Wall clock time and date at job start Mon Mar 30 2020 04:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99674 * 2 1 4 4 C 1.50704 * 109.47061 * 269.99769 * 3 2 1 5 5 H 1.08003 * 119.99685 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00331 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99862 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00358 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47473 * 89.99124 * 8 6 4 10 10 H 1.48501 * 109.47043 * 209.99849 * 8 6 4 11 11 H 1.48510 * 109.46967 * 329.99682 * 8 6 4 12 12 C 1.39674 * 120.00284 * 179.97438 * 2 1 3 13 13 C 1.38914 * 120.07144 * 0.02562 * 12 2 1 14 14 C 1.38105 * 119.92209 * 180.02562 * 13 12 2 15 15 C 1.38283 * 120.07406 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.92509 * 180.02562 * 15 14 13 17 17 C 1.53515 * 114.16962 * 239.99954 * 16 15 14 18 18 N 1.47481 * 87.93334 * 220.13408 * 17 16 15 19 19 C 1.47488 * 87.83530 * 27.00963 * 18 17 16 20 20 C 1.38291 * 120.15137 * 0.27152 * 15 14 13 21 21 C 1.38104 * 120.07293 * 359.45392 * 20 15 14 22 22 H 1.08998 * 109.47285 * 270.00496 * 1 2 3 23 23 H 1.08997 * 109.47169 * 30.00219 * 1 2 3 24 24 H 1.08998 * 109.46770 * 150.00297 * 1 2 3 25 25 H 1.08996 * 109.47763 * 29.99534 * 3 2 1 26 26 H 1.08998 * 109.47423 * 150.00004 * 3 2 1 27 27 H 0.96993 * 120.00063 * 180.02562 * 7 6 4 28 28 H 1.07999 * 120.03743 * 359.97438 * 13 12 2 29 29 H 1.07994 * 119.95714 * 179.97438 * 14 13 12 30 30 H 1.09002 * 113.25968 * 12.94690 * 16 15 14 31 31 H 1.09004 * 113.47747 * 105.37313 * 17 16 15 32 32 H 1.08995 * 113.53124 * 334.91374 * 17 16 15 33 33 H 1.00901 * 110.99857 * 138.69928 * 18 17 16 34 34 H 1.08996 * 113.47304 * 87.75121 * 19 18 17 35 35 H 1.08997 * 113.47652 * 218.22256 * 19 18 17 36 36 H 1.07999 * 119.95959 * 179.70616 * 20 15 14 37 37 H 1.07997 * 120.03565 * 180.27561 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6729 7 7 3.5541 3.6177 -0.6733 8 14 3.4376 3.4171 -3.4340 9 1 2.3077 4.2605 -3.9001 10 1 4.6982 4.1994 -3.4969 11 1 3.5539 2.2200 -4.3053 12 6 2.1635 -1.2096 0.0005 13 6 1.4705 -2.4135 0.0005 14 6 2.1642 -3.6077 0.0016 15 6 3.5470 -3.6058 0.0032 16 6 4.3005 -4.9108 0.0038 17 6 5.2199 -5.1052 1.2177 18 7 6.2158 -5.6925 0.3022 19 6 5.6229 -4.8784 -0.7753 20 6 4.2400 -2.4091 0.0094 21 6 3.5526 -1.2113 0.0026 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6084 2.0285 0.5137 26 1 3.1499 1.1386 0.5138 27 1 4.0309 4.4436 -0.8505 28 1 0.3905 -2.4156 0.0005 29 1 1.6260 -4.5440 0.0020 30 1 3.6709 -5.7716 -0.2215 31 1 4.8304 -5.8144 1.9483 32 1 5.5457 -4.1692 1.6712 33 1 7.1462 -5.3728 0.5267 34 1 6.0559 -3.8813 -0.8544 35 1 5.5750 -5.3952 -1.7337 36 1 5.3199 -2.4112 0.0155 37 1 4.0944 -0.2771 0.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390115683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:42 Heat of formation + Delta-G solvation = 47.005572 kcal Electronic energy + Delta-G solvation = -17389.905602 eV Core-core repulsion = 14746.264048 eV Total energy + Delta-G solvation = -2643.641554 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17302 -39.69732 -36.98938 -34.75642 -31.92036 -31.60457 -29.64306 -27.91672 -26.67251 -26.28479 -24.28174 -23.24596 -21.58887 -20.05284 -18.64888 -18.52028 -17.29861 -16.96667 -16.41770 -15.89293 -15.60352 -15.34355 -14.77986 -14.50390 -14.30884 -14.15143 -13.98161 -13.48240 -13.24264 -13.17846 -13.02728 -12.70020 -12.55948 -12.37273 -12.22987 -11.86108 -11.69822 -11.56346 -11.33839 -10.65050 -10.28991 -9.94572 -9.68852 -8.36724 -7.79527 -6.38584 0.68207 0.82044 1.36286 1.37310 1.48350 2.33506 2.62794 3.02742 3.05436 3.32335 3.81798 3.90614 4.11592 4.23165 4.32612 4.43723 4.45963 4.53787 4.60864 4.70372 4.82703 4.86696 4.87868 4.91016 4.99335 5.09700 5.10219 5.13844 5.27011 5.31700 5.59078 5.67523 5.69381 5.93001 6.06193 6.18380 6.32874 6.49094 6.81810 6.92933 7.33513 8.82302 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.005623 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.756312 B = 4978.132303 C = 5666.127677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.632 5.632 3 C 0.266 3.734 4 C -0.541 4.541 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.272 1.272 12 C 0.209 3.791 13 C -0.215 4.215 14 C -0.062 4.062 15 C -0.151 4.151 16 C -0.058 4.058 17 C 0.010 3.990 18 N -0.637 5.637 19 C 0.003 3.997 20 C -0.070 4.070 21 C -0.214 4.214 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.009 0.991 26 H 0.011 0.989 27 H 0.267 0.733 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.326 0.674 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -15.264 1.823 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.144 3.856 4 C -0.580 4.580 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.197 1.197 12 C 0.105 3.895 13 C -0.238 4.238 14 C -0.080 4.080 15 C -0.154 4.154 16 C -0.076 4.076 17 C -0.121 4.121 18 N -0.261 5.261 19 C -0.128 4.128 20 C -0.089 4.089 21 C -0.237 4.237 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.632 -15.743 1.741 15.851 hybrid contribution 0.618 2.127 -0.588 2.292 sum -0.014 -13.615 1.152 13.664 Atomic orbital electron populations 1.21607 0.79382 1.02564 1.00979 1.46963 1.05637 1.03692 1.77667 1.18776 0.91075 0.80294 0.95438 1.21777 1.36395 1.06538 0.93314 0.93286 1.25772 0.95050 0.96301 1.01465 1.70035 1.39023 1.14787 1.32831 0.85504 0.77951 0.78246 0.79679 1.19563 1.20401 1.19706 1.18249 0.91656 0.86580 0.93062 1.20831 1.00160 0.90672 1.12104 1.20969 0.93372 0.97431 0.96232 1.19406 0.93784 0.93692 1.08476 1.21485 0.94480 0.94854 0.96802 1.23683 0.93260 0.98915 0.96196 1.67293 1.05773 1.47602 1.05438 1.23751 0.94531 0.97128 0.97352 1.20739 0.99237 0.91213 0.97680 1.20765 0.93249 0.98479 1.11190 0.92918 0.92545 0.90258 0.97293 0.97111 0.92376 0.84796 0.83614 0.86874 0.89155 0.91727 0.86105 0.91468 0.89537 0.86091 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.36 10.19 127.77 1.30 4.66 16 2 N -0.63 -27.57 2.99 -726.55 -2.17 -29.74 16 3 C 0.27 13.97 4.92 85.63 0.42 14.39 16 4 C -0.54 -30.41 9.39 25.60 0.24 -30.17 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.01 0.75 5.46 84.65 0.46 1.21 16 7 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 8 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.21 8.47 6.55 38.21 0.25 8.72 16 13 C -0.21 -6.95 9.21 22.40 0.21 -6.75 16 14 C -0.06 -1.69 9.71 22.25 0.22 -1.48 16 15 C -0.15 -4.22 5.35 -19.84 -0.11 -4.32 16 16 C -0.06 -1.27 4.30 -11.20 -0.05 -1.32 16 17 C 0.01 0.20 8.10 83.58 0.68 0.88 16 18 N -0.64 -12.86 8.71 -541.89 -4.72 -17.58 16 19 C 0.00 0.05 8.02 83.58 0.67 0.72 16 20 C -0.07 -2.32 8.68 22.25 0.19 -2.12 16 21 C -0.21 -8.86 9.21 22.40 0.21 -8.65 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 24 H 0.08 2.30 6.20 -2.39 -0.01 2.28 16 25 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 26 H 0.01 0.62 6.19 -2.39 -0.01 0.60 16 27 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.13 3.72 6.14 -2.91 -0.02 3.71 16 29 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.11 2.24 8.11 -2.39 -0.02 2.22 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.37 7.75 -2.39 -0.02 1.35 16 33 H 0.33 5.67 8.91 -89.69 -0.80 4.87 16 34 H 0.07 1.48 6.21 -2.39 -0.01 1.47 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.12 3.56 6.50 -2.91 -0.02 3.54 16 37 H 0.10 4.56 6.14 -2.91 -0.02 4.54 16 Total: -1.00 -62.70 301.82 0.38 -62.32 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.27 Total: 17.30 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.69 Total: -24.23 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -6.61 Total: -101.37 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -62.70 0.38 -62.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390115683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.325 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds