Wall clock time and date at job start Mon Mar 30 2020 04:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49079 * 2 1 4 4 C 1.53052 * 109.48713 * 239.93524 * 2 1 3 5 5 N 1.46963 * 109.36216 * 181.63160 * 4 2 1 6 6 C 1.46958 * 110.88054 * 59.31907 * 5 4 2 7 7 C 1.53049 * 109.36374 * 300.68014 * 6 5 4 8 8 N 1.46955 * 109.36748 * 58.40277 * 7 6 5 9 9 C 1.38855 * 111.00086 * 176.81042 * 8 7 6 10 10 C 1.39561 * 119.84357 * 63.60071 * 9 8 7 11 11 C 1.36343 * 120.16250 * 179.76114 * 10 9 8 12 12 C 1.40886 * 119.83643 * 0.51048 * 11 10 9 13 13 C 1.41135 * 120.15881 * 179.76290 * 12 11 10 14 14 H 1.08002 * 119.99812 * 26.04515 * 13 12 11 15 15 C 1.39865 * 120.00078 * 206.03892 * 13 12 11 16 16 N 1.30907 * 120.00069 * 17.38621 * 15 13 12 17 17 Si 1.86795 * 119.99925 * 197.37866 * 15 13 12 18 18 H 1.48499 * 109.47121 * 90.00374 * 17 15 13 19 19 H 1.48507 * 109.47097 * 210.00336 * 17 15 13 20 20 H 1.48503 * 109.47314 * 330.00214 * 17 15 13 21 21 C 1.40887 * 119.68401 * 359.74198 * 12 11 10 22 22 C 1.36342 * 119.84036 * 359.97438 * 21 12 11 23 23 H 1.09004 * 109.46977 * 305.66240 * 1 2 3 24 24 H 1.08999 * 109.47134 * 65.66096 * 1 2 3 25 25 H 1.09003 * 109.47114 * 185.66167 * 1 2 3 26 26 H 1.08993 * 109.49275 * 301.59897 * 4 2 1 27 27 H 1.09003 * 109.48966 * 61.64789 * 4 2 1 28 28 H 1.00898 * 111.00034 * 295.45382 * 5 4 2 29 29 H 1.09001 * 109.48646 * 60.64956 * 6 5 4 30 30 H 1.08998 * 109.48690 * 180.68865 * 6 5 4 31 31 H 1.08993 * 109.48749 * 298.43036 * 7 6 5 32 32 H 1.08998 * 109.48607 * 178.36833 * 7 6 5 33 33 H 1.08002 * 119.91948 * 0.02562 * 10 9 8 34 34 H 1.08000 * 120.08290 * 180.24870 * 11 10 9 35 35 H 0.96999 * 119.99859 * 179.97438 * 16 15 13 36 36 H 1.08006 * 120.07786 * 180.02562 * 21 12 11 37 37 H 1.07999 * 119.91696 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7228 -1.2487 5 7 3.5097 -0.7555 -1.2263 6 6 4.0000 -1.4491 -0.0271 7 6 3.4893 -0.7262 1.2216 8 7 2.0203 -0.6936 1.1993 9 6 1.5180 -0.1074 2.3534 10 6 1.7972 1.2316 2.6304 11 6 1.3033 1.8151 3.7594 12 6 0.5182 1.0598 4.6528 13 6 0.0076 1.6556 5.8259 14 1 -0.1616 2.7217 5.8605 15 6 -0.2794 0.8653 6.9436 16 7 0.2258 -0.3384 7.0413 17 14 -1.3833 1.5276 8.2971 18 1 -2.7958 1.1799 7.9984 19 1 -0.9894 0.9255 9.5962 20 1 -1.2423 3.0040 8.3729 21 6 0.2448 -0.2929 4.3692 22 6 0.7406 -0.8616 3.2336 23 1 -0.3633 0.5992 0.8350 24 1 -0.3633 0.4235 -0.9363 25 1 -0.3633 -1.0227 0.1014 26 1 1.6544 -1.7420 -1.2625 27 1 1.7019 -0.1935 -2.1394 28 1 3.8930 0.1758 -1.2875 29 1 3.6360 -2.4765 -0.0269 30 1 5.0899 -1.4494 -0.0273 31 1 3.8756 0.2929 1.2353 32 1 3.8278 -1.2557 2.1122 33 1 2.4025 1.8083 1.9467 34 1 1.5168 2.8525 3.9704 35 1 0.0270 -0.8863 7.8167 36 1 -0.3566 -0.8777 5.0495 37 1 0.5314 -1.8983 3.0148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687744220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:35 Heat of formation + Delta-G solvation = 25.167185 kcal Electronic energy + Delta-G solvation = -17946.548139 eV Core-core repulsion = 15301.959601 eV Total energy + Delta-G solvation = -2644.588537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60632 -37.16497 -34.43236 -32.91675 -32.05489 -29.65206 -28.93238 -27.08555 -25.31757 -23.59861 -21.85913 -21.44949 -20.40918 -19.35852 -17.35631 -16.40738 -15.28310 -15.14231 -14.92666 -14.50182 -14.01419 -13.94310 -13.34678 -13.05956 -12.58461 -12.23018 -12.07901 -11.79934 -11.60344 -11.51836 -11.40664 -11.14958 -11.07128 -10.81982 -10.70865 -10.66992 -10.38447 -9.82515 -9.56707 -9.19684 -8.29939 -7.69292 -7.58340 -7.27599 -6.81795 -4.39149 2.67070 3.03738 3.04786 3.07379 3.13814 3.88841 4.35058 4.49457 4.53994 5.21012 5.40228 5.44025 5.46484 5.51373 5.67134 5.72892 5.83719 6.06923 6.09339 6.12810 6.15385 6.25373 6.33828 6.46519 6.67051 6.84544 7.01075 7.04303 7.16167 7.23633 7.40701 7.47614 7.58489 7.63745 7.90656 8.02228 8.23115 8.41889 8.61250 8.83077 8.96723 10.12880 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048425 B = 0.005292 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.070914 B = 5289.546383 C = 5404.476255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.051 3.949 3 H 0.032 0.968 4 C 0.063 3.937 5 N -0.689 5.689 6 C 0.058 3.942 7 C 0.024 3.976 8 N -0.473 5.473 9 C -0.053 4.053 10 C -0.111 4.111 11 C -0.220 4.220 12 C 0.113 3.887 13 C -0.461 4.461 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.790 5.790 17 Si 0.909 3.091 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.165 4.165 22 C -0.067 4.067 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.334 0.666 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.281 0.719 36 H 0.117 0.883 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -0.821 -8.928 9.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.058 4.058 3 H 0.050 0.950 4 C -0.067 4.067 5 N -0.316 5.316 6 C -0.072 4.072 7 C -0.105 4.105 8 N -0.195 5.195 9 C -0.147 4.147 10 C -0.131 4.131 11 C -0.240 4.240 12 C 0.111 3.889 13 C -0.490 4.490 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.415 5.415 17 Si 0.733 3.267 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.185 4.185 22 C -0.086 4.086 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.150 0.850 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.110 -2.093 -9.210 9.678 hybrid contribution -0.265 1.862 1.574 2.453 sum 1.844 -0.231 -7.636 7.859 Atomic orbital electron populations 1.21669 0.94036 1.02510 1.01083 1.22343 0.96630 0.95237 0.91627 0.95025 1.22179 0.87224 1.01452 0.95802 1.60832 1.08047 1.22963 1.39778 1.22126 0.98941 0.98913 0.87171 1.22837 0.89182 0.98889 0.99572 1.59337 1.06264 1.53181 1.00719 1.17901 1.09795 0.92247 0.94753 1.20658 1.00209 0.95051 0.97206 1.20605 1.05625 0.99309 0.98436 1.17655 0.87982 0.91870 0.91417 1.19560 1.37496 0.95530 0.96426 0.90445 1.25917 0.94299 0.94440 0.99566 1.69861 1.33792 1.09240 1.28647 0.86304 0.80772 0.80257 0.79356 1.19197 1.20265 1.18629 1.20977 1.04163 0.96557 0.96776 1.20279 0.97054 0.97429 0.93881 0.91837 0.93243 0.92152 0.90288 0.90964 0.84965 0.90280 0.90878 0.95552 0.90514 0.90366 0.89290 0.90777 0.86504 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.88 37.16 0.33 -1.81 16 2 C 0.05 0.82 2.27 -67.65 -0.15 0.66 16 3 H 0.03 0.54 7.21 -51.93 -0.37 0.17 16 4 C 0.06 0.85 6.00 -3.76 -0.02 0.83 16 5 N -0.69 -8.99 6.91 -113.63 -0.79 -9.77 16 6 C 0.06 0.79 6.72 -3.77 -0.03 0.76 16 7 C 0.02 0.40 5.34 -3.77 -0.02 0.38 16 8 N -0.47 -8.72 4.48 -163.27 -0.73 -9.45 16 9 C -0.05 -1.14 3.27 -83.69 -0.27 -1.42 16 10 C -0.11 -2.50 8.54 -39.77 -0.34 -2.84 16 11 C -0.22 -5.39 9.74 -39.26 -0.38 -5.78 16 12 C 0.11 2.99 5.56 -106.79 -0.59 2.40 16 13 C -0.46 -12.12 9.03 -37.87 -0.34 -12.46 16 14 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 15 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 16 N -0.79 -20.27 11.03 55.54 0.61 -19.66 16 17 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 21 C -0.16 -4.24 8.62 -39.26 -0.34 -4.57 16 22 C -0.07 -1.57 9.90 -39.77 -0.39 -1.97 16 23 H 0.06 1.17 7.36 -51.93 -0.38 0.79 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.33 4.03 8.89 -39.29 -0.35 3.68 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.45 7.40 -51.93 -0.38 0.06 16 32 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 33 H 0.08 1.63 7.01 -52.49 -0.37 1.27 16 34 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 36 H 0.12 3.10 6.25 -52.48 -0.33 2.78 16 37 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 295.76 15.07 4.46 4.46 Total: -1.00 -26.58 295.76 -9.66 -36.24 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.54 Total: 8.77 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -2.64 Total: -24.02 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.90 Total: -38.88 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.58 -9.66 -36.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.404 kcal (2) G-P(sol) polarization free energy of solvation -26.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds