Wall clock time and date at job start Mon Mar 30 2020 04:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46904 * 110.99741 * 2 1 4 4 C 1.50695 * 109.46849 * 66.04641 * 3 2 1 5 5 C 1.38635 * 119.75042 * 269.72122 * 4 3 2 6 6 C 1.37621 * 120.24483 * 179.72704 * 5 4 3 7 7 C 1.40711 * 119.74518 * 0.56842 * 6 5 4 8 8 C 1.41399 * 120.24130 * 179.68150 * 7 6 5 9 9 H 1.07998 * 119.99830 * 205.29377 * 8 7 6 10 10 C 1.39944 * 120.00156 * 25.30178 * 8 7 6 11 11 N 1.30834 * 119.99753 * 17.10558 * 10 8 7 12 12 Si 1.86799 * 120.00240 * 197.10559 * 10 8 7 13 13 H 1.48498 * 109.47132 * 59.99945 * 12 10 8 14 14 H 1.48503 * 109.47155 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47041 * 299.99747 * 12 10 8 16 16 C 1.40713 * 119.51315 * 359.70827 * 7 6 5 17 17 C 1.37607 * 119.74651 * 359.97438 * 16 7 6 18 18 C 1.46901 * 111.00081 * 236.04720 * 2 1 3 19 19 C 1.53512 * 114.17250 * 192.85790 * 18 2 1 20 20 N 1.47481 * 87.93271 * 139.67134 * 19 18 2 21 21 C 1.47487 * 87.83465 * 332.99021 * 20 19 18 22 22 H 1.09001 * 109.46838 * 177.70086 * 1 2 3 23 23 H 1.08998 * 109.47144 * 297.70893 * 1 2 3 24 24 H 1.09001 * 109.46973 * 57.70595 * 1 2 3 25 25 H 1.09007 * 109.46839 * 186.04649 * 3 2 1 26 26 H 1.08997 * 109.46957 * 306.04451 * 3 2 1 27 27 H 1.07993 * 119.87512 * 359.97438 * 5 4 3 28 28 H 1.08004 * 120.12597 * 180.28164 * 6 5 4 29 29 H 0.97005 * 119.99721 * 180.02562 * 11 10 8 30 30 H 1.08001 * 120.12782 * 179.97438 * 16 7 6 31 31 H 1.08004 * 119.87892 * 179.97438 * 17 16 7 32 32 H 1.09003 * 113.38369 * 59.77607 * 18 2 1 33 33 H 1.09003 * 113.47593 * 24.89990 * 19 18 2 34 34 H 1.09002 * 113.52871 * 254.45058 * 19 18 2 35 35 H 1.00899 * 110.99807 * 84.68238 * 20 19 18 36 36 H 1.08996 * 113.47522 * 141.78123 * 21 20 19 37 37 H 1.08998 * 113.47587 * 272.24483 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 6 0.4490 2.7545 1.4007 6 6 0.1088 3.3707 2.5833 7 6 0.9775 3.2907 3.6873 8 6 0.6416 3.9255 4.9053 9 1 1.4203 4.2231 5.5919 10 6 -0.7000 4.1679 5.2213 11 7 -1.6478 3.5310 4.5828 12 14 -1.1375 5.4008 6.5547 13 1 -0.6087 6.7383 6.1849 14 1 -2.6140 5.4745 6.6956 15 1 -0.5377 4.9702 7.8431 16 6 2.1833 2.5748 3.5702 17 6 2.5000 1.9610 2.3800 18 6 1.9955 -0.7660 -1.1376 19 6 3.4955 -1.0789 -1.0444 20 7 3.1940 -2.4213 -1.5757 21 6 1.8450 -2.2870 -0.9948 22 1 -0.3633 -1.0269 -0.0412 23 1 -0.3633 0.4778 0.9098 24 1 -0.3633 0.5491 -0.8687 25 1 3.0798 1.3445 -0.1083 26 1 1.5611 1.9273 -0.8309 27 1 -0.2137 2.8189 0.5504 28 1 -0.8192 3.9175 2.6623 29 1 -2.5778 3.6993 4.8015 30 1 2.8575 2.5073 4.4112 31 1 3.4251 1.4113 2.2876 32 1 1.6804 -0.3752 -2.1052 33 1 3.8738 -1.0913 -0.0222 34 1 4.1085 -0.4747 -1.7133 35 1 3.1561 -2.4110 -2.5840 36 1 1.0584 -2.7064 -1.6220 37 1 1.7829 -2.6218 0.0407 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399228264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:21 Heat of formation + Delta-G solvation = 59.188050 kcal Electronic energy + Delta-G solvation = -17424.019409 eV Core-core repulsion = 14780.906127 eV Total energy + Delta-G solvation = -2643.113282 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.92667 -37.75095 -35.48990 -33.50360 -30.30072 -29.31044 -27.39493 -26.83534 -25.59769 -24.31715 -22.26166 -20.91578 -20.04102 -19.67390 -17.27770 -16.54203 -15.77532 -15.28879 -14.82111 -14.66016 -13.98678 -13.44253 -13.39104 -13.11993 -12.52072 -12.48215 -12.31693 -12.12851 -11.91723 -11.57216 -11.29286 -11.15353 -11.01598 -10.94912 -10.62128 -10.39901 -10.24307 -9.58269 -9.36857 -9.12803 -8.77189 -8.02559 -7.41921 -7.26529 -6.74658 -4.33937 2.75397 3.06371 3.08866 3.10151 3.19170 3.93645 4.11704 4.29467 4.37427 4.71340 4.90229 5.36286 5.48797 5.56082 5.64419 5.71473 5.72977 5.78908 5.88680 5.94347 6.04859 6.15186 6.26623 6.38041 6.41876 6.46709 6.95575 7.08864 7.15743 7.25443 7.38302 7.42157 7.46903 7.63455 7.89877 8.06601 8.15152 8.32012 8.65219 8.91042 8.99171 10.19911 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.050854 B = 0.004589 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.465835 B = 6100.370314 C = 6329.821386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.519 5.519 3 C 0.120 3.880 4 C -0.208 4.208 5 C -0.094 4.094 6 C -0.165 4.165 7 C 0.113 3.887 8 C -0.465 4.465 9 H 0.076 0.924 10 C 0.077 3.923 11 N -0.794 5.794 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.228 4.228 17 C -0.069 4.069 18 C 0.002 3.998 19 C 0.026 3.974 20 N -0.651 5.651 21 C 0.027 3.973 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.015 0.985 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.280 0.720 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.331 0.669 36 H 0.063 0.937 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 -5.023 -9.079 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.243 5.243 3 C -0.006 4.006 4 C -0.209 4.209 5 C -0.113 4.113 6 C -0.185 4.185 7 C 0.110 3.890 8 C -0.494 4.494 9 H 0.095 0.905 10 C -0.141 4.141 11 N -0.420 5.420 12 Si 0.732 3.268 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.247 4.247 17 C -0.088 4.088 18 C -0.108 4.108 19 C -0.104 4.104 20 N -0.277 5.277 21 C -0.103 4.103 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.034 0.966 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.081 0.919 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.135 -5.901 -8.206 10.583 hybrid contribution -1.262 1.648 -0.714 2.195 sum 1.873 -4.253 -8.920 10.058 Atomic orbital electron populations 1.22348 0.87467 1.00697 1.01592 1.62470 1.08018 1.14903 1.38934 1.20720 0.98353 0.86198 0.95348 1.18822 0.98450 1.08518 0.95145 1.20509 0.95198 0.98821 0.96783 1.21261 1.01532 1.03882 0.91781 1.17609 0.90481 0.88354 0.92516 1.19570 0.92238 1.34185 1.03425 0.90545 1.25893 0.96302 0.94846 0.97057 1.69825 1.01405 1.33399 1.37360 0.86386 0.77731 0.81530 0.81174 1.18875 1.20376 1.19014 1.20975 1.00822 1.05977 0.96947 1.20315 0.97260 0.98124 0.93096 1.24740 0.96928 0.95481 0.93681 1.23610 0.94801 0.89505 1.02454 1.65635 1.18915 1.30031 1.13140 1.23610 0.91224 0.93299 1.02199 0.92482 0.89719 0.96611 0.91781 0.96060 0.90029 0.86644 0.90904 0.89116 0.89523 0.92316 0.87461 0.91754 0.85555 0.91887 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.03 60.07 0.54 0.98 16 2 N -0.52 -8.36 4.71 -235.99 -1.11 -9.47 16 3 C 0.12 2.10 5.05 -4.98 -0.03 2.07 16 4 C -0.21 -4.44 4.90 -104.33 -0.51 -4.95 16 5 C -0.09 -2.15 8.00 -39.66 -0.32 -2.47 16 6 C -0.17 -4.25 8.69 -38.87 -0.34 -4.59 16 7 C 0.11 3.01 5.57 -106.83 -0.59 2.41 16 8 C -0.46 -12.37 9.05 -37.74 -0.34 -12.71 16 9 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 10 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 11 N -0.79 -20.53 10.97 55.55 0.61 -19.92 16 12 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 13 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 14 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 16 C -0.23 -5.61 9.80 -38.88 -0.38 -6.00 16 17 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 18 C 0.00 0.03 3.41 -67.50 -0.23 -0.20 16 19 C 0.03 0.32 7.55 -7.54 -0.06 0.26 16 20 N -0.65 -7.53 8.76 -122.65 -1.07 -8.60 16 21 C 0.03 0.32 7.82 -7.54 -0.06 0.26 16 22 H 0.06 0.80 7.64 -51.93 -0.40 0.41 16 23 H 0.08 1.60 6.32 -51.93 -0.33 1.27 16 24 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 25 H 0.06 1.05 7.32 -51.93 -0.38 0.67 16 26 H 0.02 0.36 8.04 -51.93 -0.42 -0.05 16 27 H 0.08 1.71 8.04 -52.49 -0.42 1.29 16 28 H 0.12 3.08 6.19 -52.48 -0.33 2.76 16 29 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 30 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 31 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.33 3.13 8.85 -39.29 -0.35 2.78 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -27.01 302.59 -10.38 -37.38 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.55 Total: 7.43 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -2.78 Total: -25.02 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -1.58 Total: -38.00 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.01 -10.38 -37.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399228264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.572 kcal (2) G-P(sol) polarization free energy of solvation -27.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds