Wall clock time and date at job start Mon Mar 30 2020 04:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 Br 1.96602 * 115.55925 * 2 1 4 4 C 1.53002 * 117.49773 * 214.31620 * 2 1 3 5 5 C 1.53000 * 60.02940 * 252.51785 * 4 2 1 6 6 H 1.08999 * 117.49959 * 252.49451 * 5 4 2 7 7 C 1.50706 * 117.49681 * 107.47810 * 5 4 2 8 8 O 1.21295 * 119.99837 * 291.39185 * 7 5 4 9 9 N 1.34774 * 120.00002 * 111.39157 * 7 5 4 10 10 C 1.37100 * 120.00267 * 180.02562 * 9 7 5 11 11 H 1.08001 * 119.99781 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00241 * 180.02562 * 10 9 7 13 13 N 1.31418 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00017 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47028 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47190 * 119.99741 * 14 12 10 17 17 H 1.48497 * 109.46781 * 239.99683 * 14 12 10 18 18 H 1.09005 * 109.47034 * 154.29332 * 1 2 3 19 19 H 1.08996 * 109.47323 * 274.29220 * 1 2 3 20 20 H 1.08997 * 109.47719 * 34.29791 * 1 2 3 21 21 H 1.09002 * 117.49918 * 145.01819 * 4 2 1 22 22 H 1.09002 * 117.49754 * 0.02562 * 4 2 1 23 23 H 0.96999 * 119.99862 * 359.97438 * 9 7 5 24 24 H 0.96991 * 119.99548 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3783 1.7736 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2367 -1.1218 0.7649 6 1 3.1720 -0.8766 1.2681 7 6 1.3721 -2.1417 1.4603 8 8 0.1638 -2.0541 1.4007 9 7 1.9415 -3.1511 2.1483 10 6 1.1549 -4.0792 2.7805 11 1 0.0790 -4.0012 2.7275 12 6 1.7419 -5.1195 3.4903 13 7 3.0511 -5.2141 3.5553 14 14 0.6702 -6.3844 4.3510 15 1 -0.7604 -6.0562 4.1262 16 1 0.9608 -7.7340 3.8039 17 1 0.9584 -6.3682 5.8077 18 1 -0.3633 -0.9260 -0.4458 19 1 -0.3634 0.0769 1.0247 20 1 -0.3634 0.8489 -0.5790 21 1 3.1715 -0.8751 -1.2684 22 1 1.6112 -1.8581 -1.2688 23 1 2.9077 -3.2213 2.1956 24 1 3.4608 -5.9405 4.0504 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528330008.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:05 Heat of formation + Delta-G solvation = -17.301711 kcal Electronic energy + Delta-G solvation = -10993.940825 eV Core-core repulsion = 8761.265311 eV Total energy + Delta-G solvation = -2232.675514 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 246.995 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.04955 -36.17767 -33.90019 -31.32282 -29.83491 -28.18151 -25.55415 -22.93642 -20.26504 -18.78533 -17.67756 -16.42023 -14.87581 -14.53724 -13.97703 -13.40578 -13.20006 -12.79498 -12.20737 -11.87395 -11.56091 -11.39410 -11.16559 -10.53568 -10.38947 -10.29687 -10.17136 -9.70554 -9.51874 -9.31855 -8.32133 -8.04405 -6.48989 -3.89636 1.75473 3.08773 3.23457 3.30280 3.42339 4.04378 4.15001 4.66379 4.87045 5.02288 5.26679 5.43191 5.77906 5.92844 6.09537 6.13829 6.30073 6.34939 6.79503 7.48705 7.97973 8.52217 9.09477 9.46158 9.96782 10.68334 Molecular weight = 246.99amu Principal moments of inertia in cm(-1) A = 0.066858 B = 0.005786 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.697912 B = 4837.863914 C = 5029.638184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.063 4.063 3 Br -0.134 7.134 4 C -0.136 4.136 5 C -0.144 4.144 6 H 0.120 0.880 7 C 0.464 3.536 8 O -0.588 6.588 9 N -0.551 5.551 10 C -0.301 4.301 11 H 0.105 0.895 12 C 0.023 3.977 13 N -0.897 5.897 14 Si 0.931 3.069 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.281 1.281 18 H 0.080 0.920 19 H 0.077 0.923 20 H 0.048 0.952 21 H 0.106 0.894 22 H 0.110 0.890 23 H 0.394 0.606 24 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 10.208 -7.238 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 Br -0.053 7.053 4 C -0.175 4.175 5 C -0.167 4.167 6 H 0.138 0.862 7 C 0.250 3.750 8 O -0.474 6.474 9 N -0.185 5.185 10 C -0.431 4.431 11 H 0.123 0.877 12 C -0.179 4.179 13 N -0.538 5.538 14 Si 0.758 3.242 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.207 1.207 18 H 0.099 0.901 19 H 0.096 0.904 20 H 0.067 0.933 21 H 0.124 0.876 22 H 0.128 0.872 23 H 0.227 0.773 24 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.941 10.722 -7.157 12.926 hybrid contribution 0.220 -1.025 0.571 1.194 sum 1.161 9.698 -6.585 11.780 Atomic orbital electron populations 1.21422 0.87844 1.01797 1.03750 1.24842 0.97124 0.83333 1.08709 1.97268 1.82292 1.26600 1.99129 1.23406 1.02192 0.98507 0.93372 1.22633 1.01063 0.97890 0.95075 0.86248 1.18801 0.87878 0.83809 0.84554 1.90522 1.14137 1.76704 1.65995 1.41833 1.09641 1.22812 1.44217 1.19786 0.92582 1.03542 1.27142 0.87678 1.25313 0.96107 0.98683 0.97779 1.69627 1.08972 1.33095 1.42057 0.85773 0.79986 0.79722 0.78711 1.19143 1.20665 1.20661 0.90098 0.90376 0.93342 0.87599 0.87158 0.77253 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 8.16 37.16 0.30 -1.20 14 2 C -0.06 -1.01 3.11 -90.58 -0.28 -1.30 14 3 Br -0.13 -1.92 33.94 -68.01 -2.31 -4.23 14 4 C -0.14 -2.04 9.69 -26.73 -0.26 -2.30 14 5 C -0.14 -2.57 6.01 -91.73 -0.55 -3.13 14 6 H 0.12 1.98 8.14 -51.93 -0.42 1.56 14 7 C 0.46 10.69 7.55 -10.98 -0.08 10.61 14 8 O -0.59 -14.98 12.68 5.54 0.07 -14.91 14 9 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 14 10 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 14 11 H 0.11 3.00 7.16 -52.49 -0.38 2.62 14 12 C 0.02 0.62 5.50 -17.47 -0.10 0.52 14 13 N -0.90 -24.08 13.05 55.50 0.72 -23.35 14 14 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 14 15 H -0.27 -5.92 7.11 56.52 0.40 -5.51 14 16 H -0.28 -6.13 7.11 56.52 0.40 -5.72 14 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 14 18 H 0.08 1.44 7.02 -51.93 -0.36 1.08 14 19 H 0.08 1.47 7.26 -51.93 -0.38 1.09 14 20 H 0.05 0.69 8.13 -51.93 -0.42 0.27 14 21 H 0.11 1.34 8.14 -51.93 -0.42 0.92 14 22 H 0.11 1.67 8.05 -51.93 -0.42 1.26 14 23 H 0.39 9.51 7.90 -40.82 -0.32 9.19 14 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 14 LS Contribution 235.63 15.07 3.55 3.55 Total: -1.00 -28.33 235.63 -6.42 -34.75 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.26 Total: 7.55 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.11 Total: -5.16 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.67 Total: -37.18 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.07 Total: -14.91 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 35 Polarization: -1.92 SS G_CDS: -2.31 Total: -4.23 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.33 -6.42 -34.75 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528330008.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.449 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds