Wall clock time and date at job start Mon Mar 30 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47420 * 2 1 4 4 N 1.46491 * 109.47282 * 239.99323 * 2 1 3 5 5 C 1.39686 * 120.00265 * 85.00199 * 4 2 1 6 6 C 1.39336 * 119.94848 * 0.02562 * 5 4 2 7 7 C 1.38482 * 120.42379 * 179.97438 * 6 5 4 8 8 C 1.37683 * 120.32280 * 0.02562 * 7 6 5 9 9 C 1.40741 * 119.89590 * 0.02562 * 8 7 6 10 10 C 1.41410 * 120.20715 * 179.72303 * 9 8 7 11 11 H 1.08004 * 119.99829 * 331.94726 * 10 9 8 12 12 C 1.39927 * 120.00184 * 151.94602 * 10 9 8 13 13 N 1.30826 * 119.99897 * 346.68294 * 12 10 9 14 14 Si 1.86805 * 120.00126 * 166.68439 * 12 10 9 15 15 H 1.48504 * 109.46991 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47277 * 119.99921 * 14 12 10 17 17 H 1.48501 * 109.46983 * 240.00116 * 14 12 10 18 18 C 1.38281 * 119.95669 * 180.02562 * 5 4 2 19 19 C 1.53004 * 109.46846 * 119.99353 * 2 1 3 20 20 C 1.53937 * 113.73519 * 281.93065 * 19 2 1 21 21 N 1.48189 * 86.10310 * 221.95770 * 20 19 2 22 22 C 1.47967 * 90.79935 * 24.59909 * 21 20 19 23 23 H 1.09002 * 109.46917 * 64.89980 * 1 2 3 24 24 H 1.08995 * 109.47284 * 184.89902 * 1 2 3 25 25 H 1.08999 * 109.47321 * 304.90457 * 1 2 3 26 26 H 0.97004 * 120.00128 * 264.99659 * 4 2 1 27 27 H 1.08000 * 119.78860 * 359.97438 * 6 5 4 28 28 H 1.07997 * 119.83514 * 180.02562 * 7 6 5 29 29 H 1.08004 * 120.04943 * 180.02562 * 8 7 6 30 30 H 0.97007 * 120.00186 * 179.97438 * 13 12 10 31 31 H 1.08003 * 120.16054 * 0.02562 * 18 5 4 32 32 H 1.08996 * 112.94043 * 53.50028 * 19 2 1 33 33 H 1.08998 * 113.75890 * 336.23989 * 20 19 2 34 34 H 1.09003 * 113.75447 * 107.60157 * 20 19 2 35 35 H 1.00896 * 111.06994 * 137.51888 * 21 20 19 36 36 H 1.08991 * 113.76358 * 221.08566 * 22 21 20 37 37 H 1.08997 * 113.85484 * 89.73043 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1518 0.0060 -2.3994 6 6 1.8207 1.3580 -2.4608 7 6 1.9497 2.0583 -3.6485 8 6 2.4066 1.4253 -4.7826 9 6 2.7439 0.0597 -4.7361 10 6 3.2083 -0.5984 -5.8984 11 1 2.9007 -0.2524 -6.8742 12 6 4.0663 -1.6979 -5.7843 13 7 4.6457 -1.9596 -4.6409 14 14 4.3844 -2.7920 -7.2647 15 1 3.6145 -2.2854 -8.4291 16 1 5.8341 -2.7806 -7.5862 17 1 3.9568 -4.1801 -6.9552 18 6 2.6124 -0.6471 -3.5279 19 6 2.0399 -0.7211 1.2494 20 6 1.9718 0.1324 2.5286 21 7 3.3098 -0.4195 2.8469 22 6 3.5699 -0.6716 1.4123 23 1 -0.3633 0.4360 -0.9306 24 1 -0.3633 -1.0239 0.0878 25 1 -0.3634 0.5880 0.8428 26 1 2.2491 -1.6319 -1.1523 27 1 1.4610 1.8630 -1.5765 28 1 1.6907 3.1061 -3.6853 29 1 2.5059 1.9759 -5.7065 30 1 5.2402 -2.7220 -4.5617 31 1 2.8690 -1.6952 -3.4816 32 1 1.6186 -1.7197 1.3653 33 1 1.9729 1.2060 2.3408 34 1 1.1908 -0.1783 3.2227 35 1 3.9223 0.2980 3.2048 36 1 4.0635 -1.6233 1.2161 37 1 4.0396 0.1654 0.8957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686252005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:21 Heat of formation + Delta-G solvation = 27.613851 kcal Electronic energy + Delta-G solvation = -17548.746318 eV Core-core repulsion = 14904.263876 eV Total energy + Delta-G solvation = -2644.482442 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78508 -39.40170 -36.72036 -35.14848 -32.36890 -31.32980 -28.75757 -27.89633 -27.06037 -26.75678 -23.42640 -22.79252 -21.46437 -20.51658 -19.05145 -17.98665 -17.13118 -16.83188 -16.41785 -16.18841 -15.66159 -14.84537 -14.75936 -14.53436 -14.01925 -13.98434 -13.79467 -13.45844 -13.36377 -12.88675 -12.77975 -12.70950 -12.53787 -12.10674 -11.88541 -11.81333 -11.55339 -11.42985 -11.23636 -11.06812 -10.49556 -9.90710 -9.19557 -8.57559 -7.86476 -6.32190 1.09420 1.34834 1.38862 1.53320 1.57242 2.24352 2.72778 2.85900 3.13028 3.60659 3.74013 3.87533 4.25528 4.36773 4.39233 4.43753 4.53928 4.61797 4.77917 4.83371 4.85223 4.88061 5.02102 5.03239 5.08871 5.21755 5.22676 5.32865 5.42255 5.50216 5.63609 5.98325 6.12288 6.23413 6.27989 6.29429 6.61618 6.97386 7.07620 7.09407 7.27442 8.42931 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.005726 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.282522 B = 4889.228321 C = 5519.572995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.066 0.934 4 N -0.746 5.746 5 C 0.225 3.775 6 C -0.297 4.297 7 C -0.065 4.065 8 C -0.284 4.284 9 C 0.108 3.892 10 C -0.506 4.506 11 H 0.069 0.931 12 C 0.036 3.964 13 N -0.829 5.829 14 Si 0.979 3.021 15 H -0.261 1.261 16 H -0.267 1.267 17 H -0.265 1.265 18 C -0.254 4.254 19 C -0.115 4.115 20 C 0.023 3.977 21 N -0.645 5.645 22 C 0.012 3.988 23 H 0.041 0.959 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.390 0.610 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.283 0.717 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.326 0.674 36 H 0.077 0.923 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 1.459 11.630 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.059 3.941 3 H 0.084 0.916 4 N -0.377 5.377 5 C 0.123 3.877 6 C -0.319 4.319 7 C -0.084 4.084 8 C -0.305 4.305 9 C 0.105 3.895 10 C -0.536 4.536 11 H 0.087 0.913 12 C -0.178 4.178 13 N -0.455 5.455 14 Si 0.801 3.199 15 H -0.184 1.184 16 H -0.192 1.192 17 H -0.190 1.190 18 C -0.278 4.278 19 C -0.135 4.135 20 C -0.107 4.107 21 N -0.271 5.271 22 C -0.119 4.119 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.223 0.777 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.170 0.691 12.271 12.979 hybrid contribution 0.691 0.053 -1.363 1.529 sum -3.479 0.744 10.908 11.473 Atomic orbital electron populations 1.22203 0.95447 1.02231 1.01921 1.20866 0.93950 0.95840 0.83467 0.91565 1.44553 1.74740 1.11684 1.06714 1.17719 0.92637 0.91469 0.85835 1.20251 1.19635 0.93539 0.98498 1.20659 0.96796 0.98389 0.92568 1.21047 1.16091 0.95037 0.98304 1.17716 0.87421 0.91160 0.93163 1.19810 1.26909 1.12995 0.93924 0.91267 1.26660 0.93404 0.97738 0.99993 1.69912 1.22415 1.25756 1.27448 0.85209 0.78678 0.77885 0.78175 1.18427 1.19177 1.18993 1.20656 1.14283 0.99492 0.93355 1.23230 0.95541 1.00776 0.93919 1.23758 0.93480 0.98175 0.95297 1.66912 1.04859 1.39663 1.15627 1.23575 0.96844 1.01713 0.89754 0.93981 0.92557 0.89968 0.77677 0.86765 0.86469 0.89383 0.90674 0.88453 0.88207 0.90265 0.87943 0.86111 0.90486 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.37 71.98 0.67 -3.24 16 2 C 0.16 4.49 1.98 44.99 0.09 4.58 16 3 H 0.07 1.91 6.38 -2.39 -0.02 1.89 16 4 N -0.75 -26.84 5.11 -319.13 -1.63 -28.47 16 5 C 0.22 10.23 6.63 38.16 0.25 10.48 16 6 C -0.30 -12.82 8.86 22.59 0.20 -12.62 16 7 C -0.07 -2.95 10.02 22.20 0.22 -2.73 16 8 C -0.28 -14.68 9.79 22.75 0.22 -14.46 16 9 C 0.11 6.11 5.54 -21.31 -0.12 5.99 16 10 C -0.51 -28.62 9.06 23.46 0.21 -28.40 16 11 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 12 C 0.04 1.87 5.21 85.25 0.44 2.31 16 13 N -0.83 -44.67 10.94 21.82 0.24 -44.43 16 14 Si 0.98 39.81 29.58 68.60 2.03 41.84 16 15 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 16 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 18 C -0.25 -13.58 8.50 22.86 0.19 -13.38 16 19 C -0.12 -2.62 3.35 -10.14 -0.03 -2.65 16 20 C 0.02 0.42 8.42 86.37 0.73 1.15 16 21 N -0.65 -13.64 8.53 -523.48 -4.47 -18.11 16 22 C 0.01 0.29 8.34 86.41 0.72 1.01 16 23 H 0.04 1.23 7.80 -2.39 -0.02 1.21 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.39 13.89 8.61 -92.71 -0.80 13.09 16 27 H 0.11 4.25 6.18 -2.91 -0.02 4.23 16 28 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.28 13.81 8.30 -92.70 -0.77 13.04 16 31 H 0.10 5.48 6.27 -2.91 -0.02 5.46 16 32 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 1.28 8.03 -2.39 -0.02 1.26 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.33 5.91 8.92 -89.70 -0.80 5.11 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -61.48 303.83 -0.54 -62.03 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.52 Total: 39.10 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 3.81 Total: -51.96 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -5.86 Total: -91.01 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -61.48 -0.54 -62.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686252005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.643 kcal (2) G-P(sol) polarization free energy of solvation -61.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds