Wall clock time and date at job start Mon Mar 30 2020 04:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99674 * 2 1 4 4 C 1.50704 * 109.47061 * 269.99769 * 3 2 1 5 5 H 1.08003 * 119.99685 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00331 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99862 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00358 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47473 * 89.99124 * 8 6 4 10 10 H 1.48501 * 109.47043 * 209.99849 * 8 6 4 11 11 H 1.48510 * 109.46967 * 329.99682 * 8 6 4 12 12 C 1.39674 * 120.00284 * 179.97438 * 2 1 3 13 13 C 1.38914 * 120.07144 * 0.02562 * 12 2 1 14 14 C 1.38105 * 119.92209 * 180.02562 * 13 12 2 15 15 C 1.38283 * 120.07406 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.92509 * 180.02562 * 15 14 13 17 17 C 1.53515 * 114.16962 * 239.99954 * 16 15 14 18 18 N 1.47481 * 87.93334 * 220.13408 * 17 16 15 19 19 C 1.47488 * 87.83530 * 27.00963 * 18 17 16 20 20 C 1.38291 * 120.15137 * 0.27152 * 15 14 13 21 21 C 1.38104 * 120.07293 * 359.45392 * 20 15 14 22 22 H 1.08998 * 109.47285 * 270.00496 * 1 2 3 23 23 H 1.08997 * 109.47169 * 30.00219 * 1 2 3 24 24 H 1.08998 * 109.46770 * 150.00297 * 1 2 3 25 25 H 1.08996 * 109.47763 * 29.99534 * 3 2 1 26 26 H 1.08998 * 109.47423 * 150.00004 * 3 2 1 27 27 H 0.96993 * 120.00063 * 180.02562 * 7 6 4 28 28 H 1.07999 * 120.03743 * 359.97438 * 13 12 2 29 29 H 1.07994 * 119.95714 * 179.97438 * 14 13 12 30 30 H 1.09002 * 113.25968 * 12.94690 * 16 15 14 31 31 H 1.09004 * 113.47747 * 105.37313 * 17 16 15 32 32 H 1.08995 * 113.53124 * 334.91374 * 17 16 15 33 33 H 1.00901 * 110.99857 * 138.69928 * 18 17 16 34 34 H 1.08996 * 113.47304 * 87.75121 * 19 18 17 35 35 H 1.08997 * 113.47652 * 218.22256 * 19 18 17 36 36 H 1.07999 * 119.95959 * 179.70616 * 20 15 14 37 37 H 1.07997 * 120.03565 * 180.27561 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6729 7 7 3.5541 3.6177 -0.6733 8 14 3.4376 3.4171 -3.4340 9 1 2.3077 4.2605 -3.9001 10 1 4.6982 4.1994 -3.4969 11 1 3.5539 2.2200 -4.3053 12 6 2.1635 -1.2096 0.0005 13 6 1.4705 -2.4135 0.0005 14 6 2.1642 -3.6077 0.0016 15 6 3.5470 -3.6058 0.0032 16 6 4.3005 -4.9108 0.0038 17 6 5.2199 -5.1052 1.2177 18 7 6.2158 -5.6925 0.3022 19 6 5.6229 -4.8784 -0.7753 20 6 4.2400 -2.4091 0.0094 21 6 3.5526 -1.2113 0.0026 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6084 2.0285 0.5137 26 1 3.1499 1.1386 0.5138 27 1 4.0309 4.4436 -0.8505 28 1 0.3905 -2.4156 0.0005 29 1 1.6260 -4.5440 0.0020 30 1 3.6709 -5.7716 -0.2215 31 1 4.8304 -5.8144 1.9483 32 1 5.5457 -4.1692 1.6712 33 1 7.1462 -5.3728 0.5267 34 1 6.0559 -3.8813 -0.8544 35 1 5.5750 -5.3952 -1.7337 36 1 5.3199 -2.4112 0.0155 37 1 4.0944 -0.2771 0.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390115683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:43 Heat of formation + Delta-G solvation = 64.985920 kcal Electronic energy + Delta-G solvation = -17389.125915 eV Core-core repulsion = 14746.264048 eV Total energy + Delta-G solvation = -2642.861868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.06239 -38.39138 -35.47756 -32.74279 -30.52515 -30.25633 -27.84902 -26.68793 -25.74792 -24.64812 -22.63502 -21.89356 -20.17399 -18.94140 -17.27637 -16.54285 -15.98987 -15.65660 -14.88093 -14.33097 -14.24276 -13.86762 -13.66525 -12.99573 -12.97814 -12.78787 -12.49325 -12.17430 -11.97163 -11.44461 -11.38311 -11.24725 -10.97321 -10.73242 -10.66720 -10.57097 -10.24543 -9.89994 -9.75640 -9.03367 -8.79335 -8.53840 -8.32630 -6.48926 -6.04643 -4.20765 2.05169 2.17262 3.23784 3.30800 3.35284 4.11017 4.24961 4.34144 4.39267 4.84057 4.94765 5.18446 5.32227 5.39802 5.47231 5.48754 5.59422 5.75175 5.77385 5.83051 5.94652 6.00850 6.03779 6.11874 6.25303 6.38758 6.41602 6.58790 6.91288 7.00031 7.14066 7.17901 7.22998 7.32203 7.55124 7.77843 8.12100 8.23108 8.45049 8.88373 9.46287 10.92481 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.005623 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.756312 B = 4978.132303 C = 5666.127677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.248 3.752 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.239 3.761 13 C -0.220 4.220 14 C -0.065 4.065 15 C -0.164 4.164 16 C -0.056 4.056 17 C 0.006 3.994 18 N -0.635 5.635 19 C 0.003 3.997 20 C -0.070 4.070 21 C -0.184 4.184 22 H 0.036 0.964 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.036 0.964 27 H 0.264 0.736 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.316 0.684 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -12.850 2.538 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.321 5.321 3 C 0.129 3.871 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.132 3.868 13 C -0.243 4.243 14 C -0.084 4.084 15 C -0.167 4.167 16 C -0.075 4.075 17 C -0.124 4.124 18 N -0.259 5.259 19 C -0.128 4.128 20 C -0.089 4.089 21 C -0.207 4.207 22 H 0.054 0.946 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.280 -13.291 2.449 13.517 hybrid contribution 0.463 1.516 -0.858 1.802 sum 0.184 -11.775 1.591 11.883 Atomic orbital electron populations 1.21478 0.81461 1.01954 0.99714 1.47104 1.04404 1.04596 1.75968 1.19291 0.92077 0.78761 0.96999 1.21581 1.36391 1.06454 0.92641 0.92252 1.24961 0.95384 0.96277 0.97417 1.69929 1.38365 1.14343 1.30781 0.86523 0.77729 0.78713 0.84679 1.20586 1.21067 1.19798 1.17960 0.91491 0.86041 0.91273 1.20571 0.99069 0.91375 1.13271 1.20527 0.93191 0.96657 0.97999 1.19086 0.93395 0.93205 1.11053 1.21402 0.94259 0.96055 0.95789 1.23719 0.93601 0.98705 0.96403 1.67304 1.05106 1.47737 1.05719 1.23768 0.94947 0.97080 0.96959 1.20593 0.98436 0.91620 0.98228 1.20861 0.92729 0.98657 1.08446 0.94585 0.91430 0.92660 0.95174 0.94646 0.92625 0.86805 0.87277 0.88356 0.90207 0.91398 0.87197 0.91095 0.90096 0.87434 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.19 59.85 0.61 2.31 16 2 N -0.62 -13.06 2.99 -181.00 -0.54 -13.60 16 3 C 0.25 6.18 4.92 -5.19 -0.03 6.15 16 4 C -0.53 -14.40 9.39 -34.44 -0.32 -14.73 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 7 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.24 4.80 6.55 -83.79 -0.55 4.25 16 13 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 14 C -0.06 -1.00 9.71 -39.61 -0.38 -1.38 16 15 C -0.16 -2.50 5.35 -104.59 -0.56 -3.06 16 16 C -0.06 -0.71 4.30 -91.24 -0.39 -1.11 16 17 C 0.01 0.07 8.10 -7.54 -0.06 0.01 16 18 N -0.63 -7.30 8.71 -122.63 -1.07 -8.37 16 19 C 0.00 0.03 8.02 -7.53 -0.06 -0.03 16 20 C -0.07 -1.17 8.68 -39.61 -0.34 -1.51 16 21 C -0.18 -3.68 9.21 -39.38 -0.36 -4.04 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 24 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 25 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 26 H 0.04 0.93 6.19 -51.93 -0.32 0.61 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.11 1.76 6.14 -52.49 -0.32 1.44 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 33 H 0.32 3.13 8.91 -39.29 -0.35 2.78 16 34 H 0.07 0.85 6.21 -51.93 -0.32 0.53 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.11 1.60 6.50 -52.49 -0.34 1.26 16 37 H 0.13 2.89 6.14 -52.49 -0.32 2.57 16 LS Contribution 301.82 15.07 4.55 4.55 Total: -1.00 -28.55 301.82 -9.46 -38.00 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.20 Total: 3.70 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.91 Total: -15.68 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.87 Total: -46.70 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.55 -9.46 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390115683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.990 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds