Wall clock time and date at job start Mon Mar 30 2020 03:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86800 * 119.99739 * 2 1 4 4 H 1.48505 * 109.47027 * 240.00204 * 3 2 1 5 5 H 1.48497 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47286 * 120.00241 * 3 2 1 7 7 C 1.39942 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99889 * 191.34910 * 7 2 1 9 9 C 1.41396 * 119.99774 * 11.34770 * 7 2 1 10 10 C 1.40717 * 120.23927 * 208.93818 * 9 7 2 11 11 C 1.37621 * 119.74254 * 179.69974 * 10 9 7 12 12 C 1.38640 * 120.24686 * 0.27734 * 11 10 9 13 13 C 1.50703 * 119.74613 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46725 * 90.00778 * 13 12 11 15 15 N 1.45401 * 111.00089 * 173.64109 * 14 13 12 16 16 C 1.48538 * 110.99837 * 358.36944 * 15 14 13 17 17 C 1.54937 * 103.22915 * 159.71947 * 16 15 14 18 18 C 1.54594 * 102.92117 * 322.59053 * 17 16 15 19 19 C 1.47900 * 111.00479 * 115.76398 * 15 14 13 20 20 C 1.38631 * 120.50064 * 0.02562 * 12 11 10 21 21 C 1.37612 * 120.25301 * 359.97438 * 20 12 11 22 22 H 0.96999 * 120.00836 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.13090 * 359.97438 * 10 9 7 24 24 H 1.07995 * 119.87826 * 180.26114 * 11 10 9 25 25 H 1.08999 * 109.46816 * 209.99973 * 13 12 11 26 26 H 1.08999 * 109.47334 * 330.00436 * 13 12 11 27 27 H 1.00897 * 111.00063 * 297.58933 * 14 13 12 28 28 H 1.08998 * 110.66649 * 278.16208 * 16 15 14 29 29 H 1.08999 * 110.66633 * 41.28336 * 16 15 14 30 30 H 1.08995 * 110.72611 * 204.22461 * 17 16 15 31 31 H 1.09003 * 110.71825 * 80.94406 * 17 16 15 32 32 H 1.09005 * 110.30324 * 263.03925 * 18 17 16 33 33 H 1.08997 * 110.31014 * 140.87185 * 18 17 16 34 34 H 1.09006 * 109.91598 * 333.51187 * 19 15 14 35 35 H 1.09002 * 109.91665 * 94.60446 * 19 15 14 36 36 H 1.07999 * 119.87478 * 179.97438 * 20 12 11 37 37 H 1.08003 * 120.13286 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2126 5 1 1.2771 2.7464 -0.0006 6 1 3.0959 1.6965 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0722 -1.2211 0.1835 9 6 1.3217 -2.4244 -0.2420 10 6 1.7899 -3.6274 0.3181 11 6 1.1105 -4.8006 0.0814 12 6 -0.0277 -4.8010 -0.7101 13 6 -0.7626 -6.0923 -0.9623 14 7 -1.7817 -6.2868 0.0777 15 7 -2.6104 -7.4451 -0.2150 16 6 -2.2119 -8.0735 -1.5005 17 6 -2.7877 -9.5075 -1.3877 18 6 -2.5684 -9.8518 0.1034 19 6 -2.4405 -8.4924 0.8154 20 6 -0.4944 -3.6227 -1.2721 21 6 0.1689 -2.4379 -1.0489 22 1 -0.4851 0.8400 0.0004 23 1 2.6765 -3.6293 0.9349 24 1 1.4655 -5.7244 0.5137 25 1 -1.2439 -6.0515 -1.9394 26 1 -0.0568 -6.9225 -0.9392 27 1 -1.3572 -6.3671 0.9895 28 1 -2.6589 -7.5445 -2.3422 29 1 -1.1264 -8.1012 -1.5950 30 1 -2.2363 -10.1961 -2.0278 31 1 -3.8496 -9.5171 -1.6336 32 1 -1.6535 -10.4313 0.2271 33 1 -3.4230 -10.4044 0.4937 34 1 -1.4559 -8.4051 1.2749 35 1 -3.2150 -8.3940 1.5761 36 1 -1.3819 -3.6348 -1.8873 37 1 -0.1965 -1.5210 -1.4874 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686786700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:14 Heat of formation + Delta-G solvation = 36.851640 kcal Electronic energy + Delta-G solvation = -17184.952806 eV Core-core repulsion = 14540.870945 eV Total energy + Delta-G solvation = -2644.081862 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29334 -39.26125 -36.08912 -34.79956 -32.16753 -31.18898 -30.21124 -29.32820 -27.24995 -25.05470 -22.91055 -22.34534 -21.99517 -20.84760 -19.21319 -17.82464 -17.27331 -17.11278 -16.34836 -15.82540 -15.63778 -15.32209 -14.58978 -14.44211 -14.05518 -13.95361 -13.76742 -13.40800 -13.24806 -12.98369 -12.73796 -12.67097 -12.40335 -12.28125 -12.15727 -11.94621 -11.54054 -11.44490 -11.23666 -11.06566 -10.49993 -9.37132 -9.31790 -8.85714 -8.58066 -6.36011 0.91986 1.12772 1.38410 1.49996 1.51494 2.21968 2.51817 2.82290 3.32083 3.73214 3.75534 3.97684 4.02228 4.10226 4.26273 4.28840 4.49399 4.55533 4.56335 4.68818 4.75226 4.82943 4.90322 4.95162 5.04715 5.12317 5.15378 5.18179 5.35067 5.42346 5.47478 5.70779 5.92264 6.10088 6.15672 6.28475 6.38294 6.65040 6.70590 6.94800 7.02834 8.38270 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.061294 B = 0.004074 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.702887 B = 6871.741265 C = 6982.269481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.081 3.919 10 C -0.237 4.237 11 C -0.087 4.087 12 C -0.196 4.196 13 C 0.105 3.895 14 N -0.516 5.516 15 N -0.338 5.338 16 C -0.010 4.010 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.008 4.008 20 C -0.086 4.086 21 C -0.183 4.183 22 H 0.286 0.714 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.329 0.671 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -14.429 -1.311 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.093 0.907 9 C 0.078 3.922 10 C -0.257 4.257 11 C -0.106 4.106 12 C -0.198 4.198 13 C -0.024 4.024 14 N -0.237 5.237 15 N -0.151 5.151 16 C -0.139 4.139 17 C -0.156 4.156 18 C -0.164 4.164 19 C -0.138 4.138 20 C -0.105 4.105 21 C -0.202 4.202 22 H 0.097 0.903 23 H 0.116 0.884 24 H 0.132 0.868 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.400 -13.635 -1.578 14.414 hybrid contribution 1.834 0.094 0.455 1.892 sum -2.566 -13.541 -1.124 13.828 Atomic orbital electron populations 1.69863 1.08916 1.30393 1.36848 1.26762 0.95591 1.04489 0.91357 0.85213 0.78633 0.75587 0.79999 1.18428 1.19290 1.18418 1.19827 0.96255 0.91869 1.45495 0.90663 1.17983 0.92191 0.93122 0.88856 1.21199 1.03764 0.93771 1.06932 1.20673 0.95325 0.96762 0.97830 1.19197 0.99011 0.94329 1.07278 1.21042 0.91873 0.93316 0.96170 1.65636 1.24907 1.28193 1.04965 1.69908 1.39791 1.02874 1.02541 1.23969 0.99783 0.96249 0.93903 1.22520 1.02246 0.94256 0.96593 1.22424 1.03328 0.95536 0.95128 1.23712 1.01015 0.92538 0.96487 1.20730 0.97823 0.92613 0.99342 1.21291 0.99753 0.96744 1.02429 0.90310 0.88366 0.86789 0.90283 0.94447 0.85312 0.89806 0.92399 0.89118 0.90189 0.90534 0.89346 0.93562 0.89387 0.88081 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.25 10.91 21.83 0.24 -45.01 16 2 C 0.03 1.64 5.24 85.26 0.45 2.09 16 3 Si 0.99 39.21 29.57 68.60 2.03 41.24 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.50 -27.92 9.06 23.46 0.21 -27.71 16 8 H 0.08 3.99 7.87 -2.91 -0.02 3.96 16 9 C 0.08 4.48 5.54 -21.29 -0.12 4.36 16 10 C -0.24 -11.78 9.80 22.73 0.22 -11.56 16 11 C -0.09 -3.78 9.67 22.22 0.21 -3.57 16 12 C -0.20 -8.33 5.47 -19.67 -0.11 -8.44 16 13 C 0.10 3.56 4.55 85.56 0.39 3.95 16 14 N -0.52 -17.24 7.48 -190.01 -1.42 -18.66 16 15 N -0.34 -9.42 6.20 -502.19 -3.12 -12.54 16 16 C -0.01 -0.24 5.19 86.65 0.45 0.21 16 17 C -0.12 -1.96 7.06 31.80 0.22 -1.74 16 18 C -0.13 -2.01 6.93 31.47 0.22 -1.80 16 19 C -0.01 -0.18 6.74 86.45 0.58 0.40 16 20 C -0.09 -4.13 9.67 22.22 0.21 -3.91 16 21 C -0.18 -9.94 8.66 22.73 0.20 -9.74 16 22 H 0.29 14.14 8.30 -92.71 -0.77 13.38 16 23 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 24 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 25 H 0.08 2.63 6.74 -2.39 -0.02 2.61 16 26 H 0.04 1.15 6.80 -2.39 -0.02 1.13 16 27 H 0.33 10.69 7.86 -204.85 -1.61 9.08 16 28 H 0.08 2.02 7.82 -2.39 -0.02 2.00 16 29 H 0.06 1.37 5.67 -2.39 -0.01 1.36 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.02 7.55 -2.38 -0.02 1.00 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.10 5.65 6.28 -2.91 -0.02 5.64 16 Total: -1.00 -60.97 298.82 0.33 -60.64 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -0.55 Total: 31.78 kcal Atomic # 6 Polarization: -60.60 SS G_CDS: 3.15 Total: -57.46 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -4.30 Total: -76.20 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -60.97 0.33 -60.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686786700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.490 kcal (2) G-P(sol) polarization free energy of solvation -60.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds