Wall clock time and date at job start Mon Mar 30 2020 03:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86807 * 120.00315 * 2 1 4 4 H 1.48500 * 109.47032 * 270.00395 * 3 2 1 5 5 H 1.48503 * 109.46870 * 30.00030 * 3 2 1 6 6 H 1.48496 * 109.47397 * 150.00352 * 3 2 1 7 7 C 1.39948 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00048 * 161.78120 * 7 2 1 9 9 C 1.41394 * 119.99769 * 341.50285 * 7 2 1 10 10 C 1.40711 * 120.24636 * 335.85310 * 9 7 2 11 11 C 1.37618 * 119.74512 * 179.76524 * 10 9 7 12 12 C 1.38633 * 120.24757 * 0.51175 * 11 10 9 13 13 C 1.50700 * 119.75052 * 179.71370 * 12 11 10 14 14 N 1.46897 * 109.47381 * 270.02720 * 13 12 11 15 15 C 1.47841 * 110.99883 * 290.84175 * 14 13 12 16 16 C 1.54912 * 104.79698 * 213.63785 * 15 14 13 17 17 C 1.55144 * 101.65076 * 37.07100 * 16 15 14 18 18 H 1.08993 * 110.70654 * 82.73202 * 17 16 15 19 19 N 1.46899 * 110.85323 * 205.89677 * 17 16 15 20 20 C 1.47447 * 110.99816 * 170.00033 * 14 13 12 21 21 C 1.38631 * 120.49950 * 359.74417 * 12 11 10 22 22 C 1.37611 * 120.25417 * 359.97438 * 21 12 11 23 23 H 0.97004 * 119.99851 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.12622 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.87457 * 180.27255 * 11 10 9 26 26 H 1.09002 * 109.46854 * 30.02990 * 13 12 11 27 27 H 1.09001 * 109.47073 * 150.02009 * 13 12 11 28 28 H 1.09005 * 110.37528 * 332.46525 * 15 14 13 29 29 H 1.09001 * 110.37680 * 94.80952 * 15 14 13 30 30 H 1.08998 * 110.99262 * 278.97785 * 16 15 14 31 31 H 1.08998 * 111.02341 * 155.17015 * 16 15 14 32 32 H 1.00899 * 111.00268 * 293.68819 * 19 17 16 33 33 H 1.00896 * 111.00202 * 57.63376 * 19 17 16 34 34 H 1.09005 * 109.88226 * 242.66170 * 20 14 13 35 35 H 1.08999 * 109.88848 * 3.68402 * 20 14 13 36 36 H 1.08005 * 119.87508 * 180.02562 * 21 12 11 37 37 H 1.08004 * 120.13629 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4402 0.6999 7 6 2.0079 -1.2120 -0.0005 8 1 3.0473 -1.2353 -0.2930 9 6 1.3557 -2.4050 0.3874 10 6 0.2296 -2.3555 1.2297 11 6 -0.4002 -3.5227 1.5969 12 6 0.0772 -4.7447 1.1489 13 6 -0.6173 -6.0163 1.5632 14 7 -0.0218 -6.5158 2.8097 15 6 1.3552 -7.0029 2.5810 16 6 1.5242 -8.1878 3.5645 17 6 0.1150 -8.8354 3.5199 18 1 0.0228 -9.4988 2.6601 19 7 -0.1668 -9.5607 4.7659 20 6 -0.8224 -7.6184 3.3731 21 6 1.1890 -4.8057 0.3230 22 6 1.8312 -3.6510 -0.0616 23 1 -0.4850 0.8401 0.0004 24 1 -0.1416 -1.4048 1.5832 25 1 -1.2673 -3.4868 2.2398 26 1 -1.6771 -5.8165 1.7214 27 1 -0.5018 -6.7652 0.7797 28 1 1.4711 -7.3442 1.5523 29 1 2.0776 -6.2180 2.8049 30 1 1.7588 -7.8321 4.5677 31 1 2.2850 -8.8838 3.2112 32 1 0.4438 -10.3576 4.8665 33 1 -0.0965 -8.9483 5.5646 34 1 -1.2133 -7.3314 4.3493 35 1 -1.6455 -7.8601 2.7006 36 1 1.5521 -5.7631 -0.0205 37 1 2.6975 -3.7008 -0.7047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399224150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:24 Heat of formation + Delta-G solvation = 16.978351 kcal Electronic energy + Delta-G solvation = -17336.242019 eV Core-core repulsion = 14691.298387 eV Total energy + Delta-G solvation = -2644.943632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.13671 -37.36526 -34.46065 -33.33053 -30.81910 -29.40834 -29.24588 -27.45728 -25.77020 -23.44492 -21.23073 -20.74097 -20.49858 -19.67460 -17.26435 -16.67308 -15.64686 -15.31681 -14.84765 -14.25270 -13.99322 -13.82359 -13.45583 -12.95322 -12.79869 -12.49830 -12.25158 -11.93767 -11.75030 -11.46958 -11.39287 -11.07603 -10.97329 -10.90294 -10.79185 -10.40482 -10.30845 -9.54172 -9.34322 -9.09138 -8.82731 -7.93308 -7.40158 -7.26584 -6.74228 -4.31690 2.77111 3.07850 3.11338 3.11850 3.20575 3.94666 4.23212 4.43738 4.65266 4.78613 4.90221 5.05815 5.42275 5.47126 5.67403 5.72982 5.78409 5.87442 5.96867 6.06733 6.14696 6.25279 6.31695 6.40799 6.48842 6.94269 6.98824 7.09366 7.23140 7.29608 7.34755 7.43169 7.48836 7.65363 7.91460 8.08777 8.18950 8.33573 8.67914 8.92681 9.01617 10.20472 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.052807 B = 0.004395 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.102210 B = 6369.466449 C = 6508.885091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.168 4.168 11 C -0.079 4.079 12 C -0.207 4.207 13 C 0.115 3.885 14 N -0.522 5.522 15 C 0.054 3.946 16 C -0.167 4.167 17 C 0.070 3.930 18 H 0.083 0.917 19 N -0.840 5.840 20 C 0.046 3.954 21 C -0.083 4.083 22 C -0.228 4.228 23 H 0.280 0.720 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.339 0.661 33 H 0.343 0.657 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -11.182 5.567 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.208 4.208 13 C -0.011 4.011 14 N -0.246 5.246 15 C -0.074 4.074 16 C -0.207 4.207 17 C -0.043 4.043 18 H 0.102 0.898 19 N -0.368 5.368 20 C -0.082 4.082 21 C -0.102 4.102 22 C -0.248 4.248 23 H 0.091 0.909 24 H 0.134 0.866 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.433 -10.736 5.587 12.111 hybrid contribution 1.341 0.408 -0.441 1.469 sum 0.907 -10.328 5.147 11.575 Atomic orbital electron populations 1.69833 1.07596 1.29162 1.35175 1.25901 0.94686 1.01256 0.92230 0.86363 0.80722 0.80762 0.79172 1.19546 1.20087 1.18483 1.19578 0.98262 0.91446 1.40109 0.90571 1.17608 0.91057 0.91919 0.88409 1.21295 0.99479 0.96791 1.01166 1.20485 0.98329 0.92508 0.98521 1.18832 1.01419 0.92734 1.07858 1.20944 0.97370 0.94559 0.88251 1.63760 1.01580 1.31023 1.28284 1.22879 0.91769 0.95690 0.97051 1.23557 0.98086 0.98244 1.00813 1.22723 0.93363 0.95065 0.93140 0.89847 1.58817 1.60899 1.12778 1.04324 1.22830 0.95595 0.88930 1.00844 1.20333 0.95598 0.96092 0.98183 1.20919 1.03828 0.92919 1.07141 0.90914 0.86592 0.89543 0.91664 0.95776 0.93728 0.90111 0.90979 0.91344 0.84854 0.84437 0.90605 0.92740 0.90079 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.69 10.98 55.55 0.61 -20.08 16 2 C 0.08 1.95 5.13 -17.34 -0.09 1.87 16 3 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.48 9.05 -37.74 -0.34 -12.82 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.11 3.04 5.58 -106.82 -0.60 2.44 16 10 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 11 C -0.08 -1.89 9.67 -39.66 -0.38 -2.28 16 12 C -0.21 -4.53 5.12 -104.33 -0.53 -5.07 16 13 C 0.12 2.08 4.71 -4.98 -0.02 2.06 16 14 N -0.52 -8.57 5.15 -232.68 -1.20 -9.77 16 15 C 0.05 0.82 5.60 -2.30 -0.01 0.81 16 16 C -0.17 -1.94 6.75 -24.59 -0.17 -2.11 16 17 C 0.07 0.79 4.09 -65.89 -0.27 0.52 16 18 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 19 N -0.84 -8.05 9.34 -3.12 -0.03 -8.08 16 20 C 0.05 0.63 6.60 -2.83 -0.02 0.61 16 21 C -0.08 -1.87 8.88 -39.66 -0.35 -2.22 16 22 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 23 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 24 H 0.12 3.17 6.16 -52.48 -0.32 2.84 16 25 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 26 H 0.06 1.14 7.97 -51.93 -0.41 0.73 16 27 H 0.02 0.42 7.79 -51.93 -0.40 0.01 16 28 H 0.04 0.68 6.97 -51.93 -0.36 0.32 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.34 2.63 9.08 -39.29 -0.36 2.28 16 33 H 0.34 3.08 8.86 -39.29 -0.35 2.73 16 34 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 35 H 0.05 0.73 7.55 -51.93 -0.39 0.34 16 36 H 0.08 1.62 7.46 -52.48 -0.39 1.22 16 37 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -27.55 300.67 -10.11 -37.66 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.49 Total: 8.98 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -3.51 Total: -27.00 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.62 Total: -37.93 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.55 -10.11 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399224150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.639 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds