Wall clock time and date at job start Mon Mar 30 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47420 * 2 1 4 4 N 1.46491 * 109.47282 * 239.99323 * 2 1 3 5 5 C 1.39686 * 120.00265 * 85.00199 * 4 2 1 6 6 C 1.39336 * 119.94848 * 0.02562 * 5 4 2 7 7 C 1.38482 * 120.42379 * 179.97438 * 6 5 4 8 8 C 1.37683 * 120.32280 * 0.02562 * 7 6 5 9 9 C 1.40741 * 119.89590 * 0.02562 * 8 7 6 10 10 C 1.41410 * 120.20715 * 179.72303 * 9 8 7 11 11 H 1.08004 * 119.99829 * 331.94726 * 10 9 8 12 12 C 1.39927 * 120.00184 * 151.94602 * 10 9 8 13 13 N 1.30826 * 119.99897 * 346.68294 * 12 10 9 14 14 Si 1.86805 * 120.00126 * 166.68439 * 12 10 9 15 15 H 1.48504 * 109.46991 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47277 * 119.99921 * 14 12 10 17 17 H 1.48501 * 109.46983 * 240.00116 * 14 12 10 18 18 C 1.38281 * 119.95669 * 180.02562 * 5 4 2 19 19 C 1.53004 * 109.46846 * 119.99353 * 2 1 3 20 20 C 1.53937 * 113.73519 * 281.93065 * 19 2 1 21 21 N 1.48189 * 86.10310 * 221.95770 * 20 19 2 22 22 C 1.47967 * 90.79935 * 24.59909 * 21 20 19 23 23 H 1.09002 * 109.46917 * 64.89980 * 1 2 3 24 24 H 1.08995 * 109.47284 * 184.89902 * 1 2 3 25 25 H 1.08999 * 109.47321 * 304.90457 * 1 2 3 26 26 H 0.97004 * 120.00128 * 264.99659 * 4 2 1 27 27 H 1.08000 * 119.78860 * 359.97438 * 6 5 4 28 28 H 1.07997 * 119.83514 * 180.02562 * 7 6 5 29 29 H 1.08004 * 120.04943 * 180.02562 * 8 7 6 30 30 H 0.97007 * 120.00186 * 179.97438 * 13 12 10 31 31 H 1.08003 * 120.16054 * 0.02562 * 18 5 4 32 32 H 1.08996 * 112.94043 * 53.50028 * 19 2 1 33 33 H 1.08998 * 113.75890 * 336.23989 * 20 19 2 34 34 H 1.09003 * 113.75447 * 107.60157 * 20 19 2 35 35 H 1.00896 * 111.06994 * 137.51888 * 21 20 19 36 36 H 1.08991 * 113.76358 * 221.08566 * 22 21 20 37 37 H 1.08997 * 113.85484 * 89.73043 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1518 0.0060 -2.3994 6 6 1.8207 1.3580 -2.4608 7 6 1.9497 2.0583 -3.6485 8 6 2.4066 1.4253 -4.7826 9 6 2.7439 0.0597 -4.7361 10 6 3.2083 -0.5984 -5.8984 11 1 2.9007 -0.2524 -6.8742 12 6 4.0663 -1.6979 -5.7843 13 7 4.6457 -1.9596 -4.6409 14 14 4.3844 -2.7920 -7.2647 15 1 3.6145 -2.2854 -8.4291 16 1 5.8341 -2.7806 -7.5862 17 1 3.9568 -4.1801 -6.9552 18 6 2.6124 -0.6471 -3.5279 19 6 2.0399 -0.7211 1.2494 20 6 1.9718 0.1324 2.5286 21 7 3.3098 -0.4195 2.8469 22 6 3.5699 -0.6716 1.4123 23 1 -0.3633 0.4360 -0.9306 24 1 -0.3633 -1.0239 0.0878 25 1 -0.3634 0.5880 0.8428 26 1 2.2491 -1.6319 -1.1523 27 1 1.4610 1.8630 -1.5765 28 1 1.6907 3.1061 -3.6853 29 1 2.5059 1.9759 -5.7065 30 1 5.2402 -2.7220 -4.5617 31 1 2.8690 -1.6952 -3.4816 32 1 1.6186 -1.7197 1.3653 33 1 1.9729 1.2060 2.3408 34 1 1.1908 -0.1783 3.2227 35 1 3.9223 0.2980 3.2048 36 1 4.0635 -1.6233 1.2161 37 1 4.0396 0.1654 0.8957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686252005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:21 Heat of formation + Delta-G solvation = 45.691836 kcal Electronic energy + Delta-G solvation = -17547.962398 eV Core-core repulsion = 14904.263876 eV Total energy + Delta-G solvation = -2643.698522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.69815 -37.69685 -35.17665 -33.30942 -30.89670 -29.41734 -27.23471 -26.74953 -25.77578 -25.14371 -22.03173 -21.05128 -19.75909 -19.42286 -17.20026 -16.69636 -15.70319 -15.42075 -14.79097 -14.48922 -14.31950 -13.67387 -13.22915 -12.88113 -12.69227 -12.53930 -12.33863 -12.17251 -11.68134 -11.60049 -11.21402 -11.00632 -10.91477 -10.75989 -10.49701 -10.41966 -10.32563 -9.59705 -9.40472 -9.25675 -9.00509 -8.73556 -7.25463 -6.67111 -6.13654 -4.30120 2.88062 3.12244 3.17786 3.23837 3.34280 4.00951 4.03628 4.13115 4.64916 4.77046 4.86163 5.28195 5.37172 5.41546 5.52765 5.61017 5.76829 5.85963 5.89419 5.91663 6.01721 6.13538 6.28987 6.30218 6.49960 6.63495 6.90077 7.12276 7.15256 7.17494 7.40632 7.46860 7.83377 7.97323 8.12307 8.20834 8.52638 8.73481 8.87215 9.04020 9.13837 10.32045 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.005726 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.282522 B = 4889.228321 C = 5519.572995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.165 3.835 3 H 0.071 0.929 4 N -0.753 5.753 5 C 0.217 3.783 6 C -0.298 4.298 7 C -0.069 4.069 8 C -0.255 4.255 9 C 0.139 3.861 10 C -0.466 4.466 11 H 0.075 0.925 12 C 0.076 3.924 13 N -0.799 5.799 14 Si 0.905 3.095 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.274 1.274 18 C -0.225 4.225 19 C -0.120 4.120 20 C 0.013 3.987 21 N -0.641 5.641 22 C 0.015 3.985 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.389 0.611 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.276 0.724 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.316 0.684 36 H 0.086 0.914 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 1.223 10.043 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.089 0.911 4 N -0.385 5.385 5 C 0.118 3.882 6 C -0.320 4.320 7 C -0.088 4.088 8 C -0.276 4.276 9 C 0.136 3.864 10 C -0.497 4.497 11 H 0.093 0.907 12 C -0.140 4.140 13 N -0.425 5.425 14 Si 0.730 3.270 15 H -0.185 1.185 16 H -0.202 1.202 17 H -0.199 1.199 18 C -0.249 4.249 19 C -0.140 4.140 20 C -0.117 4.117 21 N -0.265 5.265 22 C -0.115 4.115 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.222 0.778 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.470 0.445 10.633 11.194 hybrid contribution 0.514 0.060 -1.027 1.151 sum -2.956 0.505 9.606 10.063 Atomic orbital electron populations 1.22274 0.96811 1.01530 1.01809 1.20659 0.93052 0.96261 0.84212 0.91078 1.44423 1.75609 1.11600 1.06886 1.17641 0.94361 0.90982 0.85196 1.19915 1.20628 0.93802 0.97680 1.20291 0.98382 0.96814 0.93264 1.20898 1.14270 0.95300 0.97112 1.17333 0.86642 0.90005 0.92406 1.19573 1.25116 1.10998 0.93987 0.90660 1.25843 0.94263 0.97008 0.96886 1.69850 1.22041 1.25116 1.25537 0.86324 0.78581 0.79962 0.82154 1.18548 1.20152 1.19929 1.20737 1.11946 1.00076 0.92171 1.23285 0.96159 1.00382 0.94158 1.23711 0.93710 0.97848 0.96480 1.66932 1.04024 1.38782 1.16799 1.23650 0.96557 1.02585 0.88709 0.91793 0.92961 0.92974 0.77789 0.89616 0.89725 0.89426 0.91366 0.86575 0.88479 0.91483 0.89595 0.87221 0.89545 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.37 37.16 0.35 -1.91 16 2 C 0.17 2.44 1.98 -67.93 -0.13 2.30 16 3 H 0.07 1.13 6.38 -51.93 -0.33 0.79 16 4 N -0.75 -13.79 5.11 -52.22 -0.27 -14.05 16 5 C 0.22 4.93 6.63 -83.86 -0.56 4.38 16 6 C -0.30 -6.63 8.86 -39.08 -0.35 -6.98 16 7 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 8 C -0.26 -6.45 9.79 -38.84 -0.38 -6.83 16 9 C 0.14 3.78 5.54 -106.86 -0.59 3.19 16 10 C -0.47 -12.65 9.06 -37.74 -0.34 -12.99 16 11 H 0.08 1.98 7.88 -52.48 -0.41 1.57 16 12 C 0.08 1.95 5.21 -17.35 -0.09 1.86 16 13 N -0.80 -20.93 10.94 55.55 0.61 -20.32 16 14 Si 0.90 19.07 29.58 -169.99 -5.03 14.04 16 15 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 16 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 C -0.23 -5.84 8.50 -38.68 -0.33 -6.17 16 19 C -0.12 -1.51 3.35 -89.68 -0.30 -1.81 16 20 C 0.01 0.14 8.42 -2.63 -0.02 0.12 16 21 N -0.64 -7.55 8.53 -116.81 -1.00 -8.55 16 22 C 0.02 0.20 8.34 -2.75 -0.02 0.17 16 23 H 0.06 1.01 7.80 -51.93 -0.41 0.60 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.39 6.94 8.61 -40.82 -0.35 6.58 16 27 H 0.09 1.72 6.18 -52.49 -0.32 1.39 16 28 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.09 2.11 8.06 -52.48 -0.42 1.68 16 30 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 31 H 0.12 3.12 6.27 -52.48 -0.33 2.79 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 0.67 8.03 -51.93 -0.42 0.26 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.32 3.24 8.92 -39.29 -0.35 2.89 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -27.85 303.83 -9.71 -37.55 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -5.44 Total: 13.39 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -3.16 Total: -26.64 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.66 Total: -42.93 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.85 -9.71 -37.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686252005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.246 kcal (2) G-P(sol) polarization free energy of solvation -27.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds