Wall clock time and date at job start Mon Mar 30 2020 03:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86800 * 119.99739 * 2 1 4 4 H 1.48505 * 109.47027 * 240.00204 * 3 2 1 5 5 H 1.48497 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47286 * 120.00241 * 3 2 1 7 7 C 1.39942 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99889 * 191.34910 * 7 2 1 9 9 C 1.41396 * 119.99774 * 11.34770 * 7 2 1 10 10 C 1.40717 * 120.23927 * 208.93818 * 9 7 2 11 11 C 1.37621 * 119.74254 * 179.69974 * 10 9 7 12 12 C 1.38640 * 120.24686 * 0.27734 * 11 10 9 13 13 C 1.50703 * 119.74613 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46725 * 90.00778 * 13 12 11 15 15 N 1.45401 * 111.00089 * 173.64109 * 14 13 12 16 16 C 1.48538 * 110.99837 * 358.36944 * 15 14 13 17 17 C 1.54937 * 103.22915 * 159.71947 * 16 15 14 18 18 C 1.54594 * 102.92117 * 322.59053 * 17 16 15 19 19 C 1.47900 * 111.00479 * 115.76398 * 15 14 13 20 20 C 1.38631 * 120.50064 * 0.02562 * 12 11 10 21 21 C 1.37612 * 120.25301 * 359.97438 * 20 12 11 22 22 H 0.96999 * 120.00836 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.13090 * 359.97438 * 10 9 7 24 24 H 1.07995 * 119.87826 * 180.26114 * 11 10 9 25 25 H 1.08999 * 109.46816 * 209.99973 * 13 12 11 26 26 H 1.08999 * 109.47334 * 330.00436 * 13 12 11 27 27 H 1.00897 * 111.00063 * 297.58933 * 14 13 12 28 28 H 1.08998 * 110.66649 * 278.16208 * 16 15 14 29 29 H 1.08999 * 110.66633 * 41.28336 * 16 15 14 30 30 H 1.08995 * 110.72611 * 204.22461 * 17 16 15 31 31 H 1.09003 * 110.71825 * 80.94406 * 17 16 15 32 32 H 1.09005 * 110.30324 * 263.03925 * 18 17 16 33 33 H 1.08997 * 110.31014 * 140.87185 * 18 17 16 34 34 H 1.09006 * 109.91598 * 333.51187 * 19 15 14 35 35 H 1.09002 * 109.91665 * 94.60446 * 19 15 14 36 36 H 1.07999 * 119.87478 * 179.97438 * 20 12 11 37 37 H 1.08003 * 120.13286 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2126 5 1 1.2771 2.7464 -0.0006 6 1 3.0959 1.6965 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0722 -1.2211 0.1835 9 6 1.3217 -2.4244 -0.2420 10 6 1.7899 -3.6274 0.3181 11 6 1.1105 -4.8006 0.0814 12 6 -0.0277 -4.8010 -0.7101 13 6 -0.7626 -6.0923 -0.9623 14 7 -1.7817 -6.2868 0.0777 15 7 -2.6104 -7.4451 -0.2150 16 6 -2.2119 -8.0735 -1.5005 17 6 -2.7877 -9.5075 -1.3877 18 6 -2.5684 -9.8518 0.1034 19 6 -2.4405 -8.4924 0.8154 20 6 -0.4944 -3.6227 -1.2721 21 6 0.1689 -2.4379 -1.0489 22 1 -0.4851 0.8400 0.0004 23 1 2.6765 -3.6293 0.9349 24 1 1.4655 -5.7244 0.5137 25 1 -1.2439 -6.0515 -1.9394 26 1 -0.0568 -6.9225 -0.9392 27 1 -1.3572 -6.3671 0.9895 28 1 -2.6589 -7.5445 -2.3422 29 1 -1.1264 -8.1012 -1.5950 30 1 -2.2363 -10.1961 -2.0278 31 1 -3.8496 -9.5171 -1.6336 32 1 -1.6535 -10.4313 0.2271 33 1 -3.4230 -10.4044 0.4937 34 1 -1.4559 -8.4051 1.2749 35 1 -3.2150 -8.3940 1.5761 36 1 -1.3819 -3.6348 -1.8873 37 1 -0.1965 -1.5210 -1.4874 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686786700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:14 Heat of formation + Delta-G solvation = 53.032866 kcal Electronic energy + Delta-G solvation = -17184.251136 eV Core-core repulsion = 14540.870945 eV Total energy + Delta-G solvation = -2643.380191 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.11760 -37.53287 -34.51717 -33.24166 -30.57156 -29.30772 -29.14103 -27.96349 -25.67296 -23.52418 -21.15668 -21.03420 -20.78158 -19.41440 -17.28114 -16.67147 -16.21729 -15.31167 -15.02387 -14.36875 -13.87120 -13.80711 -13.35457 -13.07483 -12.85056 -12.38918 -12.09338 -11.94224 -11.76176 -11.59670 -11.42470 -11.25400 -11.06871 -10.88997 -10.72865 -10.52988 -10.35398 -9.72010 -9.36071 -9.28820 -9.14828 -7.82982 -7.45168 -7.21952 -6.69442 -4.36572 2.72969 3.05697 3.08356 3.10672 3.16155 3.77771 3.95482 4.30714 4.59753 4.66538 4.81153 5.10883 5.11695 5.36147 5.51032 5.62390 5.65370 5.67436 5.71274 5.85676 5.90409 5.93599 6.00782 6.16931 6.30554 6.41297 6.46898 6.95137 7.09424 7.27263 7.34275 7.48381 7.62044 7.76654 7.92577 8.06231 8.11526 8.30518 8.65339 8.90650 8.97357 10.24854 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.061294 B = 0.004074 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.702887 B = 6871.741265 C = 6982.269481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.114 3.886 10 C -0.223 4.223 11 C -0.088 4.088 12 C -0.208 4.208 13 C 0.093 3.907 14 N -0.497 5.497 15 N -0.323 5.323 16 C -0.005 4.005 17 C -0.124 4.124 18 C -0.131 4.131 19 C -0.004 4.004 20 C -0.078 4.078 21 C -0.160 4.160 22 H 0.281 0.719 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.329 0.671 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -12.600 -1.351 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.112 3.888 10 C -0.242 4.242 11 C -0.107 4.107 12 C -0.211 4.211 13 C -0.036 4.036 14 N -0.218 5.218 15 N -0.137 5.137 16 C -0.134 4.134 17 C -0.163 4.163 18 C -0.170 4.170 19 C -0.134 4.134 20 C -0.097 4.097 21 C -0.179 4.179 22 H 0.092 0.908 23 H 0.109 0.891 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.147 0.853 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.315 -11.783 -1.619 12.652 hybrid contribution 1.908 -0.272 0.472 1.984 sum -2.408 -12.055 -1.147 12.346 Atomic orbital electron populations 1.69787 1.07404 1.29199 1.35998 1.25888 0.94819 1.01168 0.92428 0.86335 0.80004 0.80294 0.79845 1.18928 1.20330 1.19093 1.19555 0.96006 0.90656 1.43347 0.90616 1.17640 0.91384 0.91948 0.87874 1.20973 1.03132 0.93446 1.06694 1.20345 0.95729 0.96274 0.98382 1.18785 0.99486 0.93288 1.09546 1.21201 0.91563 0.95100 0.95698 1.65756 1.25315 1.25501 1.05232 1.70060 1.40412 1.02331 1.00863 1.23899 0.99793 0.94579 0.95121 1.22517 1.01859 0.95927 0.95978 1.22417 1.01961 0.96845 0.95748 1.23642 1.00911 0.91992 0.96864 1.20516 0.97595 0.92559 0.99025 1.21346 0.98834 0.96447 1.01275 0.90843 0.89059 0.90101 0.90670 0.96179 0.85306 0.89248 0.92205 0.91095 0.90597 0.91722 0.90925 0.93561 0.89600 0.89230 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.97 10.91 55.55 0.61 -20.36 16 2 C 0.07 1.88 5.24 -17.34 -0.09 1.79 16 3 Si 0.91 18.85 29.57 -169.99 -5.03 13.83 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.47 -12.45 9.06 -37.74 -0.34 -12.79 16 8 H 0.08 1.94 7.87 -52.48 -0.41 1.52 16 9 C 0.11 3.06 5.54 -106.82 -0.59 2.47 16 10 C -0.22 -5.49 9.80 -38.87 -0.38 -5.87 16 11 C -0.09 -1.97 9.67 -39.66 -0.38 -2.35 16 12 C -0.21 -4.54 5.47 -104.33 -0.57 -5.11 16 13 C 0.09 1.67 4.55 -4.98 -0.02 1.65 16 14 N -0.50 -8.71 7.48 -11.41 -0.09 -8.79 16 15 N -0.32 -4.84 6.20 -110.08 -0.68 -5.53 16 16 C -0.01 -0.07 5.19 -1.89 -0.01 -0.08 16 17 C -0.12 -1.24 7.06 -24.87 -0.18 -1.42 16 18 C -0.13 -1.28 6.93 -25.38 -0.18 -1.46 16 19 C 0.00 -0.05 6.74 -2.76 -0.02 -0.07 16 20 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 21 C -0.16 -4.19 8.66 -38.87 -0.34 -4.52 16 22 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 23 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 24 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 25 H 0.07 1.32 6.74 -51.93 -0.35 0.97 16 26 H 0.02 0.34 6.80 -51.93 -0.35 -0.01 16 27 H 0.33 5.61 7.86 -174.66 -1.37 4.23 16 28 H 0.09 1.16 7.82 -51.93 -0.41 0.75 16 29 H 0.06 0.79 5.67 -51.93 -0.29 0.50 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.57 7.55 -51.93 -0.39 0.17 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.12 3.22 6.28 -52.48 -0.33 2.89 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -27.75 298.82 -10.60 -38.35 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.43 Total: 8.00 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -3.48 Total: -30.00 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.16 Total: -34.68 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.75 -10.60 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686786700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.379 kcal (2) G-P(sol) polarization free energy of solvation -27.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds