Wall clock time and date at job start Mon Mar 30 2020 03:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48499 * 109.46997 * 275.40590 * 3 2 1 5 5 H 1.48496 * 109.47180 * 35.40238 * 3 2 1 6 6 H 1.48498 * 109.47224 * 155.40657 * 3 2 1 7 7 C 1.39943 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00124 * 341.70844 * 7 2 1 9 9 C 1.41397 * 119.99809 * 161.69767 * 7 2 1 10 10 C 1.40714 * 120.24750 * 330.28168 * 9 7 2 11 11 C 1.37617 * 119.75006 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.24100 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.74660 * 179.97438 * 12 11 10 14 14 N 1.46893 * 109.47340 * 269.98152 * 13 12 11 15 15 C 1.47902 * 111.00120 * 69.87209 * 14 13 12 16 16 C 1.53996 * 107.05985 * 214.16036 * 15 14 13 17 17 C 1.54598 * 105.13847 * 1.21899 * 16 15 14 18 18 H 1.09001 * 110.72561 * 263.42589 * 17 16 15 19 19 N 1.46901 * 110.72108 * 140.31851 * 17 16 15 20 20 C 1.48538 * 110.99998 * 312.47948 * 14 13 12 21 21 C 1.38627 * 120.50796 * 359.96268 * 12 11 10 22 22 C 1.37616 * 120.24697 * 0.03837 * 21 12 11 23 23 H 0.96997 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.12446 * 359.69127 * 10 9 7 25 25 H 1.07988 * 119.88140 * 179.97438 * 11 10 9 26 26 H 1.09004 * 109.46827 * 29.97880 * 13 12 11 27 27 H 1.08996 * 109.46997 * 149.97475 * 13 12 11 28 28 H 1.08997 * 109.91869 * 333.50828 * 15 14 13 29 29 H 1.09001 * 109.91971 * 94.60829 * 15 14 13 30 30 H 1.08995 * 110.31286 * 120.14091 * 16 15 14 31 31 H 1.09000 * 110.30607 * 242.30994 * 16 15 14 32 32 H 1.00899 * 110.99858 * 61.45470 * 19 17 16 33 33 H 1.00901 * 111.00118 * 185.41482 * 19 17 16 34 34 H 1.09004 * 110.66048 * 278.15620 * 20 14 13 35 35 H 1.08994 * 110.66661 * 41.27802 * 20 14 13 36 36 H 1.08000 * 119.88047 * 180.02562 * 21 12 11 37 37 H 1.08007 * 120.12987 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5015 2.6170 0.8111 6 1 3.5923 1.4099 0.5827 7 6 2.0080 -1.2119 0.0005 8 1 1.5090 -2.1235 0.2945 9 6 3.3683 -1.2430 -0.3840 10 6 3.8632 -0.3112 -1.3151 11 6 5.1891 -0.3505 -1.6816 12 6 6.0360 -1.3038 -1.1376 13 6 7.4859 -1.3370 -1.5474 14 7 7.6451 -2.2153 -2.7140 15 6 7.0363 -1.6114 -3.9191 16 6 6.4657 -2.7658 -4.7638 17 6 6.7611 -4.0463 -3.9494 18 1 7.6748 -4.5251 -4.3015 19 7 5.6281 -4.9788 -4.0181 20 6 6.9404 -3.5066 -2.5082 21 6 5.5595 -2.2265 -0.2193 22 6 4.2373 -2.2060 0.1618 23 1 -0.4850 0.8400 -0.0004 24 1 3.2040 0.4290 -1.7438 25 1 5.5710 0.3633 -2.3963 26 1 7.8142 -0.3296 -1.8036 27 1 8.0881 -1.7165 -0.7220 28 1 6.2348 -0.9319 -3.6295 29 1 7.7939 -1.0712 -4.4869 30 1 5.3911 -2.6417 -4.8972 31 1 6.9654 -2.8093 -5.7315 32 1 5.4560 -5.2693 -4.9689 33 1 5.7789 -5.7758 -3.4180 34 1 7.5510 -4.1878 -1.9155 35 1 5.9721 -3.3452 -2.0345 36 1 6.2283 -2.9645 0.1984 37 1 3.8680 -2.9261 0.8770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399224151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:25 Heat of formation + Delta-G solvation = 3.129585 kcal Electronic energy + Delta-G solvation = -18028.239747 eV Core-core repulsion = 15382.695587 eV Total energy + Delta-G solvation = -2645.544160 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78586 -38.93327 -35.93269 -34.89972 -32.69881 -31.64849 -30.75413 -28.80544 -27.36729 -24.97585 -23.43213 -22.27797 -21.32842 -21.12525 -19.37325 -17.61471 -17.27352 -16.71652 -16.27204 -15.95850 -15.76272 -15.61148 -15.00299 -14.78425 -14.58409 -14.15393 -13.86264 -13.79104 -13.23754 -12.73727 -12.64139 -12.47123 -12.30590 -12.12203 -12.05518 -11.90042 -11.74857 -11.63851 -11.40993 -11.00819 -9.60463 -9.49927 -9.34162 -9.26735 -8.92102 -6.50915 0.74007 0.85956 1.23081 1.37284 1.45952 2.09966 2.55025 3.14652 3.49514 3.70141 3.81336 3.88826 4.17805 4.21558 4.28334 4.39022 4.48599 4.55006 4.71440 4.73282 4.87433 4.97116 5.00905 5.03754 5.05080 5.10594 5.20913 5.26710 5.31000 5.59155 5.73671 5.83596 5.92015 6.10059 6.12364 6.24792 6.34477 6.40475 6.64325 6.73294 6.82633 8.16817 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029121 B = 0.006778 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.266875 B = 4130.132507 C = 4352.152005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.048 3.952 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.488 4.488 8 H 0.053 0.947 9 C 0.076 3.924 10 C -0.251 4.251 11 C -0.070 4.070 12 C -0.222 4.222 13 C 0.104 3.896 14 N -0.506 5.506 15 C 0.025 3.975 16 C -0.122 4.122 17 C 0.090 3.910 18 H 0.058 0.942 19 N -0.854 5.854 20 C 0.027 3.973 21 C -0.061 4.061 22 C -0.222 4.222 23 H 0.293 0.707 24 H 0.092 0.908 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.350 0.650 33 H 0.349 0.651 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.541 -3.253 -7.302 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.167 4.167 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.518 4.518 8 H 0.071 0.929 9 C 0.073 3.927 10 C -0.270 4.270 11 C -0.089 4.089 12 C -0.225 4.225 13 C -0.024 4.024 14 N -0.228 5.228 15 C -0.103 4.103 16 C -0.161 4.161 17 C -0.022 4.022 18 H 0.076 0.924 19 N -0.387 5.387 20 C -0.101 4.101 21 C -0.080 4.080 22 C -0.241 4.241 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.135 0.865 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.139 0.861 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.422 -2.639 -7.075 16.279 hybrid contribution -0.923 -0.044 0.019 0.924 sum 13.499 -2.683 -7.056 15.466 Atomic orbital electron populations 1.69731 1.09151 1.31384 1.37522 1.26813 0.95319 1.04173 0.90355 0.85461 0.79592 0.76573 0.79289 1.18624 1.20294 1.17756 1.19491 0.94791 0.95537 1.42004 0.92855 1.17853 0.92504 0.92153 0.90145 1.21077 0.96884 1.04740 1.04292 1.20781 0.92756 0.97514 0.97835 1.20119 0.97740 1.00343 1.04265 1.21078 0.90361 0.97682 0.93266 1.65211 1.50754 1.03599 1.03222 1.22973 0.98191 0.97216 0.91963 1.22405 1.00769 0.93926 0.98957 1.22169 0.91893 0.93041 0.95083 0.92447 1.58607 1.43453 1.21592 1.15004 1.23417 0.98404 0.91484 0.96824 1.20775 0.94405 0.97154 0.95679 1.21194 0.94313 1.03756 1.04886 0.89645 0.89055 0.86524 0.90078 0.89662 0.93961 0.89292 0.92493 0.89657 0.83585 0.83799 0.90271 0.92635 0.86057 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.01 13.93 21.83 0.30 -47.70 16 2 C 0.05 2.63 5.40 85.26 0.46 3.09 16 3 Si 0.97 44.15 24.52 68.60 1.68 45.83 16 4 H -0.26 -11.31 6.71 99.48 0.67 -10.64 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.25 -11.81 6.86 99.48 0.68 -11.13 16 7 C -0.49 -28.35 9.57 23.46 0.22 -28.13 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 9 C 0.08 3.98 5.11 -21.29 -0.11 3.87 16 10 C -0.25 -12.10 7.16 22.73 0.16 -11.94 16 11 C -0.07 -2.86 8.15 22.22 0.18 -2.68 16 12 C -0.22 -8.20 3.98 -19.67 -0.08 -8.27 16 13 C 0.10 3.01 5.69 85.56 0.49 3.50 16 14 N -0.51 -13.93 5.54 -887.56 -4.91 -18.85 16 15 C 0.02 0.66 6.46 86.45 0.56 1.22 16 16 C -0.12 -3.04 6.66 31.47 0.21 -2.83 16 17 C 0.09 2.18 4.19 46.12 0.19 2.37 16 18 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 19 N -0.85 -19.99 9.28 -163.69 -1.52 -21.51 16 20 C 0.03 0.76 5.73 86.65 0.50 1.26 16 21 C -0.06 -2.41 7.45 22.22 0.17 -2.25 16 22 C -0.22 -10.42 9.80 22.73 0.22 -10.20 16 23 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 24 H 0.09 4.47 4.75 -2.91 -0.01 4.46 16 25 H 0.12 4.13 7.16 -2.92 -0.02 4.11 16 26 H 0.08 2.17 8.02 -2.38 -0.02 2.15 16 27 H 0.09 2.26 8.08 -2.39 -0.02 2.24 16 28 H 0.04 1.30 4.84 -2.39 -0.01 1.29 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.66 8.05 -2.39 -0.02 1.64 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.35 6.68 9.07 -89.69 -0.81 5.86 16 33 H 0.35 7.09 9.07 -89.69 -0.81 6.28 16 34 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.06 1.95 4.85 -2.39 -0.01 1.94 16 36 H 0.12 4.03 8.05 -2.91 -0.02 4.01 16 37 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -61.48 288.21 -1.87 -63.36 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.60 Total: 29.86 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 3.17 Total: -51.00 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -6.13 Total: -88.06 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.68 Total: 45.83 kcal Total: -61.48 -1.87 -63.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399224151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.487 kcal (2) G-P(sol) polarization free energy of solvation -61.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds