Wall clock time and date at job start Mon Mar 30 2020 04:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46861 * 2 1 4 4 N 1.46498 * 109.47138 * 120.00434 * 2 1 3 5 5 C 1.39689 * 119.99700 * 275.00269 * 4 2 1 6 6 C 1.39336 * 119.95140 * 359.97438 * 5 4 2 7 7 C 1.38471 * 120.42509 * 179.70519 * 6 5 4 8 8 C 1.37691 * 120.32652 * 0.25556 * 7 6 5 9 9 C 1.40753 * 119.88966 * 0.02562 * 8 7 6 10 10 C 1.41412 * 120.20467 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00005 * 24.43602 * 10 9 8 12 12 C 1.39931 * 119.99865 * 204.42745 * 10 9 8 13 13 N 1.30834 * 120.00229 * 17.86785 * 12 10 9 14 14 Si 1.86795 * 120.00066 * 197.86671 * 12 10 9 15 15 H 1.48505 * 109.47161 * 60.00046 * 14 12 10 16 16 H 1.48496 * 109.47583 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47091 * 300.00421 * 14 12 10 18 18 C 1.38284 * 119.95089 * 180.25791 * 5 4 2 19 19 C 1.53001 * 109.47032 * 239.99756 * 2 1 3 20 20 C 1.53936 * 113.73428 * 156.72630 * 19 2 1 21 21 N 1.47956 * 86.18473 * 221.92277 * 20 19 2 22 22 C 1.47969 * 90.76296 * 24.69214 * 21 20 19 23 23 H 1.09001 * 109.46595 * 60.00351 * 1 2 3 24 24 H 1.09006 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46981 * 299.99974 * 1 2 3 26 26 H 0.96998 * 120.00403 * 94.99448 * 4 2 1 27 27 H 1.08004 * 119.78619 * 359.97438 * 6 5 4 28 28 H 1.08000 * 119.84281 * 180.27170 * 7 6 5 29 29 H 1.07995 * 120.05682 * 179.97438 * 8 7 6 30 30 H 0.96996 * 119.99962 * 180.02562 * 13 12 10 31 31 H 1.07994 * 120.16216 * 359.97438 * 18 5 4 32 32 H 1.08999 * 112.94388 * 288.43632 * 19 2 1 33 33 H 1.09000 * 113.75440 * 336.24634 * 20 19 2 34 34 H 1.09001 * 113.75993 * 107.60411 * 20 19 2 35 35 H 1.00899 * 111.00243 * 271.79676 * 21 20 19 36 36 H 1.08996 * 113.75504 * 220.99721 * 22 21 20 37 37 H 1.08988 * 113.76167 * 89.62432 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1517 0.0061 2.3994 6 6 1.8205 1.3582 2.4608 7 6 1.9431 2.0569 3.6499 8 6 2.3991 1.4239 4.7845 9 6 2.7432 0.0599 4.7363 10 6 3.2117 -0.5971 5.8977 11 1 2.9506 -0.2183 6.8748 12 6 4.0135 -1.7379 5.7808 13 7 4.6168 -2.0005 4.6499 14 14 4.2224 -2.8861 7.2393 15 1 2.8966 -3.4193 7.6435 16 1 5.1131 -4.0120 6.8595 17 1 4.8229 -2.1403 8.3744 18 6 2.6178 -0.6455 3.5265 19 6 2.0401 -0.7213 -1.2492 20 6 3.4670 -0.3155 -1.6599 21 7 2.9606 -0.3147 -3.0500 22 6 1.5823 -0.0739 -2.5687 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.2490 -1.6318 1.1526 27 1 1.4617 1.8633 1.5761 28 1 1.6796 3.1036 3.6879 29 1 2.4935 1.9731 5.7095 30 1 5.1722 -2.7915 4.5688 31 1 2.8788 -1.6923 3.4791 32 1 1.8824 -1.7992 -1.2116 33 1 3.7641 0.6696 -1.3001 34 1 4.2153 -1.0839 -1.4655 35 1 3.0437 -1.2304 -3.4657 36 1 0.8246 -0.6494 -3.1005 37 1 1.3281 0.9818 -2.4748 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686252009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:23 Heat of formation + Delta-G solvation = 31.644579 kcal Electronic energy + Delta-G solvation = -17518.644561 eV Core-core repulsion = 14874.336905 eV Total energy + Delta-G solvation = -2644.307657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87995 -39.43516 -36.74398 -35.17679 -32.33622 -31.34080 -28.77030 -27.62916 -27.08338 -26.66905 -23.35989 -22.84176 -21.44478 -20.91112 -19.05532 -17.66230 -17.48454 -16.73890 -16.54103 -16.14473 -15.20955 -14.99374 -14.76560 -14.36300 -14.03601 -13.97180 -13.59226 -13.49744 -13.26342 -13.22461 -12.88236 -12.72204 -12.62704 -12.29508 -12.09967 -11.67133 -11.59354 -11.42033 -11.25939 -11.04917 -10.49637 -9.47339 -9.23870 -8.61451 -7.86898 -6.31340 1.10356 1.35205 1.38112 1.49102 1.60060 2.23006 2.74264 2.83436 3.11866 3.54121 3.72727 3.88556 4.23551 4.29969 4.45314 4.53920 4.57408 4.71415 4.75881 4.79081 4.81037 4.90804 5.01653 5.02992 5.08767 5.20461 5.24065 5.33279 5.39564 5.49595 5.62563 5.98048 6.12759 6.22749 6.28939 6.40459 6.59775 6.95846 7.06954 7.09625 7.27737 8.38660 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027936 B = 0.005585 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.049391 B = 5012.467500 C = 5612.687119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.064 0.936 4 N -0.747 5.747 5 C 0.225 3.775 6 C -0.301 4.301 7 C -0.064 4.064 8 C -0.288 4.288 9 C 0.109 3.891 10 C -0.506 4.506 11 H 0.070 0.930 12 C 0.038 3.962 13 N -0.822 5.822 14 Si 0.978 3.022 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.261 1.261 18 C -0.261 4.261 19 C -0.154 4.154 20 C 0.022 3.978 21 N -0.670 5.670 22 C 0.036 3.964 23 H 0.082 0.918 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.389 0.611 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.285 0.715 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.345 0.655 36 H 0.094 0.906 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -1.204 -11.794 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.082 0.918 4 N -0.378 5.378 5 C 0.124 3.876 6 C -0.324 4.324 7 C -0.082 4.082 8 C -0.309 4.309 9 C 0.106 3.894 10 C -0.536 4.536 11 H 0.088 0.912 12 C -0.176 4.176 13 N -0.448 5.448 14 Si 0.799 3.201 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.185 1.185 18 C -0.285 4.285 19 C -0.174 4.174 20 C -0.108 4.108 21 N -0.297 5.297 22 C -0.094 4.094 23 H 0.101 0.899 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.223 0.777 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.160 0.840 36 H 0.113 0.887 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.492 -0.494 -12.450 13.245 hybrid contribution 0.122 -1.657 1.462 2.214 sum -4.370 -2.152 -10.988 12.019 Atomic orbital electron populations 1.22205 0.95590 1.02009 1.02000 1.20861 0.93816 0.96005 0.83504 0.91767 1.44602 1.74804 1.11582 1.06805 1.17723 0.92492 0.91462 0.85914 1.20228 1.20084 0.93642 0.98415 1.20649 0.96686 0.98331 0.92576 1.21008 1.16505 0.95103 0.98252 1.17709 0.87494 0.91135 0.93092 1.19782 1.29274 1.10632 0.93929 0.91152 1.26687 0.92635 0.98435 0.99876 1.69919 1.21805 1.24973 1.28082 0.85323 0.79089 0.77471 0.78193 1.18678 1.19127 1.18504 1.20653 1.14908 0.99636 0.93349 1.24479 0.96628 1.01125 0.95147 1.23597 0.96069 1.01725 0.89433 1.65048 1.10653 1.35563 1.18452 1.23654 0.92046 1.02063 0.91604 0.89876 0.92688 0.94111 0.77730 0.86958 0.86570 0.89409 0.90487 0.88298 0.88326 0.89891 0.91136 0.84014 0.88723 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.23 71.98 0.66 -3.27 16 2 C 0.16 4.53 2.11 44.99 0.09 4.63 16 3 H 0.06 1.95 6.26 -2.39 -0.01 1.94 16 4 N -0.75 -27.00 5.25 -319.11 -1.67 -28.68 16 5 C 0.23 10.39 6.63 38.16 0.25 10.64 16 6 C -0.30 -13.30 8.86 22.59 0.20 -13.10 16 7 C -0.06 -2.93 10.01 22.20 0.22 -2.71 16 8 C -0.29 -15.04 9.79 22.76 0.22 -14.82 16 9 C 0.11 6.16 5.57 -21.31 -0.12 6.04 16 10 C -0.51 -28.63 9.05 23.46 0.21 -28.42 16 11 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 12 C 0.04 2.00 5.14 85.25 0.44 2.44 16 13 N -0.82 -44.04 10.96 21.82 0.24 -43.80 16 14 Si 0.98 39.40 29.59 68.60 2.03 41.44 16 15 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 C -0.26 -14.06 8.53 22.86 0.20 -13.86 16 19 C -0.15 -3.30 3.48 -10.14 -0.04 -3.34 16 20 C 0.02 0.51 8.46 86.41 0.73 1.24 16 21 N -0.67 -13.46 8.55 -524.08 -4.48 -17.95 16 22 C 0.04 0.64 7.52 86.41 0.65 1.29 16 23 H 0.08 1.56 7.43 -2.39 -0.02 1.54 16 24 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.04 1.20 7.70 -2.39 -0.02 1.18 16 26 H 0.39 13.69 8.61 -92.71 -0.80 12.89 16 27 H 0.11 4.33 6.08 -2.91 -0.02 4.31 16 28 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 29 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 31 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.23 7.96 -2.39 -0.02 2.21 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.34 5.65 8.89 -89.69 -0.80 4.85 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.74 8.06 -2.39 -0.02 1.72 16 Total: -1.00 -62.02 302.07 -0.68 -62.69 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.52 Total: 39.52 kcal Atomic # 6 Polarization: -56.96 SS G_CDS: 3.73 Total: -53.23 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -5.92 Total: -90.42 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.44 kcal Total: -62.02 -0.68 -62.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686252009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.339 kcal (2) G-P(sol) polarization free energy of solvation -62.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds