Wall clock time and date at job start Mon Mar 30 2020 03:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86807 * 120.00315 * 2 1 4 4 H 1.48500 * 109.47032 * 270.00395 * 3 2 1 5 5 H 1.48503 * 109.46870 * 30.00030 * 3 2 1 6 6 H 1.48496 * 109.47397 * 150.00352 * 3 2 1 7 7 C 1.39948 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00048 * 161.78120 * 7 2 1 9 9 C 1.41394 * 119.99769 * 341.50285 * 7 2 1 10 10 C 1.40711 * 120.24636 * 335.85310 * 9 7 2 11 11 C 1.37618 * 119.74512 * 179.76524 * 10 9 7 12 12 C 1.38633 * 120.24757 * 0.51175 * 11 10 9 13 13 C 1.50700 * 119.75052 * 179.71370 * 12 11 10 14 14 N 1.46897 * 109.47381 * 270.02720 * 13 12 11 15 15 C 1.47841 * 110.99883 * 290.84175 * 14 13 12 16 16 C 1.54912 * 104.79698 * 213.63785 * 15 14 13 17 17 C 1.55144 * 101.65076 * 37.07100 * 16 15 14 18 18 H 1.08993 * 110.70654 * 82.73202 * 17 16 15 19 19 N 1.46899 * 110.85323 * 205.89677 * 17 16 15 20 20 C 1.47447 * 110.99816 * 170.00033 * 14 13 12 21 21 C 1.38631 * 120.49950 * 359.74417 * 12 11 10 22 22 C 1.37611 * 120.25417 * 359.97438 * 21 12 11 23 23 H 0.97004 * 119.99851 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.12622 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.87457 * 180.27255 * 11 10 9 26 26 H 1.09002 * 109.46854 * 30.02990 * 13 12 11 27 27 H 1.09001 * 109.47073 * 150.02009 * 13 12 11 28 28 H 1.09005 * 110.37528 * 332.46525 * 15 14 13 29 29 H 1.09001 * 110.37680 * 94.80952 * 15 14 13 30 30 H 1.08998 * 110.99262 * 278.97785 * 16 15 14 31 31 H 1.08998 * 111.02341 * 155.17015 * 16 15 14 32 32 H 1.00899 * 111.00268 * 293.68819 * 19 17 16 33 33 H 1.00896 * 111.00202 * 57.63376 * 19 17 16 34 34 H 1.09005 * 109.88226 * 242.66170 * 20 14 13 35 35 H 1.08999 * 109.88848 * 3.68402 * 20 14 13 36 36 H 1.08005 * 119.87508 * 180.02562 * 21 12 11 37 37 H 1.08004 * 120.13629 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4402 0.6999 7 6 2.0079 -1.2120 -0.0005 8 1 3.0473 -1.2353 -0.2930 9 6 1.3557 -2.4050 0.3874 10 6 0.2296 -2.3555 1.2297 11 6 -0.4002 -3.5227 1.5969 12 6 0.0772 -4.7447 1.1489 13 6 -0.6173 -6.0163 1.5632 14 7 -0.0218 -6.5158 2.8097 15 6 1.3552 -7.0029 2.5810 16 6 1.5242 -8.1878 3.5645 17 6 0.1150 -8.8354 3.5199 18 1 0.0228 -9.4988 2.6601 19 7 -0.1668 -9.5607 4.7659 20 6 -0.8224 -7.6184 3.3731 21 6 1.1890 -4.8057 0.3230 22 6 1.8312 -3.6510 -0.0616 23 1 -0.4850 0.8401 0.0004 24 1 -0.1416 -1.4048 1.5832 25 1 -1.2673 -3.4868 2.2398 26 1 -1.6771 -5.8165 1.7214 27 1 -0.5018 -6.7652 0.7797 28 1 1.4711 -7.3442 1.5523 29 1 2.0776 -6.2180 2.8049 30 1 1.7588 -7.8321 4.5677 31 1 2.2850 -8.8838 3.2112 32 1 0.4438 -10.3576 4.8665 33 1 -0.0965 -8.9483 5.5646 34 1 -1.2133 -7.3314 4.3493 35 1 -1.6455 -7.8601 2.7006 36 1 1.5521 -5.7631 -0.0205 37 1 2.6975 -3.7008 -0.7047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399224150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:23 Heat of formation + Delta-G solvation = -1.093319 kcal Electronic energy + Delta-G solvation = -17337.025665 eV Core-core repulsion = 14691.298387 eV Total energy + Delta-G solvation = -2645.727278 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38839 -39.08965 -35.98341 -34.80039 -32.32890 -31.14568 -30.74148 -28.81019 -27.23039 -25.04413 -22.92113 -22.27284 -21.56775 -21.27315 -19.20844 -17.68311 -17.14656 -16.74603 -16.12012 -15.82395 -15.60803 -15.40017 -14.65318 -14.40198 -14.22209 -13.83734 -13.76761 -13.58784 -13.16036 -13.03731 -12.80642 -12.65922 -12.55240 -12.30210 -12.00706 -11.98687 -11.76613 -11.35752 -11.22275 -10.98675 -9.61641 -9.33752 -9.29376 -9.07853 -8.63511 -6.31937 0.96313 1.16389 1.37449 1.48216 1.54191 2.20841 2.68555 3.18626 3.51953 3.72128 3.84499 3.88613 4.14029 4.27758 4.29820 4.39646 4.52152 4.55943 4.59969 4.77579 4.80981 4.91301 4.98588 5.06007 5.10976 5.16916 5.22639 5.38993 5.48071 5.72132 5.93773 6.08247 6.11985 6.17798 6.26172 6.31722 6.40329 6.60303 6.72205 6.95430 7.05816 8.33830 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.052807 B = 0.004395 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.102210 B = 6369.466449 C = 6508.885091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.192 4.192 11 C -0.088 4.088 12 C -0.195 4.195 13 C 0.121 3.879 14 N -0.539 5.539 15 C 0.050 3.950 16 C -0.155 4.155 17 C 0.081 3.919 18 H 0.089 0.911 19 N -0.839 5.839 20 C 0.046 3.954 21 C -0.081 4.081 22 C -0.245 4.245 23 H 0.288 0.712 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.352 0.648 33 H 0.347 0.653 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 -12.799 6.132 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.212 4.212 11 C -0.106 4.106 12 C -0.196 4.196 13 C -0.006 4.006 14 N -0.264 5.264 15 C -0.078 4.078 16 C -0.195 4.195 17 C -0.032 4.032 18 H 0.107 0.893 19 N -0.370 5.370 20 C -0.082 4.082 21 C -0.099 4.099 22 C -0.264 4.264 23 H 0.098 0.902 24 H 0.115 0.885 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.320 -12.385 6.163 13.837 hybrid contribution 1.246 0.755 -0.573 1.566 sum 0.927 -11.630 5.590 12.937 Atomic orbital electron populations 1.69885 1.09047 1.30509 1.35713 1.26757 0.95468 1.04507 0.91173 0.85231 0.79112 0.75971 0.79542 1.18564 1.18994 1.18381 1.19829 0.98494 0.92793 1.42295 0.90832 1.17948 0.91898 0.93064 0.89333 1.21251 1.00445 0.97019 1.02435 1.20719 0.98652 0.92594 0.98666 1.19270 1.00573 0.93861 1.05917 1.20847 0.97235 0.92917 0.89587 1.63594 1.02495 1.33044 1.27221 1.22869 0.90544 0.96286 0.98130 1.23505 0.99036 0.97050 0.99904 1.22565 0.92160 0.94295 0.94187 0.89279 1.58778 1.61273 1.13091 1.03810 1.22847 0.95778 0.89011 1.00574 1.20625 0.95252 0.96536 0.97532 1.21139 1.04446 0.93221 1.07601 0.90174 0.88462 0.88156 0.91035 0.94390 0.93684 0.92619 0.90854 0.89410 0.83376 0.83948 0.90640 0.92358 0.87149 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.42 10.98 21.83 0.24 -44.18 16 2 C 0.04 1.85 5.13 85.26 0.44 2.29 16 3 Si 0.98 39.12 29.60 68.60 2.03 41.15 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.16 9.05 23.46 0.21 -27.95 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.08 4.47 5.58 -21.29 -0.12 4.35 16 10 C -0.19 -10.51 8.70 22.73 0.20 -10.31 16 11 C -0.09 -4.21 9.67 22.22 0.21 -4.00 16 12 C -0.19 -8.38 5.12 -19.68 -0.10 -8.48 16 13 C 0.12 4.13 4.71 85.56 0.40 4.54 16 14 N -0.54 -16.64 5.15 -890.08 -4.59 -21.23 16 15 C 0.05 1.41 5.60 86.78 0.49 1.90 16 16 C -0.15 -3.16 6.75 31.98 0.22 -2.95 16 17 C 0.08 1.58 4.09 46.10 0.19 1.77 16 18 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 19 N -0.84 -13.40 9.34 -163.80 -1.53 -14.93 16 20 C 0.05 1.12 6.60 86.65 0.57 1.70 16 21 C -0.08 -3.57 8.88 22.22 0.20 -3.37 16 22 C -0.24 -12.35 9.80 22.73 0.22 -12.13 16 23 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 24 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 25 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 26 H 0.07 2.35 7.97 -2.39 -0.02 2.33 16 27 H 0.04 1.20 7.79 -2.39 -0.02 1.18 16 28 H 0.04 1.27 6.97 -2.38 -0.02 1.25 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.35 4.25 9.08 -89.69 -0.81 3.43 16 33 H 0.35 5.21 8.86 -89.70 -0.79 4.41 16 34 H 0.08 1.87 7.92 -2.38 -0.02 1.85 16 35 H 0.06 1.40 7.55 -2.39 -0.02 1.38 16 36 H 0.11 4.18 7.46 -2.91 -0.02 4.15 16 37 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -60.62 300.67 -1.25 -61.87 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.54 Total: 29.96 kcal Atomic # 6 Polarization: -55.78 SS G_CDS: 3.13 Total: -52.65 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -5.88 Total: -80.33 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -60.62 -1.25 -61.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399224150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.778 kcal (2) G-P(sol) polarization free energy of solvation -60.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds