Wall clock time and date at job start Mon Mar 30 2020 03:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48499 * 109.46997 * 275.40590 * 3 2 1 5 5 H 1.48496 * 109.47180 * 35.40238 * 3 2 1 6 6 H 1.48498 * 109.47224 * 155.40657 * 3 2 1 7 7 C 1.39943 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00124 * 341.70844 * 7 2 1 9 9 C 1.41397 * 119.99809 * 161.69767 * 7 2 1 10 10 C 1.40714 * 120.24750 * 330.28168 * 9 7 2 11 11 C 1.37617 * 119.75006 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.24100 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.74660 * 179.97438 * 12 11 10 14 14 N 1.46893 * 109.47340 * 269.98152 * 13 12 11 15 15 C 1.47902 * 111.00120 * 69.87209 * 14 13 12 16 16 C 1.53996 * 107.05985 * 214.16036 * 15 14 13 17 17 C 1.54598 * 105.13847 * 1.21899 * 16 15 14 18 18 H 1.09001 * 110.72561 * 263.42589 * 17 16 15 19 19 N 1.46901 * 110.72108 * 140.31851 * 17 16 15 20 20 C 1.48538 * 110.99998 * 312.47948 * 14 13 12 21 21 C 1.38627 * 120.50796 * 359.96268 * 12 11 10 22 22 C 1.37616 * 120.24697 * 0.03837 * 21 12 11 23 23 H 0.96997 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.12446 * 359.69127 * 10 9 7 25 25 H 1.07988 * 119.88140 * 179.97438 * 11 10 9 26 26 H 1.09004 * 109.46827 * 29.97880 * 13 12 11 27 27 H 1.08996 * 109.46997 * 149.97475 * 13 12 11 28 28 H 1.08997 * 109.91869 * 333.50828 * 15 14 13 29 29 H 1.09001 * 109.91971 * 94.60829 * 15 14 13 30 30 H 1.08995 * 110.31286 * 120.14091 * 16 15 14 31 31 H 1.09000 * 110.30607 * 242.30994 * 16 15 14 32 32 H 1.00899 * 110.99858 * 61.45470 * 19 17 16 33 33 H 1.00901 * 111.00118 * 185.41482 * 19 17 16 34 34 H 1.09004 * 110.66048 * 278.15620 * 20 14 13 35 35 H 1.08994 * 110.66661 * 41.27802 * 20 14 13 36 36 H 1.08000 * 119.88047 * 180.02562 * 21 12 11 37 37 H 1.08007 * 120.12987 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5015 2.6170 0.8111 6 1 3.5923 1.4099 0.5827 7 6 2.0080 -1.2119 0.0005 8 1 1.5090 -2.1235 0.2945 9 6 3.3683 -1.2430 -0.3840 10 6 3.8632 -0.3112 -1.3151 11 6 5.1891 -0.3505 -1.6816 12 6 6.0360 -1.3038 -1.1376 13 6 7.4859 -1.3370 -1.5474 14 7 7.6451 -2.2153 -2.7140 15 6 7.0363 -1.6114 -3.9191 16 6 6.4657 -2.7658 -4.7638 17 6 6.7611 -4.0463 -3.9494 18 1 7.6748 -4.5251 -4.3015 19 7 5.6281 -4.9788 -4.0181 20 6 6.9404 -3.5066 -2.5082 21 6 5.5595 -2.2265 -0.2193 22 6 4.2373 -2.2060 0.1618 23 1 -0.4850 0.8400 -0.0004 24 1 3.2040 0.4290 -1.7438 25 1 5.5710 0.3633 -2.3963 26 1 7.8142 -0.3296 -1.8036 27 1 8.0881 -1.7165 -0.7220 28 1 6.2348 -0.9319 -3.6295 29 1 7.7939 -1.0712 -4.4869 30 1 5.3911 -2.6417 -4.8972 31 1 6.9654 -2.8093 -5.7315 32 1 5.4560 -5.2693 -4.9689 33 1 5.7789 -5.7758 -3.4180 34 1 7.5510 -4.1878 -1.9155 35 1 5.9721 -3.3452 -2.0345 36 1 6.2283 -2.9645 0.1984 37 1 3.8680 -2.9261 0.8770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399224151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:26 Heat of formation + Delta-G solvation = 23.306312 kcal Electronic energy + Delta-G solvation = -18027.364818 eV Core-core repulsion = 15382.695587 eV Total energy + Delta-G solvation = -2644.669231 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36790 -37.35009 -34.39496 -33.30158 -31.16807 -29.89352 -29.30988 -27.50748 -25.80650 -23.43134 -21.68346 -20.74084 -20.05286 -19.72304 -17.43179 -16.22774 -15.77328 -15.27979 -15.16527 -14.43780 -14.13599 -13.94367 -13.60605 -13.34672 -12.93148 -12.50169 -12.35225 -12.05791 -11.66939 -11.24133 -11.10340 -11.03924 -10.78980 -10.76363 -10.55305 -10.50907 -10.20343 -9.96546 -9.56472 -9.14029 -8.60013 -7.97801 -7.69222 -7.50891 -6.95941 -4.48498 2.54422 2.67811 3.10063 3.20750 3.31351 3.97810 4.27495 4.48785 4.79747 4.92686 5.00233 5.29051 5.41856 5.59473 5.66940 5.83673 5.85177 6.00872 6.05808 6.09079 6.13892 6.23171 6.31612 6.40337 6.47984 6.57361 6.79403 6.89373 7.11417 7.17370 7.34259 7.35959 7.43477 7.52402 7.58447 7.79382 7.87581 8.12404 8.35255 8.65694 8.79970 10.06529 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029121 B = 0.006778 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.266875 B = 4130.132507 C = 4352.152005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.084 3.916 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.447 4.447 8 H 0.090 0.910 9 C 0.097 3.903 10 C -0.238 4.238 11 C -0.065 4.065 12 C -0.250 4.250 13 C 0.103 3.897 14 N -0.514 5.514 15 C 0.029 3.971 16 C -0.123 4.123 17 C 0.085 3.915 18 H 0.040 0.960 19 N -0.839 5.839 20 C 0.030 3.970 21 C -0.067 4.067 22 C -0.208 4.208 23 H 0.285 0.715 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.338 0.662 33 H 0.340 0.660 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.000 -3.575 -6.056 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.476 4.476 8 H 0.108 0.892 9 C 0.094 3.906 10 C -0.257 4.257 11 C -0.084 4.084 12 C -0.252 4.252 13 C -0.024 4.024 14 N -0.237 5.237 15 C -0.099 4.099 16 C -0.161 4.161 17 C -0.027 4.027 18 H 0.058 0.942 19 N -0.369 5.369 20 C -0.098 4.098 21 C -0.086 4.086 22 C -0.228 4.228 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.879 -2.944 -5.818 12.683 hybrid contribution -0.056 0.221 -0.288 0.368 sum 10.823 -2.723 -6.106 12.721 Atomic orbital electron populations 1.69703 1.08110 1.30235 1.35178 1.26165 0.94695 1.01765 0.90843 0.86295 0.81298 0.79739 0.78750 1.19757 1.21889 1.16763 1.19521 0.93301 0.96086 1.38665 0.89200 1.17724 0.92890 0.90699 0.89253 1.20988 0.95550 1.04936 1.04268 1.20445 0.93718 0.96617 0.97585 1.19593 0.95911 1.02727 1.06992 1.20962 0.92993 0.96241 0.92244 1.65168 1.51123 1.03829 1.03538 1.22870 0.98152 0.97035 0.91849 1.22402 1.01849 0.94119 0.97762 1.22213 0.90959 0.92937 0.96577 0.94201 1.58642 1.43498 1.21011 1.13789 1.23411 0.99962 0.91022 0.95400 1.20464 0.95279 0.96712 0.96117 1.21009 0.93119 1.04064 1.04572 0.90475 0.88407 0.89177 0.91645 0.91324 0.92011 0.91429 0.90424 0.92140 0.84952 0.84718 0.91584 0.89388 0.89064 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.75 13.93 55.55 0.77 -20.97 16 2 C 0.08 2.23 5.40 -17.34 -0.09 2.14 16 3 Si 0.91 21.09 24.52 -169.99 -4.17 16.93 16 4 H -0.27 -6.11 6.71 56.52 0.38 -5.73 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.24 -5.80 6.86 56.52 0.39 -5.41 16 7 C -0.45 -12.24 9.57 -37.74 -0.36 -12.60 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 C 0.10 2.49 5.11 -106.82 -0.55 1.94 16 10 C -0.24 -5.78 7.16 -38.87 -0.28 -6.06 16 11 C -0.06 -1.39 8.15 -39.66 -0.32 -1.72 16 12 C -0.25 -4.98 3.98 -104.33 -0.42 -5.39 16 13 C 0.10 1.72 5.69 -4.98 -0.03 1.70 16 14 N -0.51 -8.16 5.54 -231.89 -1.28 -9.45 16 15 C 0.03 0.45 6.46 -2.75 -0.02 0.43 16 16 C -0.12 -1.72 6.66 -25.37 -0.17 -1.89 16 17 C 0.08 1.16 4.19 -65.85 -0.28 0.89 16 18 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 19 N -0.84 -10.71 9.28 -3.09 -0.03 -10.74 16 20 C 0.03 0.48 5.73 -1.90 -0.01 0.46 16 21 C -0.07 -1.38 7.45 -39.66 -0.30 -1.68 16 22 C -0.21 -4.85 9.80 -38.87 -0.38 -5.23 16 23 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 24 H 0.10 2.39 4.75 -52.48 -0.25 2.15 16 25 H 0.09 1.74 7.16 -52.49 -0.38 1.37 16 26 H 0.07 1.04 8.02 -51.93 -0.42 0.63 16 27 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 28 H 0.06 1.05 4.84 -51.93 -0.25 0.80 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.34 3.59 9.07 -39.29 -0.36 3.23 16 33 H 0.34 3.81 9.07 -39.29 -0.36 3.46 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.66 4.85 -51.93 -0.25 1.40 16 36 H 0.09 1.67 8.05 -52.49 -0.42 1.25 16 37 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 LS Contribution 288.21 15.07 4.34 4.34 Total: -1.00 -27.64 288.21 -8.78 -36.42 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.22 Total: 10.47 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -3.20 Total: -27.00 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -0.54 Total: -41.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.17 Total: 16.93 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.64 -8.78 -36.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399224151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.730 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds