Wall clock time and date at job start Mon Mar 30 2020 04:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 Br 1.96601 * 115.54817 * 2 1 4 4 C 1.52994 * 117.50394 * 145.70481 * 2 1 3 5 5 C 1.52996 * 60.00111 * 107.49248 * 4 2 1 6 6 H 1.08998 * 117.52115 * 107.48007 * 5 4 2 7 7 C 1.50699 * 117.49985 * 252.51609 * 5 4 2 8 8 O 1.21293 * 120.00471 * 68.61788 * 7 5 4 9 9 N 1.34777 * 119.99768 * 248.61727 * 7 5 4 10 10 C 1.37106 * 119.99958 * 179.97438 * 9 7 5 11 11 H 1.07992 * 120.00328 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99689 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00367 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99822 * 180.27886 * 12 10 9 15 15 H 1.48500 * 109.47088 * 269.73243 * 14 12 10 16 16 H 1.48505 * 109.47152 * 29.72720 * 14 12 10 17 17 H 1.48494 * 109.47142 * 149.72720 * 14 12 10 18 18 H 1.09006 * 109.46571 * 205.67171 * 1 2 3 19 19 H 1.08999 * 109.47302 * 325.66944 * 1 2 3 20 20 H 1.08999 * 109.47240 * 85.67386 * 1 2 3 21 21 H 1.09006 * 117.49772 * 0.02562 * 4 2 1 22 22 H 1.08993 * 117.50434 * 214.98311 * 4 2 1 23 23 H 0.97000 * 120.00327 * 0.02562 * 9 7 5 24 24 H 0.97005 * 120.00032 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3779 1.7738 0.0000 4 6 2.2365 -1.1211 0.7646 5 6 2.2365 -1.1207 -0.7653 6 1 3.1713 -0.8745 -1.2689 7 6 1.3721 -2.1401 -1.4615 8 8 0.1638 -2.0529 -1.4018 9 7 1.9417 -3.1488 -2.1504 10 6 1.1553 -4.0765 -2.7833 11 1 0.0795 -3.9989 -2.7302 12 6 1.7426 -5.1161 -3.4939 13 7 3.0517 -5.2104 -3.5590 14 14 0.6711 -6.3758 -4.3628 15 1 0.3876 -7.5047 -3.4407 16 1 -0.6063 -5.7397 -4.7740 17 1 1.3802 -6.8841 -5.5644 18 1 -0.3633 -0.9263 0.4452 19 1 -0.3634 0.8486 0.5796 20 1 -0.3633 0.0775 -1.0247 21 1 1.6113 -1.8590 1.2674 22 1 3.1715 -0.8754 1.2680 23 1 2.9080 -3.2188 -2.1978 24 1 3.4617 -5.9364 -4.0549 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528329996.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:01 Heat of formation + Delta-G solvation = -35.025446 kcal Electronic energy + Delta-G solvation = -10994.982980 eV Core-core repulsion = 8761.538908 eV Total energy + Delta-G solvation = -2233.444072 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 246.995 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.73132 -37.77772 -35.85093 -33.30336 -31.11383 -29.55799 -27.44070 -24.55728 -21.69827 -20.56254 -19.55034 -18.04840 -16.65013 -16.18475 -15.78030 -15.15460 -14.83191 -14.23188 -13.72374 -13.52276 -13.25571 -12.93754 -12.63021 -12.43883 -12.12397 -11.82504 -11.61020 -11.36508 -10.90237 -10.62814 -10.13516 -10.03237 -8.48625 -5.97444 0.47256 1.35883 1.42308 1.54917 1.81887 2.27975 2.56661 3.08659 3.21714 3.47298 3.76754 3.93443 4.39001 4.56303 4.71786 4.84129 4.89285 4.95449 5.37037 5.42042 5.96937 6.55601 7.08945 7.52412 8.06457 8.68624 Molecular weight = 246.99amu Principal moments of inertia in cm(-1) A = 0.066794 B = 0.005788 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.097841 B = 4836.496510 C = 5027.798491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.065 4.065 3 Br -0.108 7.108 4 C -0.110 4.110 5 C -0.161 4.161 6 H 0.135 0.865 7 C 0.465 3.535 8 O -0.617 6.617 9 N -0.564 5.564 10 C -0.334 4.334 11 H 0.083 0.917 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.995 3.005 15 H -0.270 1.270 16 H -0.272 1.272 17 H -0.272 1.272 18 H 0.064 0.936 19 H 0.074 0.926 20 H 0.051 0.949 21 H 0.108 0.892 22 H 0.139 0.861 23 H 0.396 0.604 24 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 10.665 7.892 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 Br -0.026 7.026 4 C -0.148 4.148 5 C -0.184 4.184 6 H 0.153 0.847 7 C 0.252 3.748 8 O -0.504 6.504 9 N -0.199 5.199 10 C -0.463 4.463 11 H 0.101 0.899 12 C -0.213 4.213 13 N -0.559 5.559 14 Si 0.818 3.182 15 H -0.195 1.195 16 H -0.197 1.197 17 H -0.197 1.197 18 H 0.083 0.917 19 H 0.092 0.908 20 H 0.070 0.930 21 H 0.127 0.873 22 H 0.157 0.843 23 H 0.230 0.770 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.575 11.199 7.813 13.746 hybrid contribution 0.014 -1.056 -0.722 1.279 sum 1.589 10.143 7.092 12.477 Atomic orbital electron populations 1.21301 0.88600 1.02105 1.02310 1.24803 0.96850 0.84569 1.08021 1.97285 1.81699 1.24536 1.99085 1.23539 1.03206 0.97185 0.90900 1.22455 1.01108 0.97937 0.96900 0.84713 1.19656 0.88127 0.83706 0.83284 1.90504 1.15852 1.77386 1.66651 1.41901 1.09536 1.23423 1.45089 1.19710 0.92022 1.05386 1.29178 0.89892 1.26088 0.97400 0.99938 0.97869 1.69683 1.10013 1.33755 1.42494 0.84901 0.77782 0.77688 0.77815 1.19493 1.19676 1.19652 0.91688 0.90771 0.93025 0.87344 0.84292 0.77005 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.78 8.16 71.98 0.59 -2.20 14 2 C -0.06 -1.97 3.11 -10.80 -0.03 -2.00 14 3 Br -0.11 -2.79 33.94 -20.37 -0.69 -3.48 14 4 C -0.11 -3.02 9.70 30.59 0.30 -2.72 14 5 C -0.16 -5.59 6.01 -11.54 -0.07 -5.66 14 6 H 0.14 4.24 8.14 -2.39 -0.02 4.23 14 7 C 0.46 21.67 7.55 87.66 0.66 22.33 14 8 O -0.62 -32.20 12.68 -3.07 -0.04 -32.24 14 9 N -0.56 -28.75 5.29 -306.99 -1.62 -30.37 14 10 C -0.33 -18.64 9.68 84.04 0.81 -17.83 14 11 H 0.08 4.90 7.16 -2.91 -0.02 4.88 14 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 14 13 N -0.92 -49.28 13.05 21.66 0.28 -49.00 14 14 Si 0.99 42.31 29.55 68.60 2.03 44.34 14 15 H -0.27 -11.08 7.11 99.48 0.71 -10.38 14 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 14 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 14 18 H 0.06 2.31 7.01 -2.38 -0.02 2.29 14 19 H 0.07 1.99 8.13 -2.39 -0.02 1.97 14 20 H 0.05 1.95 7.26 -2.39 -0.02 1.93 14 21 H 0.11 3.08 8.05 -2.38 -0.02 3.06 14 22 H 0.14 2.95 8.14 -2.39 -0.02 2.93 14 23 H 0.40 19.41 7.90 -92.71 -0.73 18.67 14 24 H 0.28 13.96 8.31 -92.70 -0.77 13.19 14 Total: -1.00 -60.62 235.62 3.17 -57.45 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.49 Total: 21.59 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 2.72 Total: -8.29 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.34 Total: -79.37 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.04 Total: -32.24 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 35 Polarization: -2.79 SS G_CDS: -0.69 Total: -3.48 kcal Total: -60.62 3.17 -57.45 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528329996.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.428 kcal (2) G-P(sol) polarization free energy of solvation -60.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds