Wall clock time and date at job start Mon Mar 30 2020 03:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86803 * 119.99682 * 2 1 4 4 H 1.48498 * 109.46967 * 85.18244 * 3 2 1 5 5 H 1.48494 * 109.47172 * 325.17892 * 3 2 1 6 6 H 1.48501 * 109.46783 * 205.18231 * 3 2 1 7 7 C 1.39923 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00406 * 197.30809 * 7 2 1 9 9 C 1.41411 * 120.00011 * 17.30009 * 7 2 1 10 10 C 1.40786 * 120.20714 * 25.09333 * 9 7 2 11 11 C 1.37648 * 119.89586 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32162 * 359.97438 * 11 10 9 13 13 C 1.39281 * 120.42695 * 0.02562 * 12 11 10 14 14 N 1.39694 * 119.95229 * 180.02562 * 13 12 11 15 15 C 1.46844 * 110.99892 * 235.78727 * 14 13 12 16 16 C 1.53043 * 109.52120 * 185.83651 * 15 14 13 17 17 C 1.53119 * 109.28101 * 300.82576 * 16 15 14 18 18 C 1.53118 * 109.15953 * 57.65233 * 17 16 15 19 19 H 1.08996 * 109.53797 * 62.30663 * 18 17 16 20 20 N 1.46903 * 109.50179 * 182.40508 * 18 17 16 21 21 C 1.46844 * 110.99912 * 0.02562 * 14 13 12 22 22 C 1.38323 * 120.09758 * 359.71434 * 13 12 11 23 23 H 0.96995 * 119.99920 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.05136 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.83556 * 180.02562 * 11 10 9 26 26 H 1.08000 * 119.78356 * 179.97438 * 12 11 10 27 27 H 1.08994 * 109.46827 * 305.85560 * 15 14 13 28 28 H 1.09001 * 109.45895 * 65.82604 * 15 14 13 29 29 H 1.08993 * 109.50074 * 180.88018 * 16 15 14 30 30 H 1.09003 * 109.53005 * 60.78507 * 16 15 14 31 31 H 1.09000 * 109.51809 * 297.74930 * 17 16 15 32 32 H 1.08994 * 109.57311 * 177.58793 * 17 16 15 33 33 H 1.00897 * 111.00096 * 299.80684 * 20 18 17 34 34 H 1.00902 * 110.99871 * 63.75839 * 20 18 17 35 35 H 1.09000 * 109.46096 * 294.17690 * 21 14 13 36 36 H 1.09002 * 109.46529 * 54.15053 * 21 14 13 37 37 H 1.07996 * 120.16319 * 180.27780 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3879 2.1053 1.3951 5 1 1.4944 2.6211 -0.7994 6 1 3.5871 1.4130 -0.5957 7 6 2.0080 -1.2117 0.0005 8 1 3.0514 -1.2328 0.2788 9 6 1.3490 -2.4089 -0.3631 10 6 0.2191 -2.3687 -1.2020 11 6 -0.4178 -3.5379 -1.5515 12 6 0.0478 -4.7552 -1.0822 13 6 1.1644 -4.8105 -0.2515 14 7 1.6258 -6.0435 0.2156 15 6 1.6947 -6.0582 1.6824 16 6 2.3385 -7.3651 2.1510 17 6 1.5056 -8.5477 1.6486 18 6 1.4090 -8.4817 0.1219 19 1 2.4055 -8.5708 -0.3106 20 7 0.5634 -9.5803 -0.3639 21 6 0.7924 -7.1425 -0.2884 22 6 1.8211 -3.6468 0.1064 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1474 -1.4221 -1.5708 25 1 -1.2842 -3.5060 -2.1954 26 1 -0.4588 -5.6671 -1.3616 27 1 2.2932 -5.2147 2.0264 28 1 0.6884 -5.9811 2.0940 29 1 2.3753 -7.3825 3.2402 30 1 3.3502 -7.4368 1.7516 31 1 0.5056 -8.4979 2.0794 32 1 1.9832 -9.4820 1.9433 33 1 0.9501 -10.4757 -0.1055 34 1 -0.3829 -9.4843 -0.0271 35 1 -0.2099 -7.0605 0.1321 36 1 0.7358 -7.0864 -1.3755 37 1 2.6897 -3.6889 0.7468 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687743451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:08 Heat of formation + Delta-G solvation = 17.198912 kcal Electronic energy + Delta-G solvation = -17710.913665 eV Core-core repulsion = 15065.979598 eV Total energy + Delta-G solvation = -2644.934068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.52977 -37.09377 -34.68090 -33.30401 -32.00638 -29.93580 -28.41956 -27.53033 -25.21194 -23.98111 -22.37618 -20.48411 -20.09194 -19.49783 -17.40980 -16.11592 -15.76205 -15.09304 -14.78955 -14.29238 -14.20755 -13.82331 -13.65923 -13.48235 -12.84889 -12.73085 -12.37046 -12.00729 -11.63764 -11.31222 -11.13723 -11.01720 -10.85545 -10.78579 -10.43847 -10.39623 -10.26405 -9.81572 -9.41939 -9.18648 -8.72652 -8.52249 -7.43095 -6.77439 -6.63382 -4.34271 2.80509 3.01442 3.08766 3.13463 3.24063 3.94976 4.20915 4.60867 4.73373 4.87519 4.98668 5.16241 5.34886 5.57114 5.64549 5.72735 5.79436 5.91661 5.91942 6.09428 6.21241 6.23687 6.35411 6.42750 6.48031 6.93939 6.99182 7.05851 7.09757 7.17524 7.29772 7.37606 7.61814 7.81092 7.99889 8.13845 8.16456 8.42384 8.70485 8.93807 9.02264 10.21783 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042020 B = 0.005280 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.184207 B = 5301.972714 C = 5766.182375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.124 3.876 10 C -0.177 4.177 11 C -0.090 4.090 12 C -0.280 4.280 13 C 0.121 3.879 14 N -0.487 5.487 15 C 0.059 3.941 16 C -0.114 4.114 17 C -0.153 4.153 18 C 0.091 3.909 19 H 0.088 0.912 20 N -0.844 5.844 21 C 0.068 3.932 22 C -0.234 4.234 23 H 0.279 0.721 24 H 0.116 0.884 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.340 0.660 34 H 0.337 0.663 35 H 0.034 0.966 36 H 0.086 0.914 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 -11.020 2.993 11.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.121 3.879 10 C -0.196 4.196 11 C -0.109 4.109 12 C -0.302 4.302 13 C 0.026 3.974 14 N -0.204 5.204 15 C -0.067 4.067 16 C -0.153 4.153 17 C -0.193 4.193 18 C -0.021 4.021 19 H 0.106 0.894 20 N -0.372 5.372 21 C -0.060 4.060 22 C -0.256 4.256 23 H 0.090 0.910 24 H 0.134 0.866 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.470 -10.701 2.116 11.007 hybrid contribution -0.616 0.648 1.363 1.630 sum 0.853 -10.054 3.478 10.673 Atomic orbital electron populations 1.69844 1.07576 1.29068 1.35533 1.25891 0.94690 1.01239 0.92227 0.86338 0.80823 0.80812 0.78979 1.19647 1.20071 1.18409 1.19551 0.97879 0.91115 1.40715 0.90488 1.17461 0.90833 0.91601 0.87967 1.21292 0.99844 0.96712 1.01791 1.20531 0.98206 0.93033 0.99100 1.20490 1.01102 0.96875 1.11697 1.18436 0.93563 0.87792 0.97622 1.59101 1.50211 1.02455 1.08650 1.22166 0.99659 0.97984 0.86928 1.21558 0.99885 0.93973 0.99839 1.22451 1.00308 0.98664 0.97867 1.21523 0.97729 0.90998 0.91853 0.89426 1.58824 1.05996 1.04913 1.67438 1.22029 0.93863 0.88890 1.01259 1.20588 1.04182 0.91330 1.09500 0.90987 0.86597 0.89484 0.88928 0.89833 0.94840 0.91702 0.91050 0.92469 0.92268 0.84807 0.85023 0.94807 0.89586 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.73 10.96 55.55 0.61 -20.13 16 2 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.42 9.05 -37.74 -0.34 -12.76 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.12 3.37 5.57 -106.85 -0.59 2.78 16 10 C -0.18 -4.69 8.69 -38.83 -0.34 -5.03 16 11 C -0.09 -2.16 10.02 -39.69 -0.40 -2.56 16 12 C -0.28 -6.44 8.83 -39.09 -0.35 -6.79 16 13 C 0.12 2.78 5.63 -83.86 -0.47 2.30 16 14 N -0.49 -9.27 4.70 -171.21 -0.80 -10.07 16 15 C 0.06 0.99 5.26 -3.83 -0.02 0.97 16 16 C -0.11 -1.48 6.09 -26.65 -0.16 -1.64 16 17 C -0.15 -1.78 5.57 -26.61 -0.15 -1.93 16 18 C 0.09 1.18 3.41 -67.63 -0.23 0.95 16 19 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 20 N -0.84 -9.29 9.26 -4.60 -0.04 -9.34 16 21 C 0.07 1.12 3.69 -3.84 -0.01 1.10 16 22 C -0.23 -5.87 8.90 -38.67 -0.34 -6.21 16 23 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 24 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 25 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 26 H 0.09 1.93 5.78 -52.49 -0.30 1.63 16 27 H 0.08 1.48 6.71 -51.93 -0.35 1.13 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.34 3.00 9.04 -39.29 -0.36 2.64 16 34 H 0.34 3.42 8.98 -39.29 -0.35 3.07 16 35 H 0.03 0.57 7.73 -51.93 -0.40 0.17 16 36 H 0.09 1.54 6.97 -51.93 -0.36 1.17 16 37 H 0.09 2.28 7.16 -52.49 -0.38 1.90 16 LS Contribution 293.33 15.07 4.42 4.42 Total: -1.00 -27.84 293.33 -9.68 -37.52 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.33 Total: 10.78 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -3.50 Total: -26.95 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: -0.24 Total: -39.53 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.84 -9.68 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687743451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.721 kcal (2) G-P(sol) polarization free energy of solvation -27.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds