Wall clock time and date at job start Mon Mar 30 2020 04:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 Br 1.96596 * 115.56587 * 2 1 4 4 C 1.53006 * 117.49629 * 214.30877 * 2 1 3 5 5 C 1.52997 * 59.99924 * 252.51523 * 4 2 1 6 6 H 1.09002 * 117.49884 * 107.49654 * 5 4 2 7 7 C 1.50702 * 117.49669 * 252.51146 * 5 4 2 8 8 O 1.21297 * 120.00058 * 68.62298 * 7 5 4 9 9 N 1.34783 * 120.00171 * 248.62535 * 7 5 4 10 10 C 1.37097 * 120.00271 * 180.02562 * 9 7 5 11 11 H 1.07996 * 119.99846 * 359.97438 * 10 9 7 12 12 C 1.38941 * 119.99919 * 179.97438 * 10 9 7 13 13 N 1.31410 * 120.00366 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00107 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47212 * 89.99847 * 14 12 10 16 16 H 1.48500 * 109.47220 * 210.00316 * 14 12 10 17 17 H 1.48506 * 109.46694 * 330.00043 * 14 12 10 18 18 H 1.09003 * 109.47433 * 154.29864 * 1 2 3 19 19 H 1.09002 * 109.47174 * 274.29791 * 1 2 3 20 20 H 1.09001 * 109.47126 * 34.29308 * 1 2 3 21 21 H 1.08999 * 117.49661 * 0.02562 * 4 2 1 22 22 H 1.08999 * 117.49552 * 144.99844 * 4 2 1 23 23 H 0.96998 * 119.99485 * 0.02562 * 9 7 5 24 24 H 0.97005 * 120.00034 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3784 1.7735 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2363 -1.1211 0.7650 6 1 1.6111 -1.8586 1.2682 7 6 3.5292 -0.7813 1.4608 8 8 3.9718 0.3465 1.4012 9 7 4.1937 -1.7305 2.1494 10 6 5.3695 -1.4212 2.7828 11 1 5.7636 -0.4171 2.7298 12 6 6.0542 -2.3996 3.4931 13 7 5.5750 -3.6215 3.5572 14 14 7.6567 -1.9785 4.3556 15 1 7.3694 -1.5257 5.7405 16 1 8.5268 -3.1812 4.3984 17 1 8.3480 -0.8936 3.6135 18 1 -0.3634 -0.9260 -0.4457 19 1 -0.3633 0.0770 1.0248 20 1 -0.3633 0.8490 -0.5790 21 1 1.6111 -1.8583 -1.2686 22 1 3.1713 -0.8752 -1.2686 23 1 3.8399 -2.6324 2.1967 24 1 6.0528 -4.3045 4.0534 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528330004.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:03 Heat of formation + Delta-G solvation = -3.676882 kcal Electronic energy + Delta-G solvation = -11005.742017 eV Core-core repulsion = 8773.657321 eV Total energy + Delta-G solvation = -2232.084697 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 246.995 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.81803 -36.22692 -33.79803 -31.16700 -29.45951 -28.45671 -25.43554 -22.84785 -20.07034 -18.75785 -17.73520 -16.35212 -14.71202 -14.42492 -13.88717 -13.64050 -13.17725 -13.02453 -12.40728 -11.75966 -11.57666 -11.21953 -11.05937 -10.56377 -10.39123 -10.21855 -10.11661 -9.52024 -9.33296 -9.00926 -7.91865 -7.59512 -6.39692 -3.79128 2.18864 3.16610 3.27788 3.33997 3.49120 4.13863 4.21966 4.61615 4.91751 5.02383 5.34334 5.45220 5.68193 5.74882 5.79579 5.84581 6.08263 6.21614 6.43936 7.57515 8.08315 8.64806 9.20644 9.58131 10.10806 10.78091 Molecular weight = 246.99amu Principal moments of inertia in cm(-1) A = 0.048625 B = 0.007400 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.694842 B = 3782.787935 C = 4225.125461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.084 4.084 3 Br -0.083 7.083 4 C -0.137 4.137 5 C -0.148 4.148 6 H 0.119 0.881 7 C 0.458 3.542 8 O -0.560 6.560 9 N -0.557 5.557 10 C -0.296 4.296 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 H 0.067 0.933 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.105 0.895 22 H 0.106 0.894 23 H 0.391 0.609 24 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 4.128 -7.468 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.163 4.163 3 Br -0.001 7.001 4 C -0.175 4.175 5 C -0.171 4.171 6 H 0.137 0.863 7 C 0.242 3.758 8 O -0.443 6.443 9 N -0.193 5.193 10 C -0.425 4.425 11 H 0.122 0.878 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 H 0.086 0.914 19 H 0.086 0.914 20 H 0.087 0.913 21 H 0.123 0.877 22 H 0.124 0.876 23 H 0.224 0.776 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.907 5.347 -7.401 12.755 hybrid contribution 0.394 -0.948 0.581 1.180 sum -8.512 4.400 -6.819 11.761 Atomic orbital electron populations 1.21461 0.89594 1.02622 1.02879 1.24754 0.95382 0.87397 1.08722 1.97303 1.83701 1.20284 1.98827 1.23330 1.02432 0.98320 0.93465 1.22492 0.99726 0.99907 0.94968 0.86315 1.18929 0.85922 0.86392 0.84549 1.90746 1.68677 1.20151 1.64769 1.41853 1.21415 1.11073 1.44975 1.19716 0.98026 0.97985 1.26794 0.87844 1.25255 0.99851 0.94875 0.98006 1.69618 1.40232 1.01995 1.42462 0.85867 0.81092 0.77884 0.79506 1.20429 1.20952 1.19419 0.91376 0.91392 0.91288 0.87703 0.87608 0.77575 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.92 37.16 0.37 -0.92 14 2 C -0.08 -1.35 3.10 -90.62 -0.28 -1.63 14 3 Br -0.08 -1.53 30.39 -68.01 -2.07 -3.60 14 4 C -0.14 -2.07 9.70 -26.73 -0.26 -2.32 14 5 C -0.15 -2.65 5.91 -91.77 -0.54 -3.20 14 6 H 0.12 1.86 8.14 -51.93 -0.42 1.44 14 7 C 0.46 10.84 7.56 -10.98 -0.08 10.76 14 8 O -0.56 -14.80 12.76 5.54 0.07 -14.73 14 9 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 14 10 C -0.30 -8.28 9.68 -14.94 -0.14 -8.43 14 11 H 0.10 3.04 7.16 -52.49 -0.38 2.66 14 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 14 13 N -0.90 -24.69 13.05 55.49 0.72 -23.97 14 14 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 14 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 14 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 14 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 14 18 H 0.07 0.67 7.90 -51.93 -0.41 0.26 14 19 H 0.07 0.80 8.14 -51.93 -0.42 0.38 14 20 H 0.07 0.76 8.13 -51.93 -0.42 0.34 14 21 H 0.10 1.23 8.05 -51.93 -0.42 0.81 14 22 H 0.11 1.75 8.14 -51.93 -0.42 1.33 14 23 H 0.39 9.62 7.90 -40.82 -0.32 9.29 14 24 H 0.27 7.02 8.31 -40.82 -0.34 6.68 14 LS Contribution 235.59 15.07 3.55 3.55 Total: -1.00 -30.32 235.59 -6.19 -36.51 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -2.35 Total: 5.58 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.04 Total: -5.24 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.67 Total: -38.28 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.07 Total: -14.73 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 35 Polarization: -1.53 SS G_CDS: -2.07 Total: -3.60 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.32 -6.19 -36.51 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528330004.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.831 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds