0.98112 1.00547 0.97728 1.22875 0.98899 0.97750 0.87973 1.62411 1.25384 1.17717 1.15654 1.19225 0.95672 0.88372 0.99582 1.21767 1.00264 0.94565 1.01787 1.21317 0.97209 0.95825 0.99307 1.21530 0.94230 1.00664 0.98020 1.21442 1.00798 0.91887 0.99194 1.21218 0.95130 0.97538 0.98875 1.23133 0.87290 0.96684 0.99636 0.92317 0.95775 0.99280 0.84355 0.91209 0.90418 0.93044 0.89151 0.86862 0.84479 0.83414 0.83201 0.84992 0.90345 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 44.16 27.47 68.60 1.88 46.04 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.53 -30.91 9.87 25.60 0.25 -30.65 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 9 C 0.18 8.51 4.37 85.56 0.37 8.89 16 10 N -0.68 -27.67 6.37 -489.34 -3.12 -30.79 16 11 C 0.08 2.69 3.39 46.12 0.16 2.85 16 12 H 0.08 2.71 7.83 -2.39 -0.02 2.69 16 13 C -0.16 -4.26 6.63 31.47 0.21 -4.05 16 14 C 0.05 1.24 6.55 86.41 0.57 1.81 16 15 N -0.49 -12.93 5.28 -682.35 -3.60 -16.53 16 16 C 0.07 1.60 4.84 38.22 0.18 1.78 16 17 C -0.16 -3.79 7.97 22.40 0.18 -3.61 16 18 C -0.12 -2.21 10.04 22.25 0.22 -1.98 16 19 C -0.13 -2.00 10.04 22.29 0.22 -1.78 16 20 C -0.11 -1.88 10.04 22.25 0.22 -1.66 16 21 C -0.11 -2.27 9.97 22.40 0.22 -2.05 16 22 C 0.06 1.77 6.07 86.65 0.53 2.30 16 23 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 24 H 0.02 1.17 7.14 -2.39 -0.02 1.16 16 25 H -0.01 -0.48 7.57 -2.39 -0.02 -0.50 16 26 H 0.34 13.46 8.06 -89.70 -0.72 12.74 16 27 H 0.07 1.93 7.53 -2.39 -0.02 1.91 16 28 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.05 1.20 6.97 -2.39 -0.02 1.18 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.11 2.72 7.02 -2.91 -0.02 2.70 16 32 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.05 1.55 6.40 -2.39 -0.02 1.54 16 Total: -1.00 -66.02 300.62 -0.46 -66.48 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.27 Total: 21.23 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 3.80 Total: -27.21 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -6.42 Total: -106.54 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Total: -66.02 -0.46 -66.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379436548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.082 kcal (2) G-P(sol) polarization free energy of solvation -66.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds