Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86794 * 120.00086 * 2 1 4 4 H 1.48504 * 109.47526 * 239.99766 * 3 2 1 5 5 H 1.48507 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47259 * 119.99645 * 3 2 1 7 7 C 1.39950 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 197.08842 * 7 2 1 9 9 C 1.41395 * 119.99823 * 17.37123 * 7 2 1 10 10 C 1.40562 * 120.08209 * 25.17197 * 9 7 2 11 11 C 1.37600 * 119.54387 * 179.84601 * 10 9 7 12 12 C 1.38433 * 120.14026 * 0.61326 * 11 10 9 13 13 C 1.39147 * 120.91571 * 359.66711 * 12 11 10 14 14 C 1.37246 * 119.86805 * 359.85236 * 13 12 11 15 15 C 1.50683 * 121.80775 * 180.60517 * 14 13 12 16 16 C 1.52896 * 109.98401 * 343.03837 * 15 14 13 17 17 N 1.47174 * 108.47069 * 50.24670 * 16 15 14 18 18 C 1.46903 * 110.99726 * 165.52936 * 17 16 15 19 19 C 1.52997 * 109.47257 * 56.92537 * 18 17 16 20 20 N 1.46901 * 109.46907 * 179.97438 * 19 18 17 21 21 C 1.46616 * 110.23438 * 288.93584 * 17 16 15 22 22 H 0.96993 * 120.00147 * 0.02562 * 1 2 3 23 23 H 1.08005 * 120.23250 * 0.12492 * 10 9 7 24 24 H 1.07998 * 119.93161 * 180.32473 * 11 10 9 25 25 H 1.07995 * 119.54378 * 179.64867 * 12 11 10 26 26 H 1.09004 * 109.38414 * 103.19294 * 15 14 13 27 27 H 1.08999 * 109.38735 * 222.87950 * 15 14 13 28 28 H 1.08997 * 109.63720 * 290.55084 * 16 15 14 29 29 H 1.09003 * 109.80275 * 170.03976 * 16 15 14 30 30 H 1.09001 * 109.46657 * 176.92420 * 18 17 16 31 31 H 1.09003 * 109.46904 * 296.92240 * 18 17 16 32 32 H 1.09001 * 109.47192 * 299.99556 * 19 18 17 33 33 H 1.09003 * 109.47406 * 60.00010 * 19 18 17 34 34 H 1.00899 * 111.00010 * 56.04512 * 20 19 18 35 35 H 1.00900 * 110.99716 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.26685 * 292.30277 * 21 17 16 37 37 H 1.08997 * 109.23412 * 172.81854 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0080 -1.2120 0.0005 8 1 3.0523 -1.2325 0.2754 9 6 1.3494 -2.4087 -0.3645 10 6 0.2234 -2.3652 -1.2048 11 6 -0.4071 -3.5368 -1.5556 12 6 0.0581 -4.7480 -1.0730 13 6 1.1680 -4.8052 -0.2357 14 6 1.8173 -3.6490 0.1184 15 6 3.0310 -3.6614 1.0113 16 6 3.1261 -4.9992 1.7454 17 7 2.9978 -6.0830 0.7580 18 6 3.4175 -7.3691 1.3306 19 6 2.5910 -7.6634 2.5840 20 7 3.0103 -8.9497 3.1561 21 6 1.6209 -6.1542 0.2592 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1417 -1.4190 -1.5762 24 1 -1.2696 -3.5110 -2.2051 25 1 -0.4476 -5.6612 -1.3500 26 1 3.9263 -3.5160 0.4068 27 1 2.9528 -2.8539 1.7393 28 1 2.3218 -5.0734 2.4773 29 1 4.0891 -5.0757 2.2503 30 1 3.2613 -8.1611 0.5981 31 1 4.4740 -7.3217 1.5948 32 1 2.7472 -6.8714 3.3165 33 1 1.5345 -7.7108 2.3198 34 1 4.0006 -8.9538 3.3498 35 1 2.4790 -9.1667 3.9860 36 1 0.9632 -6.4813 1.0645 37 1 1.5722 -6.8724 -0.5592 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600747779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = 15.389721 kcal Electronic energy + Delta-G solvation = -17826.793494 eV Core-core repulsion = 15181.780974 eV Total energy + Delta-G solvation = -2645.012520 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.14871 -36.94572 -34.35568 -33.54820 -31.74641 -30.23754 -28.63855 -26.64569 -25.11117 -23.77841 -22.78060 -20.97445 -20.45884 -18.18372 -17.00657 -16.14180 -15.53994 -15.29412 -15.03309 -14.59833 -14.03362 -13.83637 -13.47276 -13.24784 -12.90607 -12.31817 -12.20522 -11.86005 -11.69475 -11.36552 -11.25159 -11.11623 -11.00908 -10.68601 -10.59458 -10.43932 -10.08114 -9.40643 -9.20281 -9.08664 -8.85535 -7.95680 -7.24946 -7.12211 -6.71853 -4.31693 2.81784 2.99856 3.07582 3.10272 3.24962 3.94838 4.21499 4.62891 4.64468 5.02708 5.17812 5.48324 5.54470 5.57274 5.70841 5.85296 5.96551 6.04169 6.12866 6.18527 6.22757 6.39682 6.47551 6.72198 6.85306 6.90690 6.97130 7.10454 7.23122 7.25635 7.32621 7.50537 7.54109 7.70530 7.97029 8.09815 8.14162 8.33479 8.67053 8.93093 9.02428 10.22288 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031221 B = 0.006105 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.615818 B = 4585.555499 C = 5232.203400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.111 3.889 10 C -0.166 4.166 11 C -0.106 4.106 12 C -0.236 4.236 13 C -0.061 4.061 14 C -0.172 4.172 15 C -0.048 4.048 16 C 0.054 3.946 17 N -0.524 5.524 18 C 0.056 3.944 19 C 0.020 3.980 20 N -0.848 5.848 21 C 0.103 3.897 22 H 0.280 0.720 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.338 0.662 35 H 0.339 0.661 36 H 0.033 0.967 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.276 -7.932 4.417 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.109 3.891 10 C -0.185 4.185 11 C -0.125 4.125 12 C -0.256 4.256 13 C -0.062 4.062 14 C -0.173 4.173 15 C -0.085 4.085 16 C -0.073 4.073 17 N -0.247 5.247 18 C -0.073 4.073 19 C -0.113 4.113 20 N -0.377 5.377 21 C -0.025 4.025 22 H 0.090 0.910 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.051 0.949 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.140 -7.954 3.327 9.564 hybrid contribution -0.122 1.179 1.545 1.947 sum 4.018 -6.775 4.872 9.262 Atomic orbital electron populations 1.69824 1.07558 1.29143 1.35558 1.25890 0.94673 1.01164 0.92333 0.86424 0.80177 0.80484 0.79954 1.18851 1.20443 1.19069 1.19525 0.97861 0.91046 1.40637 0.90348 1.17522 0.91292 0.91405 0.88925 1.21246 0.99485 0.96666 1.01124 1.20572 0.98715 0.93340 0.99846 1.20188 1.01343 0.96280 1.07812 1.18931 0.96201 0.92329 0.98723 1.19300 1.00431 0.92684 1.04906 1.20120 0.96781 0.94223 0.97371 1.22213 0.99405 0.92514 0.93196 1.62556 1.23726 1.03167 1.35292 1.22209 0.98580 0.92097 0.94425 1.22602 1.01294 0.89733 0.97647 1.58707 1.09454 1.33371 1.36186 1.20881 0.87146 0.96414 0.98023 0.90955 0.86580 0.89540 0.89734 0.92312 0.91317 0.94978 0.91857 0.90244 0.91180 0.95211 0.90828 0.84980 0.84947 0.94865 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.59 10.97 55.55 0.61 -19.98 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.04 8.12 -37.74 -0.31 -12.35 16 8 H 0.08 1.96 6.99 -52.49 -0.37 1.59 16 9 C 0.11 2.95 5.58 -106.74 -0.60 2.35 16 10 C -0.17 -4.37 8.68 -38.94 -0.34 -4.71 16 11 C -0.11 -2.55 10.02 -39.74 -0.40 -2.95 16 12 C -0.24 -5.41 9.65 -39.17 -0.38 -5.79 16 13 C -0.06 -1.39 5.79 -104.66 -0.61 -2.00 16 14 C -0.17 -4.15 5.83 -103.91 -0.61 -4.76 16 15 C -0.05 -0.99 4.94 -27.95 -0.14 -1.13 16 16 C 0.05 0.94 4.58 -3.73 -0.02 0.93 16 17 N -0.52 -8.99 4.90 -236.17 -1.16 -10.15 16 18 C 0.06 0.76 5.58 -3.82 -0.02 0.74 16 19 C 0.02 0.25 6.09 -3.82 -0.02 0.22 16 20 N -0.85 -8.75 9.62 -10.37 -0.10 -8.85 16 21 C 0.10 1.91 5.06 -5.15 -0.03 1.88 16 22 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 23 H 0.12 3.15 6.19 -52.48 -0.32 2.83 16 24 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 25 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.45 7.34 -51.93 -0.38 1.07 16 28 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 29 H 0.06 0.95 8.03 -51.93 -0.42 0.54 16 30 H 0.08 1.09 8.12 -51.93 -0.42 0.66 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.03 0.38 6.70 -51.93 -0.35 0.03 16 33 H 0.07 1.02 6.46 -51.93 -0.34 0.68 16 34 H 0.34 2.95 8.99 -39.29 -0.35 2.60 16 35 H 0.34 2.96 9.08 -39.29 -0.36 2.61 16 36 H 0.03 0.60 6.26 -51.93 -0.33 0.27 16 37 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -27.64 291.52 -10.07 -37.71 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.25 Total: 9.00 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -3.54 Total: -25.74 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.65 Total: -38.98 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.64 -10.07 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600747779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.098 kcal (2) G-P(sol) polarization free energy of solvation -27.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds