Wall clock time and date at job start Mon Mar 30 2020 04:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 Br 1.96602 * 115.55925 * 2 1 4 4 C 1.53002 * 117.49773 * 214.31620 * 2 1 3 5 5 C 1.53000 * 60.02940 * 252.51785 * 4 2 1 6 6 H 1.08999 * 117.49959 * 252.49451 * 5 4 2 7 7 C 1.50706 * 117.49681 * 107.47810 * 5 4 2 8 8 O 1.21295 * 119.99837 * 291.39185 * 7 5 4 9 9 N 1.34774 * 120.00002 * 111.39157 * 7 5 4 10 10 C 1.37100 * 120.00267 * 180.02562 * 9 7 5 11 11 H 1.08001 * 119.99781 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00241 * 180.02562 * 10 9 7 13 13 N 1.31418 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00017 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47028 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47190 * 119.99741 * 14 12 10 17 17 H 1.48497 * 109.46781 * 239.99683 * 14 12 10 18 18 H 1.09005 * 109.47034 * 154.29332 * 1 2 3 19 19 H 1.08996 * 109.47323 * 274.29220 * 1 2 3 20 20 H 1.08997 * 109.47719 * 34.29791 * 1 2 3 21 21 H 1.09002 * 117.49918 * 145.01819 * 4 2 1 22 22 H 1.09002 * 117.49754 * 0.02562 * 4 2 1 23 23 H 0.96999 * 119.99862 * 359.97438 * 9 7 5 24 24 H 0.96991 * 119.99548 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3783 1.7736 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2367 -1.1218 0.7649 6 1 3.1720 -0.8766 1.2681 7 6 1.3721 -2.1417 1.4603 8 8 0.1638 -2.0541 1.4007 9 7 1.9415 -3.1511 2.1483 10 6 1.1549 -4.0792 2.7805 11 1 0.0790 -4.0012 2.7275 12 6 1.7419 -5.1195 3.4903 13 7 3.0511 -5.2141 3.5553 14 14 0.6702 -6.3844 4.3510 15 1 -0.7604 -6.0562 4.1262 16 1 0.9608 -7.7340 3.8039 17 1 0.9584 -6.3682 5.8077 18 1 -0.3633 -0.9260 -0.4458 19 1 -0.3634 0.0769 1.0247 20 1 -0.3634 0.8489 -0.5790 21 1 3.1715 -0.8751 -1.2684 22 1 1.6112 -1.8581 -1.2688 23 1 2.9077 -3.2213 2.1956 24 1 3.4608 -5.9405 4.0504 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528330008.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:05 Heat of formation + Delta-G solvation = -35.078803 kcal Electronic energy + Delta-G solvation = -10994.711697 eV Core-core repulsion = 8761.265311 eV Total energy + Delta-G solvation = -2233.446386 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 246.995 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.72900 -37.77511 -35.85187 -33.30403 -31.11402 -29.55860 -27.44240 -24.55755 -21.69681 -20.56387 -19.55283 -18.04879 -16.65272 -16.18686 -15.77457 -15.15567 -14.83475 -14.23211 -13.72559 -13.52901 -13.25642 -12.94618 -12.62995 -12.42727 -12.11019 -11.82586 -11.61801 -11.36747 -10.90250 -10.62727 -10.13574 -10.03218 -8.48860 -5.97554 0.47245 1.34456 1.42346 1.56422 1.81585 2.27958 2.56411 3.08669 3.21501 3.47134 3.76802 3.93423 4.38938 4.56306 4.71769 4.84112 4.89261 4.95435 5.37128 5.42159 5.97024 6.55502 7.09002 7.52365 8.06393 8.68666 Molecular weight = 246.99amu Principal moments of inertia in cm(-1) A = 0.066858 B = 0.005786 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.697912 B = 4837.863914 C = 5029.638184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.065 4.065 3 Br -0.108 7.108 4 C -0.110 4.110 5 C -0.161 4.161 6 H 0.135 0.865 7 C 0.465 3.535 8 O -0.617 6.617 9 N -0.565 5.565 10 C -0.332 4.332 11 H 0.083 0.917 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.995 3.005 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.272 1.272 18 H 0.064 0.936 19 H 0.051 0.949 20 H 0.074 0.926 21 H 0.139 0.861 22 H 0.108 0.892 23 H 0.396 0.604 24 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 10.685 -7.892 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 Br -0.026 7.026 4 C -0.148 4.148 5 C -0.184 4.184 6 H 0.153 0.847 7 C 0.252 3.748 8 O -0.504 6.504 9 N -0.200 5.200 10 C -0.462 4.462 11 H 0.101 0.899 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.818 3.182 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.197 1.197 18 H 0.083 0.917 19 H 0.070 0.930 20 H 0.092 0.908 21 H 0.157 0.843 22 H 0.127 0.873 23 H 0.230 0.770 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.572 11.216 -7.821 13.764 hybrid contribution 0.022 -1.057 0.729 1.284 sum 1.594 10.160 -7.092 12.492 Atomic orbital electron populations 1.21300 0.88601 1.02104 1.02314 1.24816 0.96841 0.84563 1.08026 1.97285 1.81684 1.24543 1.99084 1.23541 1.03207 0.97188 0.90902 1.22468 1.01097 0.97915 0.96911 0.84704 1.19659 0.88127 0.83696 0.83276 1.90505 1.15860 1.77399 1.66623 1.41904 1.09541 1.23387 1.45138 1.19743 0.92007 1.05301 1.29136 0.89905 1.26090 0.97404 0.99953 0.97880 1.69687 1.10008 1.33803 1.42462 0.84842 0.77963 0.77482 0.77882 1.19600 1.19560 1.19725 0.91694 0.93021 0.90769 0.84294 0.87348 0.77005 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.78 8.16 71.98 0.59 -2.20 14 2 C -0.06 -1.97 3.11 -10.77 -0.03 -2.00 14 3 Br -0.11 -2.79 33.94 -20.37 -0.69 -3.48 14 4 C -0.11 -3.02 9.69 30.60 0.30 -2.72 14 5 C -0.16 -5.58 6.01 -11.51 -0.07 -5.65 14 6 H 0.14 4.24 8.14 -2.39 -0.02 4.22 14 7 C 0.47 21.67 7.55 87.66 0.66 22.34 14 8 O -0.62 -32.21 12.68 -3.07 -0.04 -32.25 14 9 N -0.56 -28.75 5.29 -306.98 -1.62 -30.37 14 10 C -0.33 -18.58 9.68 84.04 0.81 -17.77 14 11 H 0.08 4.90 7.16 -2.91 -0.02 4.88 14 12 C -0.01 -0.70 5.50 84.93 0.47 -0.23 14 13 N -0.92 -49.27 13.05 21.66 0.28 -48.98 14 14 Si 0.99 42.34 29.55 68.60 2.03 44.36 14 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 14 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 14 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 14 18 H 0.06 2.31 7.02 -2.38 -0.02 2.29 14 19 H 0.05 1.95 7.26 -2.39 -0.02 1.93 14 20 H 0.07 1.99 8.13 -2.39 -0.02 1.97 14 21 H 0.14 2.95 8.14 -2.39 -0.02 2.93 14 22 H 0.11 3.08 8.05 -2.39 -0.02 3.06 14 23 H 0.40 19.40 7.90 -92.71 -0.73 18.67 14 24 H 0.28 13.91 8.31 -92.71 -0.77 13.14 14 Total: -1.00 -60.67 235.63 3.17 -57.50 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.49 Total: 21.46 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 2.72 Total: -8.24 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -1.34 Total: -79.36 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.04 Total: -32.25 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 35 Polarization: -2.79 SS G_CDS: -0.69 Total: -3.48 kcal Total: -60.67 3.17 -57.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528330008.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.425 kcal (2) G-P(sol) polarization free energy of solvation -60.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds