Wall clock time and date at job start Mon Mar 30 2020 04:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 Br 1.96601 * 115.54817 * 2 1 4 4 C 1.52994 * 117.50394 * 145.70481 * 2 1 3 5 5 C 1.52996 * 60.00111 * 107.49248 * 4 2 1 6 6 H 1.08998 * 117.52115 * 107.48007 * 5 4 2 7 7 C 1.50699 * 117.49985 * 252.51609 * 5 4 2 8 8 O 1.21293 * 120.00471 * 68.61788 * 7 5 4 9 9 N 1.34777 * 119.99768 * 248.61727 * 7 5 4 10 10 C 1.37106 * 119.99958 * 179.97438 * 9 7 5 11 11 H 1.07992 * 120.00328 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99689 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00367 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99822 * 180.27886 * 12 10 9 15 15 H 1.48500 * 109.47088 * 269.73243 * 14 12 10 16 16 H 1.48505 * 109.47152 * 29.72720 * 14 12 10 17 17 H 1.48494 * 109.47142 * 149.72720 * 14 12 10 18 18 H 1.09006 * 109.46571 * 205.67171 * 1 2 3 19 19 H 1.08999 * 109.47302 * 325.66944 * 1 2 3 20 20 H 1.08999 * 109.47240 * 85.67386 * 1 2 3 21 21 H 1.09006 * 117.49772 * 0.02562 * 4 2 1 22 22 H 1.08993 * 117.50434 * 214.98311 * 4 2 1 23 23 H 0.97000 * 120.00327 * 0.02562 * 9 7 5 24 24 H 0.97005 * 120.00032 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3779 1.7738 0.0000 4 6 2.2365 -1.1211 0.7646 5 6 2.2365 -1.1207 -0.7653 6 1 3.1713 -0.8745 -1.2689 7 6 1.3721 -2.1401 -1.4615 8 8 0.1638 -2.0529 -1.4018 9 7 1.9417 -3.1488 -2.1504 10 6 1.1553 -4.0765 -2.7833 11 1 0.0795 -3.9989 -2.7302 12 6 1.7426 -5.1161 -3.4939 13 7 3.0517 -5.2104 -3.5590 14 14 0.6711 -6.3758 -4.3628 15 1 0.3876 -7.5047 -3.4407 16 1 -0.6063 -5.7397 -4.7740 17 1 1.3802 -6.8841 -5.5644 18 1 -0.3633 -0.9263 0.4452 19 1 -0.3634 0.8486 0.5796 20 1 -0.3633 0.0775 -1.0247 21 1 1.6113 -1.8590 1.2674 22 1 3.1715 -0.8754 1.2680 23 1 2.9080 -3.2188 -2.1978 24 1 3.4617 -5.9364 -4.0549 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528329996.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:01 Heat of formation + Delta-G solvation = -17.268197 kcal Electronic energy + Delta-G solvation = -10994.212968 eV Core-core repulsion = 8761.538908 eV Total energy + Delta-G solvation = -2232.674060 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 246.995 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.05213 -36.17923 -33.89909 -31.32221 -29.83422 -28.18050 -25.55267 -22.93590 -20.26583 -18.78348 -17.67550 -16.41990 -14.87585 -14.53317 -13.98332 -13.40413 -13.19688 -12.79412 -12.20615 -11.87152 -11.55865 -11.39386 -11.14598 -10.53457 -10.44076 -10.28965 -10.16753 -9.70198 -9.51072 -9.31919 -8.32023 -8.04322 -6.48776 -3.89516 1.75529 3.10244 3.23163 3.28444 3.42840 4.04351 4.15238 4.66555 4.87117 5.02349 5.26842 5.43247 5.77946 5.92936 6.09609 6.13912 6.30137 6.35011 6.79557 7.48566 7.97844 8.52356 9.09466 9.46211 9.96901 10.68427 Molecular weight = 246.99amu Principal moments of inertia in cm(-1) A = 0.066794 B = 0.005788 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.097841 B = 4836.496510 C = 5027.798491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.063 4.063 3 Br -0.134 7.134 4 C -0.136 4.136 5 C -0.144 4.144 6 H 0.120 0.880 7 C 0.464 3.536 8 O -0.588 6.588 9 N -0.551 5.551 10 C -0.302 4.302 11 H 0.105 0.895 12 C 0.024 3.976 13 N -0.897 5.897 14 Si 0.932 3.068 15 H -0.277 1.277 16 H -0.269 1.269 17 H -0.283 1.283 18 H 0.080 0.920 19 H 0.048 0.952 20 H 0.077 0.923 21 H 0.110 0.890 22 H 0.106 0.894 23 H 0.394 0.606 24 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 10.189 7.223 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 Br -0.053 7.053 4 C -0.175 4.175 5 C -0.167 4.167 6 H 0.137 0.863 7 C 0.249 3.751 8 O -0.474 6.474 9 N -0.185 5.185 10 C -0.431 4.431 11 H 0.123 0.877 12 C -0.178 4.178 13 N -0.538 5.538 14 Si 0.759 3.241 15 H -0.203 1.203 16 H -0.193 1.193 17 H -0.208 1.208 18 H 0.099 0.901 19 H 0.067 0.933 20 H 0.096 0.904 21 H 0.128 0.872 22 H 0.124 0.876 23 H 0.228 0.772 24 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.962 10.707 7.132 12.901 hybrid contribution 0.208 -1.026 -0.561 1.188 sum 1.170 9.681 6.571 11.759 Atomic orbital electron populations 1.21423 0.87846 1.01796 1.03747 1.24828 0.97132 0.83339 1.08703 1.97268 1.82306 1.26591 1.99130 1.23404 1.02193 0.98504 0.93375 1.22619 1.01073 0.97908 0.95065 0.86252 1.18798 0.87877 0.83823 0.84561 1.90521 1.14134 1.76694 1.66025 1.41829 1.09634 1.22846 1.44164 1.19736 0.92560 1.03635 1.27193 0.87732 1.25310 0.96103 0.98673 0.97760 1.69619 1.08970 1.33074 1.42094 0.85829 0.79597 0.80103 0.78606 1.20317 1.19331 1.20835 0.90098 0.93345 0.90375 0.87155 0.87596 0.77249 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 8.16 37.16 0.30 -1.21 14 2 C -0.06 -1.01 3.11 -90.62 -0.28 -1.29 14 3 Br -0.13 -1.92 33.94 -68.01 -2.31 -4.23 14 4 C -0.14 -2.04 9.70 -26.74 -0.26 -2.30 14 5 C -0.14 -2.58 6.01 -91.78 -0.55 -3.13 14 6 H 0.12 1.98 8.14 -51.93 -0.42 1.56 14 7 C 0.46 10.69 7.55 -10.99 -0.08 10.61 14 8 O -0.59 -14.99 12.68 5.55 0.07 -14.91 14 9 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 14 10 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 14 11 H 0.10 2.97 7.16 -52.49 -0.38 2.60 14 12 C 0.02 0.63 5.50 -17.47 -0.10 0.53 14 13 N -0.90 -24.08 13.05 55.50 0.72 -23.36 14 14 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 14 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 14 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 14 18 H 0.08 1.44 7.01 -51.93 -0.36 1.08 14 19 H 0.05 0.69 8.13 -51.93 -0.42 0.27 14 20 H 0.08 1.47 7.26 -51.93 -0.38 1.09 14 21 H 0.11 1.68 8.05 -51.93 -0.42 1.26 14 22 H 0.11 1.34 8.14 -51.93 -0.42 0.92 14 23 H 0.39 9.51 7.90 -40.82 -0.32 9.19 14 24 H 0.27 6.92 8.31 -40.82 -0.34 6.59 14 LS Contribution 235.62 15.07 3.55 3.55 Total: -1.00 -28.31 235.62 -6.42 -34.73 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -2.26 Total: 7.59 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.11 Total: -5.17 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.67 Total: -37.18 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.07 Total: -14.91 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 35 Polarization: -1.92 SS G_CDS: -2.31 Total: -4.23 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.31 -6.42 -34.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528329996.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.462 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds