Wall clock time and date at job start Mon Mar 30 2020 03:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86803 * 119.99682 * 2 1 4 4 H 1.48498 * 109.46967 * 85.18244 * 3 2 1 5 5 H 1.48494 * 109.47172 * 325.17892 * 3 2 1 6 6 H 1.48501 * 109.46783 * 205.18231 * 3 2 1 7 7 C 1.39923 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00406 * 197.30809 * 7 2 1 9 9 C 1.41411 * 120.00011 * 17.30009 * 7 2 1 10 10 C 1.40786 * 120.20714 * 25.09333 * 9 7 2 11 11 C 1.37648 * 119.89586 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32162 * 359.97438 * 11 10 9 13 13 C 1.39281 * 120.42695 * 0.02562 * 12 11 10 14 14 N 1.39694 * 119.95229 * 180.02562 * 13 12 11 15 15 C 1.46844 * 110.99892 * 235.78727 * 14 13 12 16 16 C 1.53043 * 109.52120 * 185.83651 * 15 14 13 17 17 C 1.53119 * 109.28101 * 300.82576 * 16 15 14 18 18 C 1.53118 * 109.15953 * 57.65233 * 17 16 15 19 19 H 1.08996 * 109.53797 * 62.30663 * 18 17 16 20 20 N 1.46903 * 109.50179 * 182.40508 * 18 17 16 21 21 C 1.46844 * 110.99912 * 0.02562 * 14 13 12 22 22 C 1.38323 * 120.09758 * 359.71434 * 13 12 11 23 23 H 0.96995 * 119.99920 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.05136 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.83556 * 180.02562 * 11 10 9 26 26 H 1.08000 * 119.78356 * 179.97438 * 12 11 10 27 27 H 1.08994 * 109.46827 * 305.85560 * 15 14 13 28 28 H 1.09001 * 109.45895 * 65.82604 * 15 14 13 29 29 H 1.08993 * 109.50074 * 180.88018 * 16 15 14 30 30 H 1.09003 * 109.53005 * 60.78507 * 16 15 14 31 31 H 1.09000 * 109.51809 * 297.74930 * 17 16 15 32 32 H 1.08994 * 109.57311 * 177.58793 * 17 16 15 33 33 H 1.00897 * 111.00096 * 299.80684 * 20 18 17 34 34 H 1.00902 * 110.99871 * 63.75839 * 20 18 17 35 35 H 1.09000 * 109.46096 * 294.17690 * 21 14 13 36 36 H 1.09002 * 109.46529 * 54.15053 * 21 14 13 37 37 H 1.07996 * 120.16319 * 180.27780 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3879 2.1053 1.3951 5 1 1.4944 2.6211 -0.7994 6 1 3.5871 1.4130 -0.5957 7 6 2.0080 -1.2117 0.0005 8 1 3.0514 -1.2328 0.2788 9 6 1.3490 -2.4089 -0.3631 10 6 0.2191 -2.3687 -1.2020 11 6 -0.4178 -3.5379 -1.5515 12 6 0.0478 -4.7552 -1.0822 13 6 1.1644 -4.8105 -0.2515 14 7 1.6258 -6.0435 0.2156 15 6 1.6947 -6.0582 1.6824 16 6 2.3385 -7.3651 2.1510 17 6 1.5056 -8.5477 1.6486 18 6 1.4090 -8.4817 0.1219 19 1 2.4055 -8.5708 -0.3106 20 7 0.5634 -9.5803 -0.3639 21 6 0.7924 -7.1425 -0.2884 22 6 1.8211 -3.6468 0.1064 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1474 -1.4221 -1.5708 25 1 -1.2842 -3.5060 -2.1954 26 1 -0.4588 -5.6671 -1.3616 27 1 2.2932 -5.2147 2.0264 28 1 0.6884 -5.9811 2.0940 29 1 2.3753 -7.3825 3.2402 30 1 3.3502 -7.4368 1.7516 31 1 0.5056 -8.4979 2.0794 32 1 1.9832 -9.4820 1.9433 33 1 0.9501 -10.4757 -0.1055 34 1 -0.3829 -9.4843 -0.0271 35 1 -0.2099 -7.0605 0.1321 36 1 0.7358 -7.0864 -1.3755 37 1 2.6897 -3.6889 0.7468 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687743451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:08 Heat of formation + Delta-G solvation = -0.698712 kcal Electronic energy + Delta-G solvation = -17711.689765 eV Core-core repulsion = 15065.979598 eV Total energy + Delta-G solvation = -2645.710167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.00349 -38.73650 -36.18921 -34.94601 -33.31614 -31.81534 -29.97380 -28.92226 -27.11162 -25.37475 -23.74737 -22.13161 -21.81898 -20.80105 -19.20970 -17.66073 -17.15844 -16.67803 -16.37142 -15.81931 -15.55356 -15.18929 -15.14161 -14.60673 -14.51664 -14.21277 -14.00631 -13.46547 -13.37406 -12.98760 -12.77253 -12.50315 -12.29212 -12.11510 -11.96660 -11.87222 -11.70189 -11.48053 -11.27893 -11.04213 -10.26287 -9.58333 -9.40375 -8.66372 -8.44436 -6.36930 0.96938 1.08737 1.38167 1.49388 1.55023 2.21006 2.68626 2.88599 3.63147 3.74716 3.80179 3.95290 4.03767 4.21245 4.31773 4.40928 4.53095 4.63034 4.64528 4.72666 4.85927 4.91112 5.05044 5.06856 5.08447 5.11654 5.18286 5.32005 5.37949 5.49549 5.80202 5.92109 6.07903 6.17599 6.19982 6.36295 6.53091 6.63211 6.76906 6.94977 7.06157 8.33534 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042020 B = 0.005280 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.184207 B = 5301.972714 C = 5766.182375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.500 4.500 8 H 0.074 0.926 9 C 0.097 3.903 10 C -0.206 4.206 11 C -0.090 4.090 12 C -0.284 4.284 13 C 0.128 3.872 14 N -0.492 5.492 15 C 0.057 3.943 16 C -0.107 4.107 17 C -0.146 4.146 18 C 0.101 3.899 19 H 0.081 0.919 20 N -0.845 5.845 21 C 0.068 3.932 22 C -0.254 4.254 23 H 0.288 0.712 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.356 0.644 34 H 0.345 0.655 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 -12.546 3.599 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.092 0.908 9 C 0.094 3.906 10 C -0.226 4.226 11 C -0.109 4.109 12 C -0.305 4.305 13 C 0.032 3.968 14 N -0.209 5.209 15 C -0.069 4.069 16 C -0.145 4.145 17 C -0.185 4.185 18 C -0.011 4.011 19 H 0.099 0.901 20 N -0.376 5.376 21 C -0.060 4.060 22 C -0.276 4.276 23 H 0.099 0.901 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.135 0.865 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.682 -12.276 2.731 12.688 hybrid contribution -0.723 0.985 1.170 1.691 sum 0.960 -11.291 3.901 11.984 Atomic orbital electron populations 1.69894 1.09041 1.30533 1.35608 1.26758 0.95476 1.04487 0.91074 0.85197 0.79178 0.75922 0.79431 1.18603 1.18907 1.18333 1.19802 0.98060 0.92411 1.42655 0.90812 1.17819 0.91537 0.92664 0.88572 1.21243 1.00967 0.96988 1.03416 1.20822 0.98533 0.92730 0.98837 1.20805 1.01071 0.97390 1.11240 1.18644 0.92673 0.88952 0.96568 1.59061 1.50272 1.01424 1.10109 1.22233 0.99397 0.99984 0.85245 1.21539 0.99654 0.92111 1.01220 1.22410 1.00571 0.99181 0.96370 1.21314 0.97228 0.89568 0.93008 0.90124 1.58732 1.06221 1.05086 1.67577 1.22070 0.93770 0.89885 1.00234 1.20666 1.04791 0.91809 1.10326 0.90131 0.88161 0.87169 0.86503 0.91560 0.95566 0.89420 0.90959 0.92064 0.89401 0.82986 0.84239 0.95005 0.91112 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.13 10.96 21.82 0.24 -43.89 16 2 C 0.04 1.91 5.14 85.25 0.44 2.35 16 3 Si 0.98 38.93 29.59 68.60 2.03 40.96 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.50 -27.91 9.05 23.46 0.21 -27.70 16 8 H 0.07 3.99 7.90 -2.91 -0.02 3.97 16 9 C 0.10 5.48 5.57 -21.31 -0.12 5.36 16 10 C -0.21 -11.35 8.69 22.75 0.20 -11.16 16 11 C -0.09 -4.41 10.02 22.20 0.22 -4.19 16 12 C -0.28 -13.01 8.83 22.59 0.20 -12.81 16 13 C 0.13 5.94 5.63 38.16 0.21 6.15 16 14 N -0.49 -18.47 4.70 -695.60 -3.27 -21.74 16 15 C 0.06 1.88 5.26 86.33 0.45 2.33 16 16 C -0.11 -2.49 6.09 30.65 0.19 -2.30 16 17 C -0.15 -2.87 5.57 30.67 0.17 -2.69 16 18 C 0.10 2.37 3.41 44.96 0.15 2.52 16 19 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 20 N -0.85 -16.06 9.26 -168.47 -1.56 -17.61 16 21 C 0.07 2.14 3.69 86.32 0.32 2.46 16 22 C -0.25 -13.18 8.90 22.86 0.20 -12.98 16 23 H 0.29 13.85 8.30 -92.71 -0.77 13.09 16 24 H 0.10 5.73 6.18 -2.91 -0.02 5.71 16 25 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 26 H 0.12 4.73 5.78 -2.91 -0.02 4.71 16 27 H 0.07 2.38 6.71 -2.39 -0.02 2.37 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.36 4.99 9.04 -89.70 -0.81 4.18 16 34 H 0.34 5.93 8.98 -89.69 -0.81 5.12 16 35 H 0.03 1.02 7.73 -2.39 -0.02 1.00 16 36 H 0.07 2.44 6.97 -2.39 -0.02 2.42 16 37 H 0.09 4.70 7.16 -2.91 -0.02 4.68 16 Total: -1.00 -61.87 293.33 -0.24 -62.10 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.53 Total: 32.82 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 2.85 Total: -52.64 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -4.59 Total: -83.24 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -61.87 -0.24 -62.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687743451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.406 kcal (2) G-P(sol) polarization free energy of solvation -61.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds