Wall clock time and date at job start Mon Mar 30 2020 04:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46904 * 110.99741 * 2 1 4 4 C 1.50695 * 109.46849 * 66.04641 * 3 2 1 5 5 C 1.38635 * 119.75042 * 269.72122 * 4 3 2 6 6 C 1.37621 * 120.24483 * 179.72704 * 5 4 3 7 7 C 1.40711 * 119.74518 * 0.56842 * 6 5 4 8 8 C 1.41399 * 120.24130 * 179.68150 * 7 6 5 9 9 H 1.07998 * 119.99830 * 205.29377 * 8 7 6 10 10 C 1.39944 * 120.00156 * 25.30178 * 8 7 6 11 11 N 1.30834 * 119.99753 * 17.10558 * 10 8 7 12 12 Si 1.86799 * 120.00240 * 197.10559 * 10 8 7 13 13 H 1.48498 * 109.47132 * 59.99945 * 12 10 8 14 14 H 1.48503 * 109.47155 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47041 * 299.99747 * 12 10 8 16 16 C 1.40713 * 119.51315 * 359.70827 * 7 6 5 17 17 C 1.37607 * 119.74651 * 359.97438 * 16 7 6 18 18 C 1.46901 * 111.00081 * 236.04720 * 2 1 3 19 19 C 1.53512 * 114.17250 * 192.85790 * 18 2 1 20 20 N 1.47481 * 87.93271 * 139.67134 * 19 18 2 21 21 C 1.47487 * 87.83465 * 332.99021 * 20 19 18 22 22 H 1.09001 * 109.46838 * 177.70086 * 1 2 3 23 23 H 1.08998 * 109.47144 * 297.70893 * 1 2 3 24 24 H 1.09001 * 109.46973 * 57.70595 * 1 2 3 25 25 H 1.09007 * 109.46839 * 186.04649 * 3 2 1 26 26 H 1.08997 * 109.46957 * 306.04451 * 3 2 1 27 27 H 1.07993 * 119.87512 * 359.97438 * 5 4 3 28 28 H 1.08004 * 120.12597 * 180.28164 * 6 5 4 29 29 H 0.97005 * 119.99721 * 180.02562 * 11 10 8 30 30 H 1.08001 * 120.12782 * 179.97438 * 16 7 6 31 31 H 1.08004 * 119.87892 * 179.97438 * 17 16 7 32 32 H 1.09003 * 113.38369 * 59.77607 * 18 2 1 33 33 H 1.09003 * 113.47593 * 24.89990 * 19 18 2 34 34 H 1.09002 * 113.52871 * 254.45058 * 19 18 2 35 35 H 1.00899 * 110.99807 * 84.68238 * 20 19 18 36 36 H 1.08996 * 113.47522 * 141.78123 * 21 20 19 37 37 H 1.08998 * 113.47587 * 272.24483 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 6 0.4490 2.7545 1.4007 6 6 0.1088 3.3707 2.5833 7 6 0.9775 3.2907 3.6873 8 6 0.6416 3.9255 4.9053 9 1 1.4203 4.2231 5.5919 10 6 -0.7000 4.1679 5.2213 11 7 -1.6478 3.5310 4.5828 12 14 -1.1375 5.4008 6.5547 13 1 -0.6087 6.7383 6.1849 14 1 -2.6140 5.4745 6.6956 15 1 -0.5377 4.9702 7.8431 16 6 2.1833 2.5748 3.5702 17 6 2.5000 1.9610 2.3800 18 6 1.9955 -0.7660 -1.1376 19 6 3.4955 -1.0789 -1.0444 20 7 3.1940 -2.4213 -1.5757 21 6 1.8450 -2.2870 -0.9948 22 1 -0.3633 -1.0269 -0.0412 23 1 -0.3633 0.4778 0.9098 24 1 -0.3633 0.5491 -0.8687 25 1 3.0798 1.3445 -0.1083 26 1 1.5611 1.9273 -0.8309 27 1 -0.2137 2.8189 0.5504 28 1 -0.8192 3.9175 2.6623 29 1 -2.5778 3.6993 4.8015 30 1 2.8575 2.5073 4.4112 31 1 3.4251 1.4113 2.2876 32 1 1.6804 -0.3752 -2.1052 33 1 3.8738 -1.0913 -0.0222 34 1 4.1085 -0.4747 -1.7133 35 1 3.1561 -2.4110 -2.5840 36 1 1.0584 -2.7064 -1.6220 37 1 1.7829 -2.6218 0.0407 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399228264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:21 Heat of formation + Delta-G solvation = 40.956750 kcal Electronic energy + Delta-G solvation = -17424.809978 eV Core-core repulsion = 14780.906127 eV Total energy + Delta-G solvation = -2643.903851 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96512 -39.48730 -36.91632 -35.28965 -32.05653 -31.17626 -28.91187 -28.05090 -26.67867 -25.80222 -23.69496 -22.76497 -21.53260 -20.96494 -19.19693 -17.44959 -17.21050 -16.88321 -16.31319 -16.01446 -15.69070 -15.10856 -14.88018 -14.21219 -14.14853 -13.81023 -13.61793 -13.46827 -13.34403 -13.19078 -12.84692 -12.75532 -12.58930 -12.41422 -12.19823 -11.97354 -11.41239 -11.31705 -11.22247 -10.98830 -9.72523 -9.38910 -9.25061 -9.07580 -8.61448 -6.31709 0.96623 1.18313 1.37807 1.48804 1.53249 2.21423 2.68426 3.18058 3.23505 3.38186 3.81416 3.95290 4.17880 4.30584 4.46219 4.50448 4.53497 4.62598 4.66121 4.71579 4.79370 4.81411 4.86716 4.96146 5.06482 5.12547 5.17890 5.18475 5.39273 5.49927 5.73336 5.97716 6.06570 6.12178 6.23604 6.31658 6.42554 6.44348 6.72791 6.96680 7.06614 8.35213 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.050854 B = 0.004589 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.465835 B = 6100.370314 C = 6329.821386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.532 5.532 3 C 0.126 3.874 4 C -0.193 4.193 5 C -0.094 4.094 6 C -0.189 4.189 7 C 0.080 3.920 8 C -0.506 4.506 9 H 0.073 0.927 10 C 0.036 3.964 11 N -0.827 5.827 12 Si 0.981 3.019 13 H -0.261 1.261 14 H -0.267 1.267 15 H -0.260 1.260 16 C -0.245 4.245 17 C -0.073 4.073 18 C 0.004 3.996 19 C 0.029 3.971 20 N -0.655 5.655 21 C 0.031 3.969 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.026 0.974 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.287 0.713 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.346 0.654 36 H 0.082 0.918 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -5.711 -10.613 12.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.257 5.257 3 C -0.001 4.001 4 C -0.195 4.195 5 C -0.112 4.112 6 C -0.209 4.209 7 C 0.078 3.922 8 C -0.536 4.536 9 H 0.091 0.909 10 C -0.178 4.178 11 N -0.454 5.454 12 Si 0.802 3.198 13 H -0.185 1.185 14 H -0.191 1.191 15 H -0.184 1.184 16 C -0.264 4.264 17 C -0.091 4.091 18 C -0.106 4.106 19 C -0.101 4.101 20 N -0.283 5.283 21 C -0.099 4.099 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.161 0.839 36 H 0.100 0.900 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.639 -6.608 -9.763 12.338 hybrid contribution -1.343 1.728 -0.388 2.222 sum 2.297 -4.880 -10.151 11.495 Atomic orbital electron populations 1.22258 0.87608 1.01627 1.00198 1.62349 1.08018 1.14057 1.41245 1.20635 0.99504 0.86909 0.93012 1.19270 0.96972 1.06634 0.96624 1.20715 0.96054 0.98153 0.96307 1.21224 1.01266 1.05370 0.93010 1.17944 0.91666 0.89516 0.93111 1.19819 0.93285 1.36378 1.04069 0.90894 1.26725 0.95601 0.96148 0.99372 1.69883 1.01920 1.34563 1.38986 0.85277 0.77886 0.78645 0.78032 1.18536 1.19146 1.18447 1.21176 1.00560 1.06461 0.98247 1.20631 0.98407 0.97606 0.92492 1.24857 0.97344 0.95428 0.93006 1.23543 0.94451 0.90064 1.02087 1.65579 1.18627 1.29683 1.14370 1.23528 0.92078 0.92500 1.01807 0.90670 0.93244 0.95569 0.90118 0.95164 0.88279 0.88489 0.90264 0.88862 0.86889 0.90816 0.89155 0.89995 0.83895 0.89977 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.03 127.69 1.15 2.10 16 2 N -0.53 -15.84 4.71 -900.54 -4.24 -20.08 16 3 C 0.13 4.07 5.05 85.55 0.43 4.50 16 4 C -0.19 -8.06 4.90 -19.67 -0.10 -8.15 16 5 C -0.09 -4.29 8.00 22.22 0.18 -4.11 16 6 C -0.19 -10.10 8.69 22.73 0.20 -9.90 16 7 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 8 C -0.51 -28.06 9.05 23.46 0.21 -27.85 16 9 H 0.07 3.91 7.90 -2.91 -0.02 3.89 16 10 C 0.04 1.86 5.15 85.25 0.44 2.29 16 11 N -0.83 -44.17 10.97 21.83 0.24 -43.93 16 12 Si 0.98 38.96 29.59 68.60 2.03 40.99 16 13 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 14 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 15 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 16 C -0.24 -12.34 9.80 22.73 0.22 -12.12 16 17 C -0.07 -3.21 9.67 22.22 0.21 -2.99 16 18 C 0.00 0.08 3.41 45.37 0.15 0.23 16 19 C 0.03 0.61 7.55 83.58 0.63 1.24 16 20 N -0.66 -13.10 8.76 -541.97 -4.75 -17.85 16 21 C 0.03 0.65 7.82 83.58 0.65 1.30 16 22 H 0.07 1.96 7.64 -2.39 -0.02 1.94 16 23 H 0.05 1.84 6.32 -2.39 -0.02 1.82 16 24 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 25 H 0.08 2.36 7.32 -2.38 -0.02 2.34 16 26 H 0.03 0.94 8.04 -2.39 -0.02 0.92 16 27 H 0.10 4.11 8.04 -2.91 -0.02 4.08 16 28 H 0.10 5.44 6.19 -2.91 -0.02 5.42 16 29 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 30 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.35 5.28 8.85 -89.69 -0.79 4.48 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -59.64 302.59 -2.18 -61.83 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.26 Total: 28.20 kcal Atomic # 6 Polarization: -53.43 SS G_CDS: 4.27 Total: -49.15 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -8.75 Total: -81.86 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -59.64 -2.18 -61.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399228264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.782 kcal (2) G-P(sol) polarization free energy of solvation -59.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds