Wall clock time and date at job start Mon Mar 30 2020 04:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 Br 1.96596 * 115.56587 * 2 1 4 4 C 1.53006 * 117.49629 * 214.30877 * 2 1 3 5 5 C 1.52997 * 59.99924 * 252.51523 * 4 2 1 6 6 H 1.09002 * 117.49884 * 107.49654 * 5 4 2 7 7 C 1.50702 * 117.49669 * 252.51146 * 5 4 2 8 8 O 1.21297 * 120.00058 * 68.62298 * 7 5 4 9 9 N 1.34783 * 120.00171 * 248.62535 * 7 5 4 10 10 C 1.37097 * 120.00271 * 180.02562 * 9 7 5 11 11 H 1.07996 * 119.99846 * 359.97438 * 10 9 7 12 12 C 1.38941 * 119.99919 * 179.97438 * 10 9 7 13 13 N 1.31410 * 120.00366 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00107 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47212 * 89.99847 * 14 12 10 16 16 H 1.48500 * 109.47220 * 210.00316 * 14 12 10 17 17 H 1.48506 * 109.46694 * 330.00043 * 14 12 10 18 18 H 1.09003 * 109.47433 * 154.29864 * 1 2 3 19 19 H 1.09002 * 109.47174 * 274.29791 * 1 2 3 20 20 H 1.09001 * 109.47126 * 34.29308 * 1 2 3 21 21 H 1.08999 * 117.49661 * 0.02562 * 4 2 1 22 22 H 1.08999 * 117.49552 * 144.99844 * 4 2 1 23 23 H 0.96998 * 119.99485 * 0.02562 * 9 7 5 24 24 H 0.97005 * 120.00034 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3784 1.7735 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2363 -1.1211 0.7650 6 1 1.6111 -1.8586 1.2682 7 6 3.5292 -0.7813 1.4608 8 8 3.9718 0.3465 1.4012 9 7 4.1937 -1.7305 2.1494 10 6 5.3695 -1.4212 2.7828 11 1 5.7636 -0.4171 2.7298 12 6 6.0542 -2.3996 3.4931 13 7 5.5750 -3.6215 3.5572 14 14 7.6567 -1.9785 4.3556 15 1 7.3694 -1.5257 5.7405 16 1 8.5268 -3.1812 4.3984 17 1 8.3480 -0.8936 3.6135 18 1 -0.3634 -0.9260 -0.4457 19 1 -0.3633 0.0770 1.0248 20 1 -0.3633 0.8490 -0.5790 21 1 1.6111 -1.8583 -1.2686 22 1 3.1713 -0.8752 -1.2686 23 1 3.8399 -2.6324 2.1967 24 1 6.0528 -4.3045 4.0534 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528330004.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:03 Heat of formation + Delta-G solvation = -23.716106 kcal Electronic energy + Delta-G solvation = -11006.610983 eV Core-core repulsion = 8773.657321 eV Total energy + Delta-G solvation = -2232.953663 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 246.995 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.49807 -37.78842 -35.79979 -33.19515 -30.78507 -29.55942 -27.34460 -24.45663 -21.45172 -20.45008 -19.64372 -18.04362 -16.66575 -15.91805 -15.63597 -15.19320 -14.77908 -14.25289 -13.81136 -13.51635 -13.01422 -12.93695 -12.43327 -12.40102 -12.14399 -11.75605 -11.57519 -11.39645 -10.89357 -10.38035 -9.94756 -9.30955 -8.44734 -5.91857 0.91064 1.36744 1.41233 1.53880 1.89824 2.29961 2.65036 3.11018 3.25722 3.61268 3.80911 4.00405 4.47134 4.58864 4.74484 4.84182 4.86042 5.01426 5.22384 5.43248 6.02193 6.63350 7.15813 7.60763 8.17590 8.72841 Molecular weight = 246.99amu Principal moments of inertia in cm(-1) A = 0.048625 B = 0.007400 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.694842 B = 3782.787935 C = 4225.125461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.078 4.078 3 Br -0.119 7.119 4 C -0.116 4.116 5 C -0.168 4.168 6 H 0.147 0.853 7 C 0.454 3.546 8 O -0.593 6.593 9 N -0.571 5.571 10 C -0.328 4.328 11 H 0.079 0.921 12 C -0.014 4.014 13 N -0.922 5.922 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.274 1.274 18 H 0.100 0.900 19 H 0.069 0.931 20 H 0.078 0.922 21 H 0.153 0.847 22 H 0.087 0.913 23 H 0.394 0.606 24 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 3.241 -8.002 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.156 4.156 3 Br -0.038 7.038 4 C -0.154 4.154 5 C -0.190 4.190 6 H 0.164 0.836 7 C 0.241 3.759 8 O -0.478 6.478 9 N -0.207 5.207 10 C -0.457 4.457 11 H 0.097 0.903 12 C -0.214 4.214 13 N -0.563 5.563 14 Si 0.815 3.185 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.199 1.199 18 H 0.119 0.881 19 H 0.088 0.912 20 H 0.097 0.903 21 H 0.171 0.829 22 H 0.105 0.895 23 H 0.227 0.773 24 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.057 4.450 -7.943 13.566 hybrid contribution 0.693 -0.662 0.695 1.183 sum -9.364 3.789 -7.249 12.433 Atomic orbital electron populations 1.21545 0.86033 1.04845 1.03648 1.25136 0.97513 0.85271 1.07681 1.97304 1.84504 1.23173 1.98809 1.23510 1.02306 0.98505 0.91106 1.22430 0.97419 1.02453 0.96734 0.83580 1.19938 0.87181 0.85509 0.83320 1.90727 1.70149 1.21433 1.65476 1.41927 1.21328 1.11614 1.45876 1.19651 0.99812 0.97425 1.28845 0.90330 1.25998 1.02610 0.94638 0.98106 1.69677 1.41331 1.02496 1.42773 0.84962 0.77367 0.77845 0.78367 1.19738 1.19531 1.19907 0.88099 0.91210 0.90258 0.82914 0.89469 0.77255 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 9.92 71.98 0.71 -1.34 14 2 C -0.08 -2.30 3.10 -10.79 -0.03 -2.33 14 3 Br -0.12 -4.38 30.39 -20.37 -0.62 -5.00 14 4 C -0.12 -3.15 9.70 30.60 0.30 -2.85 14 5 C -0.17 -5.69 5.91 -11.54 -0.07 -5.75 14 6 H 0.15 4.13 8.14 -2.39 -0.02 4.11 14 7 C 0.45 21.62 7.56 87.66 0.66 22.28 14 8 O -0.59 -32.00 12.76 -3.08 -0.04 -32.04 14 9 N -0.57 -29.60 5.29 -306.98 -1.62 -31.23 14 10 C -0.33 -18.79 9.68 84.04 0.81 -17.98 14 11 H 0.08 4.81 7.16 -2.91 -0.02 4.78 14 12 C -0.01 -0.76 5.50 84.92 0.47 -0.29 14 13 N -0.92 -50.25 13.05 21.66 0.28 -49.96 14 14 Si 0.99 43.59 29.55 68.60 2.03 45.61 14 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 14 16 H -0.27 -11.25 7.11 99.48 0.71 -10.54 14 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 14 18 H 0.10 1.41 7.90 -2.39 -0.02 1.39 14 19 H 0.07 1.40 8.14 -2.39 -0.02 1.38 14 20 H 0.08 1.45 8.13 -2.39 -0.02 1.43 14 21 H 0.15 2.73 8.05 -2.39 -0.02 2.71 14 22 H 0.09 2.74 8.14 -2.39 -0.02 2.72 14 23 H 0.39 19.51 7.90 -92.71 -0.73 18.78 14 24 H 0.28 14.12 8.31 -92.70 -0.77 13.35 14 Total: -1.00 -66.50 235.59 3.36 -63.14 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.48 Total: 17.74 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 2.85 Total: -8.26 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -1.34 Total: -81.19 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.04 Total: -32.04 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 35 Polarization: -4.38 SS G_CDS: -0.62 Total: -5.00 kcal Total: -66.50 3.36 -63.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528330004.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.419 kcal (2) G-P(sol) polarization free energy of solvation -66.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds