Wall clock time and date at job start Mon Mar 30 2020 04:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.47965 * 111.00075 * 2 1 4 4 C 1.53937 * 86.30223 * 222.47112 * 3 2 1 5 5 N 1.46900 * 113.73213 * 138.12967 * 4 3 2 6 6 C 1.46897 * 110.99856 * 154.99937 * 5 4 3 7 7 C 1.50702 * 109.47192 * 179.97438 * 6 5 4 8 8 C 1.38641 * 119.75009 * 269.73258 * 7 6 5 9 9 C 1.37622 * 120.24736 * 179.71742 * 8 7 6 10 10 C 1.40711 * 119.74052 * 0.57105 * 9 8 7 11 11 C 1.41403 * 120.23725 * 179.68150 * 10 9 8 12 12 H 1.08009 * 119.99509 * 204.39873 * 11 10 9 13 13 C 1.39943 * 120.00232 * 24.40237 * 11 10 9 14 14 N 1.30825 * 120.00174 * 17.85306 * 13 11 10 15 15 Si 1.86797 * 119.99800 * 197.85989 * 13 11 10 16 16 H 1.48499 * 109.47245 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47400 * 119.99638 * 15 13 11 18 18 H 1.48503 * 109.46874 * 239.99636 * 15 13 11 19 19 C 1.40707 * 119.51627 * 359.70183 * 10 9 8 20 20 C 1.37613 * 119.74723 * 359.97438 * 19 10 9 21 21 C 1.48186 * 111.07588 * 260.71062 * 2 1 3 22 22 H 1.08996 * 109.47209 * 59.99765 * 1 2 3 23 23 H 1.08997 * 109.47349 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47258 * 300.00188 * 1 2 3 25 25 H 1.09008 * 113.75991 * 108.10171 * 3 2 1 26 26 H 1.08996 * 113.75720 * 336.84806 * 3 2 1 27 27 H 1.09004 * 113.73412 * 269.30406 * 4 3 2 28 28 H 1.00903 * 110.99960 * 31.04440 * 5 4 3 29 29 H 1.08995 * 109.47630 * 299.99883 * 6 5 4 30 30 H 1.08998 * 109.47237 * 60.00110 * 6 5 4 31 31 H 1.08001 * 119.87454 * 359.97438 * 8 7 6 32 32 H 1.07993 * 120.12222 * 180.27482 * 9 8 7 33 33 H 0.96994 * 119.99891 * 180.02562 * 14 13 11 34 34 H 1.08005 * 120.12567 * 179.97438 * 19 10 9 35 35 H 1.08003 * 119.88096 * 179.97438 * 20 19 10 36 36 H 1.09001 * 113.65847 * 23.13993 * 21 2 1 37 37 H 1.09003 * 113.92340 * 251.81788 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0214 0.8826 -1.0372 5 7 3.2509 1.8241 -2.1413 6 6 4.5770 1.6207 -2.7396 7 6 4.7756 2.6016 -3.8663 8 6 4.4008 2.2542 -5.1550 9 6 4.5721 3.1443 -6.1906 10 6 5.1413 4.4064 -5.9393 11 6 5.3284 5.3264 -6.9966 12 1 6.0849 6.0932 -6.9176 13 6 4.5334 5.2435 -8.1453 14 7 3.4113 4.5715 -8.1171 15 14 5.0746 6.0921 -9.7190 16 1 6.3702 6.7805 -9.4897 17 1 5.2338 5.0826 -10.7963 18 1 4.0496 7.0884 -10.1217 19 6 5.5232 4.7460 -4.6283 20 6 5.3363 3.8428 -3.6070 21 6 2.0018 -0.2232 -1.3646 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.4460 1.6803 0.9483 26 1 1.3002 2.1200 -0.3922 27 1 3.9466 0.5101 -0.5974 28 1 3.1357 2.7779 -1.8329 29 1 5.3451 1.7765 -1.9822 30 1 4.6490 0.6042 -3.1264 31 1 3.9688 1.2830 -5.3463 32 1 4.2754 2.8732 -7.1929 33 1 2.8605 4.5137 -8.9134 34 1 5.9614 5.7119 -4.4244 35 1 5.6291 4.1010 -2.6000 36 1 1.3024 0.0448 -2.1565 37 1 2.4508 -1.2059 -1.5085 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399139798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:04 Heat of formation + Delta-G solvation = 50.092279 kcal Electronic energy + Delta-G solvation = -16951.769247 eV Core-core repulsion = 14308.261542 eV Total energy + Delta-G solvation = -2643.507704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83872 -37.66913 -34.91820 -33.38046 -30.58354 -29.30795 -28.85833 -26.29315 -26.00455 -23.55199 -22.39370 -20.94865 -20.02460 -19.50936 -17.29173 -16.15593 -15.88548 -15.30076 -15.23962 -14.38351 -14.05343 -13.81773 -13.57374 -13.20213 -12.71508 -12.61811 -12.37320 -11.95715 -11.78711 -11.56510 -11.51034 -11.11342 -10.93719 -10.85423 -10.66095 -10.43126 -10.33343 -9.58430 -9.36972 -9.13321 -8.93042 -8.11417 -7.43535 -7.30027 -6.75713 -4.34706 2.73760 3.06924 3.08854 3.12539 3.17117 3.90289 3.93272 4.42314 4.52097 4.71409 5.01185 5.12747 5.33714 5.38215 5.51638 5.57800 5.71932 5.73503 5.77678 5.86598 5.88472 6.09180 6.20897 6.27403 6.36430 6.45669 6.95022 6.96747 7.07646 7.30375 7.36432 7.41351 7.62067 7.68858 7.89632 8.06650 8.15743 8.30976 8.65629 8.90286 8.98736 10.18594 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042750 B = 0.004058 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.814966 B = 6898.511983 C = 7213.423632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.489 5.489 3 C -0.005 4.005 4 C 0.054 3.946 5 N -0.674 5.674 6 C 0.125 3.875 7 C -0.215 4.215 8 C -0.079 4.079 9 C -0.168 4.168 10 C 0.112 3.888 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.791 5.791 15 Si 0.906 3.094 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.228 4.228 20 C -0.085 4.085 21 C 0.012 3.988 22 H 0.037 0.963 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.342 0.658 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.280 0.720 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -5.553 9.264 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.212 5.212 3 C -0.134 4.134 4 C -0.057 4.057 5 N -0.306 5.306 6 C -0.003 4.003 7 C -0.217 4.217 8 C -0.098 4.098 9 C -0.187 4.187 10 C 0.110 3.890 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.142 4.142 14 N -0.416 5.416 15 Si 0.731 3.269 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.200 1.200 19 C -0.247 4.247 20 C -0.104 4.104 21 C -0.118 4.118 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.162 0.838 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.282 -6.456 9.196 11.706 hybrid contribution 0.216 1.321 -0.694 1.508 sum -3.066 -5.135 8.502 10.395 Atomic orbital electron populations 1.22828 0.89706 1.02179 1.01072 1.68450 1.09062 1.18312 1.25344 1.24238 0.97571 0.91937 0.99646 1.23415 0.96918 0.94658 0.90682 1.60791 1.31945 1.07909 1.29908 1.20617 0.87160 0.98339 0.94189 1.18910 1.12555 0.96472 0.93729 1.20504 0.98752 0.97807 0.92726 1.21314 1.05492 0.93594 0.98309 1.17627 0.88474 0.91630 0.91298 1.19635 1.16669 1.13438 0.99554 0.90479 1.25910 0.93514 0.94409 1.00351 1.69842 1.08654 1.33239 1.29909 0.86295 0.79946 0.79587 0.81095 1.18419 1.19697 1.20017 1.20927 1.11812 0.98798 0.93194 1.20356 0.99593 0.93821 0.96645 1.24193 0.97480 0.99652 0.90438 0.94406 0.91353 0.91666 0.89735 0.90556 0.90512 0.83817 0.96199 0.91936 0.89499 0.86532 0.90941 0.89177 0.89920 0.90230 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.06 0.58 0.49 16 2 N -0.49 -5.95 6.56 -245.75 -1.61 -7.56 16 3 C 0.00 -0.05 7.56 -2.76 -0.02 -0.07 16 4 C 0.05 0.71 4.33 -69.09 -0.30 0.42 16 5 N -0.67 -10.62 6.56 -108.97 -0.71 -11.33 16 6 C 0.12 2.16 5.64 -4.98 -0.03 2.13 16 7 C -0.21 -4.60 5.42 -104.33 -0.56 -5.17 16 8 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 9 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 10 C 0.11 3.00 5.57 -106.83 -0.60 2.40 16 11 C -0.46 -12.34 9.05 -37.74 -0.34 -12.68 16 12 H 0.08 1.98 7.91 -52.48 -0.42 1.56 16 13 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 14 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16 15 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 16 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 19 C -0.23 -5.58 9.80 -38.88 -0.38 -5.96 16 20 C -0.09 -1.88 9.67 -39.66 -0.38 -2.26 16 21 C 0.01 0.15 7.79 -2.64 -0.02 0.13 16 22 H 0.04 0.40 7.62 -51.93 -0.40 0.00 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 27 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 28 H 0.34 5.38 8.54 -39.29 -0.34 5.04 16 29 H 0.02 0.32 8.07 -51.93 -0.42 -0.09 16 30 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 33 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 34 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 35 H 0.08 1.60 8.06 -52.48 -0.42 1.17 16 36 H 0.08 1.08 7.62 -51.93 -0.40 0.68 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -27.06 307.80 -10.60 -37.65 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.62 Total: 8.61 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -2.87 Total: -25.69 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -1.72 Total: -38.83 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.06 -10.60 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399139798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.745 kcal (2) G-P(sol) polarization free energy of solvation -27.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds