Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86794 * 120.00086 * 2 1 4 4 H 1.48504 * 109.47526 * 239.99766 * 3 2 1 5 5 H 1.48507 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47259 * 119.99645 * 3 2 1 7 7 C 1.39950 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 197.08842 * 7 2 1 9 9 C 1.41395 * 119.99823 * 17.37123 * 7 2 1 10 10 C 1.40562 * 120.08209 * 25.17197 * 9 7 2 11 11 C 1.37600 * 119.54387 * 179.84601 * 10 9 7 12 12 C 1.38433 * 120.14026 * 0.61326 * 11 10 9 13 13 C 1.39147 * 120.91571 * 359.66711 * 12 11 10 14 14 C 1.37246 * 119.86805 * 359.85236 * 13 12 11 15 15 C 1.50683 * 121.80775 * 180.60517 * 14 13 12 16 16 C 1.52896 * 109.98401 * 343.03837 * 15 14 13 17 17 N 1.47174 * 108.47069 * 50.24670 * 16 15 14 18 18 C 1.46903 * 110.99726 * 165.52936 * 17 16 15 19 19 C 1.52997 * 109.47257 * 56.92537 * 18 17 16 20 20 N 1.46901 * 109.46907 * 179.97438 * 19 18 17 21 21 C 1.46616 * 110.23438 * 288.93584 * 17 16 15 22 22 H 0.96993 * 120.00147 * 0.02562 * 1 2 3 23 23 H 1.08005 * 120.23250 * 0.12492 * 10 9 7 24 24 H 1.07998 * 119.93161 * 180.32473 * 11 10 9 25 25 H 1.07995 * 119.54378 * 179.64867 * 12 11 10 26 26 H 1.09004 * 109.38414 * 103.19294 * 15 14 13 27 27 H 1.08999 * 109.38735 * 222.87950 * 15 14 13 28 28 H 1.08997 * 109.63720 * 290.55084 * 16 15 14 29 29 H 1.09003 * 109.80275 * 170.03976 * 16 15 14 30 30 H 1.09001 * 109.46657 * 176.92420 * 18 17 16 31 31 H 1.09003 * 109.46904 * 296.92240 * 18 17 16 32 32 H 1.09001 * 109.47192 * 299.99556 * 19 18 17 33 33 H 1.09003 * 109.47406 * 60.00010 * 19 18 17 34 34 H 1.00899 * 111.00010 * 56.04512 * 20 19 18 35 35 H 1.00900 * 110.99716 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.26685 * 292.30277 * 21 17 16 37 37 H 1.08997 * 109.23412 * 172.81854 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0080 -1.2120 0.0005 8 1 3.0523 -1.2325 0.2754 9 6 1.3494 -2.4087 -0.3645 10 6 0.2234 -2.3652 -1.2048 11 6 -0.4071 -3.5368 -1.5556 12 6 0.0581 -4.7480 -1.0730 13 6 1.1680 -4.8052 -0.2357 14 6 1.8173 -3.6490 0.1184 15 6 3.0310 -3.6614 1.0113 16 6 3.1261 -4.9992 1.7454 17 7 2.9978 -6.0830 0.7580 18 6 3.4175 -7.3691 1.3306 19 6 2.5910 -7.6634 2.5840 20 7 3.0103 -8.9497 3.1561 21 6 1.6209 -6.1542 0.2592 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1417 -1.4190 -1.5762 24 1 -1.2696 -3.5110 -2.2051 25 1 -0.4476 -5.6612 -1.3500 26 1 3.9263 -3.5160 0.4068 27 1 2.9528 -2.8539 1.7393 28 1 2.3218 -5.0734 2.4773 29 1 4.0891 -5.0757 2.2503 30 1 3.2613 -8.1611 0.5981 31 1 4.4740 -7.3217 1.5948 32 1 2.7472 -6.8714 3.3165 33 1 1.5345 -7.7108 2.3198 34 1 4.0006 -8.9538 3.3498 35 1 2.4790 -9.1667 3.9860 36 1 0.9632 -6.4813 1.0645 37 1 1.5722 -6.8724 -0.5592 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600747779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -3.104261 kcal Electronic energy + Delta-G solvation = -17827.595453 eV Core-core repulsion = 15181.780974 eV Total energy + Delta-G solvation = -2645.814479 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69983 -38.49339 -35.74563 -35.15977 -33.34358 -31.87952 -30.34270 -27.92415 -27.00076 -25.14999 -24.27684 -22.35439 -22.29048 -19.79642 -18.82711 -17.46339 -16.92588 -16.70876 -16.36972 -16.20140 -15.40740 -15.27141 -14.99169 -14.81553 -14.36945 -14.07727 -13.57602 -13.38719 -13.19029 -13.01447 -12.77973 -12.72352 -12.53788 -12.35727 -12.10774 -12.00116 -11.74754 -11.17067 -11.01792 -10.91759 -9.71678 -9.33711 -9.12685 -8.92220 -8.58968 -6.28590 1.00834 1.11791 1.38204 1.48830 1.54928 2.21596 2.75370 2.99465 3.68961 3.71403 3.99558 4.05315 4.13708 4.30088 4.41693 4.47006 4.54265 4.60801 4.65663 4.70073 4.75566 4.92540 5.05878 5.12846 5.14807 5.22505 5.28502 5.36840 5.54580 5.80212 5.96757 6.08871 6.11835 6.21813 6.24173 6.26294 6.48351 6.57016 6.75125 6.99900 7.11095 8.37238 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031221 B = 0.006105 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.615818 B = 4585.555499 C = 5232.203400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.078 3.922 10 C -0.198 4.198 11 C -0.114 4.114 12 C -0.239 4.239 13 C -0.070 4.070 14 C -0.189 4.189 15 C -0.045 4.045 16 C 0.064 3.936 17 N -0.535 5.535 18 C 0.060 3.940 19 C 0.028 3.972 20 N -0.848 5.848 21 C 0.109 3.891 22 H 0.285 0.715 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.029 0.971 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.060 0.940 34 H 0.349 0.651 35 H 0.349 0.651 36 H 0.044 0.956 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -9.352 5.232 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.520 4.520 8 H 0.097 0.903 9 C 0.076 3.924 10 C -0.217 4.217 11 C -0.133 4.133 12 C -0.259 4.259 13 C -0.070 4.070 14 C -0.190 4.190 15 C -0.082 4.082 16 C -0.063 4.063 17 N -0.259 5.259 18 C -0.068 4.068 19 C -0.105 4.105 20 N -0.380 5.380 21 C -0.018 4.018 22 H 0.096 0.904 23 H 0.115 0.885 24 H 0.124 0.876 25 H 0.131 0.869 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.062 0.938 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.281 -9.404 4.153 11.558 hybrid contribution -0.507 1.491 1.277 2.028 sum 4.774 -7.913 5.431 10.719 Atomic orbital electron populations 1.69895 1.09048 1.30307 1.36277 1.26734 0.95398 1.04404 0.91384 0.85326 0.78814 0.75966 0.80056 1.18704 1.19486 1.18159 1.19752 0.98074 0.92060 1.42120 0.90314 1.17950 0.91965 0.92892 0.89637 1.21228 1.00861 0.96814 1.02831 1.20848 0.99158 0.93229 1.00025 1.20589 1.01342 0.96828 1.07111 1.19454 0.95666 0.94005 0.97863 1.19762 1.01576 0.92495 1.05196 1.20079 0.95113 0.96265 0.96773 1.22100 1.00866 0.90704 0.92667 1.62499 1.22674 1.04759 1.35923 1.22234 0.99562 0.90178 0.94835 1.22402 1.00219 0.90670 0.97166 1.58648 1.10489 1.31910 1.36938 1.20813 0.88326 0.93933 0.98773 0.90417 0.88528 0.87600 0.86851 0.92705 0.92485 0.95258 0.88989 0.89964 0.89488 0.95442 0.92199 0.83735 0.83802 0.93840 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.40 10.97 21.83 0.24 -44.17 16 2 C 0.04 1.79 5.14 85.26 0.44 2.23 16 3 Si 0.98 38.79 29.59 68.60 2.03 40.82 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.49 -26.54 8.12 23.46 0.19 -26.35 16 8 H 0.08 4.08 6.99 -2.91 -0.02 4.06 16 9 C 0.08 4.28 5.58 -21.24 -0.12 4.16 16 10 C -0.20 -10.85 8.68 22.69 0.20 -10.66 16 11 C -0.11 -5.56 10.02 22.17 0.22 -5.34 16 12 C -0.24 -10.74 9.65 22.53 0.22 -10.52 16 13 C -0.07 -3.10 5.79 -19.89 -0.12 -3.22 16 14 C -0.19 -9.25 5.83 -19.40 -0.11 -9.36 16 15 C -0.04 -1.87 4.94 29.81 0.15 -1.72 16 16 C 0.06 2.11 4.58 86.22 0.39 2.50 16 17 N -0.54 -17.00 4.90 -901.10 -4.41 -21.42 16 18 C 0.06 1.44 5.58 86.30 0.48 1.92 16 19 C 0.03 0.62 6.09 86.30 0.53 1.15 16 20 N -0.85 -14.83 9.62 -186.71 -1.80 -16.63 16 21 C 0.11 3.81 5.06 85.60 0.43 4.25 16 22 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 23 H 0.10 5.55 6.19 -2.91 -0.02 5.53 16 24 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 25 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 26 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.06 2.46 7.34 -2.39 -0.02 2.44 16 28 H 0.03 0.98 7.07 -2.39 -0.02 0.96 16 29 H 0.09 2.49 8.03 -2.39 -0.02 2.47 16 30 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.03 0.62 6.70 -2.39 -0.02 0.61 16 33 H 0.06 1.50 6.46 -2.39 -0.02 1.48 16 34 H 0.35 4.90 8.99 -89.69 -0.81 4.09 16 35 H 0.35 5.09 9.08 -89.69 -0.81 4.27 16 36 H 0.04 1.46 6.26 -2.39 -0.01 1.44 16 37 H 0.09 2.79 8.13 -2.39 -0.02 2.77 16 Total: -1.00 -60.75 291.52 -1.57 -62.32 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.53 Total: 30.02 kcal Atomic # 6 Polarization: -53.85 SS G_CDS: 2.90 Total: -50.95 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -5.97 Total: -82.21 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -60.75 -1.57 -62.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600747779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.221 kcal (2) G-P(sol) polarization free energy of solvation -60.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds