Wall clock time and date at job start Mon Mar 30 2020 04:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46861 * 2 1 4 4 N 1.46498 * 109.47138 * 120.00434 * 2 1 3 5 5 C 1.39689 * 119.99700 * 275.00269 * 4 2 1 6 6 C 1.39336 * 119.95140 * 359.97438 * 5 4 2 7 7 C 1.38471 * 120.42509 * 179.70519 * 6 5 4 8 8 C 1.37691 * 120.32652 * 0.25556 * 7 6 5 9 9 C 1.40753 * 119.88966 * 0.02562 * 8 7 6 10 10 C 1.41412 * 120.20467 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00005 * 24.43602 * 10 9 8 12 12 C 1.39931 * 119.99865 * 204.42745 * 10 9 8 13 13 N 1.30834 * 120.00229 * 17.86785 * 12 10 9 14 14 Si 1.86795 * 120.00066 * 197.86671 * 12 10 9 15 15 H 1.48505 * 109.47161 * 60.00046 * 14 12 10 16 16 H 1.48496 * 109.47583 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47091 * 300.00421 * 14 12 10 18 18 C 1.38284 * 119.95089 * 180.25791 * 5 4 2 19 19 C 1.53001 * 109.47032 * 239.99756 * 2 1 3 20 20 C 1.53936 * 113.73428 * 156.72630 * 19 2 1 21 21 N 1.47956 * 86.18473 * 221.92277 * 20 19 2 22 22 C 1.47969 * 90.76296 * 24.69214 * 21 20 19 23 23 H 1.09001 * 109.46595 * 60.00351 * 1 2 3 24 24 H 1.09006 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46981 * 299.99974 * 1 2 3 26 26 H 0.96998 * 120.00403 * 94.99448 * 4 2 1 27 27 H 1.08004 * 119.78619 * 359.97438 * 6 5 4 28 28 H 1.08000 * 119.84281 * 180.27170 * 7 6 5 29 29 H 1.07995 * 120.05682 * 179.97438 * 8 7 6 30 30 H 0.96996 * 119.99962 * 180.02562 * 13 12 10 31 31 H 1.07994 * 120.16216 * 359.97438 * 18 5 4 32 32 H 1.08999 * 112.94388 * 288.43632 * 19 2 1 33 33 H 1.09000 * 113.75440 * 336.24634 * 20 19 2 34 34 H 1.09001 * 113.75993 * 107.60411 * 20 19 2 35 35 H 1.00899 * 111.00243 * 271.79676 * 21 20 19 36 36 H 1.08996 * 113.75504 * 220.99721 * 22 21 20 37 37 H 1.08988 * 113.76167 * 89.62432 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1517 0.0061 2.3994 6 6 1.8205 1.3582 2.4608 7 6 1.9431 2.0569 3.6499 8 6 2.3991 1.4239 4.7845 9 6 2.7432 0.0599 4.7363 10 6 3.2117 -0.5971 5.8977 11 1 2.9506 -0.2183 6.8748 12 6 4.0135 -1.7379 5.7808 13 7 4.6168 -2.0005 4.6499 14 14 4.2224 -2.8861 7.2393 15 1 2.8966 -3.4193 7.6435 16 1 5.1131 -4.0120 6.8595 17 1 4.8229 -2.1403 8.3744 18 6 2.6178 -0.6455 3.5265 19 6 2.0401 -0.7213 -1.2492 20 6 3.4670 -0.3155 -1.6599 21 7 2.9606 -0.3147 -3.0500 22 6 1.5823 -0.0739 -2.5687 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.2490 -1.6318 1.1526 27 1 1.4617 1.8633 1.5761 28 1 1.6796 3.1036 3.6879 29 1 2.4935 1.9731 5.7095 30 1 5.1722 -2.7915 4.5688 31 1 2.8788 -1.6923 3.4791 32 1 1.8824 -1.7992 -1.2116 33 1 3.7641 0.6696 -1.3001 34 1 4.2153 -1.0839 -1.4655 35 1 3.0437 -1.2304 -3.4657 36 1 0.8246 -0.6494 -3.1005 37 1 1.3281 0.9818 -2.4748 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686252009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:23 Heat of formation + Delta-G solvation = 50.067716 kcal Electronic energy + Delta-G solvation = -17517.845674 eV Core-core repulsion = 14874.336905 eV Total energy + Delta-G solvation = -2643.508769 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84277 -37.71081 -35.18952 -33.33526 -30.86340 -29.41855 -27.23355 -26.49397 -25.76773 -25.13729 -21.96684 -21.14935 -19.88127 -19.62836 -17.21070 -16.55081 -16.00204 -15.21879 -14.84075 -14.39251 -13.98412 -13.77697 -13.25092 -12.71153 -12.66852 -12.51116 -12.34117 -12.16041 -12.13574 -11.65628 -11.36319 -11.08535 -11.02485 -10.72601 -10.56432 -10.40869 -10.35668 -9.60034 -9.41274 -9.23043 -8.80474 -8.51085 -7.28595 -6.71108 -6.13163 -4.29149 2.90080 3.09498 3.13107 3.25671 3.36467 3.93923 3.98891 4.17187 4.59815 4.73537 4.77129 5.25733 5.37663 5.38514 5.58187 5.65404 5.75005 5.77375 5.89220 5.91262 5.98379 6.17222 6.26128 6.31528 6.48739 6.65494 6.91708 7.13746 7.16178 7.20679 7.40920 7.46755 7.84247 7.98733 8.14023 8.19749 8.51735 8.73703 8.86606 9.03655 9.14757 10.27508 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027936 B = 0.005585 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.049391 B = 5012.467500 C = 5612.687119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.167 3.833 3 H 0.075 0.925 4 N -0.754 5.754 5 C 0.218 3.782 6 C -0.300 4.300 7 C -0.066 4.066 8 C -0.259 4.259 9 C 0.139 3.861 10 C -0.466 4.466 11 H 0.075 0.925 12 C 0.078 3.922 13 N -0.793 5.793 14 Si 0.904 3.096 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.232 4.232 19 C -0.162 4.162 20 C 0.027 3.973 21 N -0.665 5.665 22 C 0.027 3.973 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.387 0.613 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.277 0.723 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.333 0.667 36 H 0.070 0.930 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 -0.820 -10.245 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.093 0.907 4 N -0.386 5.386 5 C 0.119 3.881 6 C -0.323 4.323 7 C -0.085 4.085 8 C -0.279 4.279 9 C 0.136 3.864 10 C -0.496 4.496 11 H 0.093 0.907 12 C -0.139 4.139 13 N -0.419 5.419 14 Si 0.729 3.271 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.256 4.256 19 C -0.182 4.182 20 C -0.103 4.103 21 N -0.291 5.291 22 C -0.103 4.103 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.220 0.780 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.725 -0.111 -10.850 11.472 hybrid contribution -0.085 -1.846 1.135 2.169 sum -3.810 -1.957 -9.714 10.617 Atomic orbital electron populations 1.22284 0.96989 1.01578 1.01641 1.20640 0.92867 0.96566 0.83971 0.90661 1.44468 1.75679 1.11444 1.07050 1.17635 0.94241 0.91017 0.85171 1.19902 1.20904 0.93791 0.97660 1.20286 0.98203 0.96805 0.93220 1.20856 1.14636 0.95306 0.97110 1.17314 0.86757 0.90024 0.92290 1.19525 1.27444 1.08632 0.93981 0.90665 1.25862 0.93638 0.97567 0.96810 1.69862 1.21519 1.24326 1.26165 0.86451 0.78998 0.79662 0.82037 1.18953 1.20505 1.19078 1.20715 1.12549 1.00127 0.92223 1.24500 0.97012 1.00776 0.95943 1.23660 0.95652 1.02623 0.88336 1.65084 1.10104 1.34559 1.19357 1.23618 0.91912 1.01770 0.93023 0.92891 0.93136 0.91849 0.78010 0.89572 0.89716 0.89468 0.91204 0.86630 0.89244 0.88267 0.90984 0.85292 0.91133 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.23 37.16 0.34 -1.93 16 2 C 0.17 2.47 2.11 -67.93 -0.14 2.32 16 3 H 0.08 1.22 6.26 -51.93 -0.33 0.89 16 4 N -0.75 -13.88 5.25 -52.21 -0.27 -14.16 16 5 C 0.22 5.00 6.63 -83.85 -0.56 4.45 16 6 C -0.30 -6.76 8.86 -39.09 -0.35 -7.11 16 7 C -0.07 -1.54 10.01 -39.70 -0.40 -1.94 16 8 C -0.26 -6.58 9.79 -38.83 -0.38 -6.96 16 9 C 0.14 3.80 5.57 -106.85 -0.60 3.21 16 10 C -0.47 -12.65 9.05 -37.74 -0.34 -12.99 16 11 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 12 C 0.08 2.00 5.14 -17.34 -0.09 1.92 16 13 N -0.79 -20.72 10.96 55.55 0.61 -20.12 16 14 Si 0.90 18.97 29.59 -169.99 -5.03 13.94 16 15 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 C -0.23 -6.05 8.53 -38.67 -0.33 -6.38 16 19 C -0.16 -1.94 3.48 -89.68 -0.31 -2.25 16 20 C 0.03 0.34 8.46 -2.77 -0.02 0.31 16 21 N -0.66 -7.53 8.55 -117.00 -1.00 -8.53 16 22 C 0.03 0.28 7.52 -2.76 -0.02 0.26 16 23 H 0.05 0.60 7.43 -51.93 -0.39 0.21 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.00 7.70 -51.93 -0.40 0.60 16 26 H 0.39 6.88 8.61 -40.82 -0.35 6.53 16 27 H 0.09 1.75 6.08 -52.48 -0.32 1.43 16 28 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.37 7.96 -51.93 -0.41 0.96 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.33 3.20 8.89 -39.29 -0.35 2.85 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.10 1.04 8.06 -51.94 -0.42 0.62 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -28.02 302.07 -9.71 -37.73 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -5.37 Total: 13.66 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -3.19 Total: -27.08 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.67 Total: -42.80 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.02 -9.71 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686252009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.800 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds