Wall clock time and date at job start Mon Mar 30 2020 04:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49079 * 2 1 4 4 C 1.53052 * 109.48713 * 239.93524 * 2 1 3 5 5 N 1.46963 * 109.36216 * 181.63160 * 4 2 1 6 6 C 1.46958 * 110.88054 * 59.31907 * 5 4 2 7 7 C 1.53049 * 109.36374 * 300.68014 * 6 5 4 8 8 N 1.46955 * 109.36748 * 58.40277 * 7 6 5 9 9 C 1.38855 * 111.00086 * 176.81042 * 8 7 6 10 10 C 1.39561 * 119.84357 * 63.60071 * 9 8 7 11 11 C 1.36343 * 120.16250 * 179.76114 * 10 9 8 12 12 C 1.40886 * 119.83643 * 0.51048 * 11 10 9 13 13 C 1.41135 * 120.15881 * 179.76290 * 12 11 10 14 14 H 1.08002 * 119.99812 * 26.04515 * 13 12 11 15 15 C 1.39865 * 120.00078 * 206.03892 * 13 12 11 16 16 N 1.30907 * 120.00069 * 17.38621 * 15 13 12 17 17 Si 1.86795 * 119.99925 * 197.37866 * 15 13 12 18 18 H 1.48499 * 109.47121 * 90.00374 * 17 15 13 19 19 H 1.48507 * 109.47097 * 210.00336 * 17 15 13 20 20 H 1.48503 * 109.47314 * 330.00214 * 17 15 13 21 21 C 1.40887 * 119.68401 * 359.74198 * 12 11 10 22 22 C 1.36342 * 119.84036 * 359.97438 * 21 12 11 23 23 H 1.09004 * 109.46977 * 305.66240 * 1 2 3 24 24 H 1.08999 * 109.47134 * 65.66096 * 1 2 3 25 25 H 1.09003 * 109.47114 * 185.66167 * 1 2 3 26 26 H 1.08993 * 109.49275 * 301.59897 * 4 2 1 27 27 H 1.09003 * 109.48966 * 61.64789 * 4 2 1 28 28 H 1.00898 * 111.00034 * 295.45382 * 5 4 2 29 29 H 1.09001 * 109.48646 * 60.64956 * 6 5 4 30 30 H 1.08998 * 109.48690 * 180.68865 * 6 5 4 31 31 H 1.08993 * 109.48749 * 298.43036 * 7 6 5 32 32 H 1.08998 * 109.48607 * 178.36833 * 7 6 5 33 33 H 1.08002 * 119.91948 * 0.02562 * 10 9 8 34 34 H 1.08000 * 120.08290 * 180.24870 * 11 10 9 35 35 H 0.96999 * 119.99859 * 179.97438 * 16 15 13 36 36 H 1.08006 * 120.07786 * 180.02562 * 21 12 11 37 37 H 1.07999 * 119.91696 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7228 -1.2487 5 7 3.5097 -0.7555 -1.2263 6 6 4.0000 -1.4491 -0.0271 7 6 3.4893 -0.7262 1.2216 8 7 2.0203 -0.6936 1.1993 9 6 1.5180 -0.1074 2.3534 10 6 1.7972 1.2316 2.6304 11 6 1.3033 1.8151 3.7594 12 6 0.5182 1.0598 4.6528 13 6 0.0076 1.6556 5.8259 14 1 -0.1616 2.7217 5.8605 15 6 -0.2794 0.8653 6.9436 16 7 0.2258 -0.3384 7.0413 17 14 -1.3833 1.5276 8.2971 18 1 -2.7958 1.1799 7.9984 19 1 -0.9894 0.9255 9.5962 20 1 -1.2423 3.0040 8.3729 21 6 0.2448 -0.2929 4.3692 22 6 0.7406 -0.8616 3.2336 23 1 -0.3633 0.5992 0.8350 24 1 -0.3633 0.4235 -0.9363 25 1 -0.3633 -1.0227 0.1014 26 1 1.6544 -1.7420 -1.2625 27 1 1.7019 -0.1935 -2.1394 28 1 3.8930 0.1758 -1.2875 29 1 3.6360 -2.4765 -0.0269 30 1 5.0899 -1.4494 -0.0273 31 1 3.8756 0.2929 1.2353 32 1 3.8278 -1.2557 2.1122 33 1 2.4025 1.8083 1.9467 34 1 1.5168 2.8525 3.9704 35 1 0.0270 -0.8863 7.8167 36 1 -0.3566 -0.8777 5.0495 37 1 0.5314 -1.8983 3.0148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687744220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:34 Heat of formation + Delta-G solvation = 8.608555 kcal Electronic energy + Delta-G solvation = -17947.266175 eV Core-core repulsion = 15301.959601 eV Total energy + Delta-G solvation = -2645.306574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07904 -38.84854 -36.03588 -34.52823 -33.36906 -31.54676 -30.71454 -28.44162 -26.88712 -25.10236 -23.25815 -23.05632 -22.14765 -20.83035 -19.26669 -17.88559 -17.05889 -16.44738 -16.30287 -15.76818 -15.65172 -15.53944 -14.82960 -14.73203 -14.15296 -13.95566 -13.64319 -13.37977 -13.15886 -12.87436 -12.78697 -12.71246 -12.60922 -12.35677 -12.10159 -11.98130 -11.85556 -11.63371 -11.44959 -11.04019 -9.51770 -9.49381 -9.17587 -9.14098 -8.67687 -6.35828 0.86020 1.10558 1.36795 1.48571 1.50130 2.18724 2.66721 3.01363 3.37115 3.65651 3.98196 4.17487 4.19707 4.23125 4.31904 4.37172 4.44470 4.58991 4.63551 4.81571 4.87376 4.94336 4.97594 5.08105 5.10598 5.17665 5.29782 5.32581 5.37256 5.59239 5.67478 5.94168 5.99920 6.09173 6.26246 6.30481 6.44080 6.56060 6.74217 6.89107 7.08434 8.29712 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048425 B = 0.005292 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.070914 B = 5289.546383 C = 5404.476255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 H 0.026 0.974 4 C 0.072 3.928 5 N -0.684 5.684 6 C 0.069 3.931 7 C 0.024 3.976 8 N -0.483 5.483 9 C -0.029 4.029 10 C -0.112 4.112 11 C -0.233 4.233 12 C 0.082 3.918 13 C -0.498 4.498 14 H 0.075 0.925 15 C 0.036 3.964 16 N -0.824 5.824 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.181 4.181 22 C -0.076 4.076 23 H 0.029 0.971 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.343 0.657 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 -0.829 -10.487 10.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 H 0.044 0.956 4 C -0.058 4.058 5 N -0.311 5.311 6 C -0.061 4.061 7 C -0.105 4.105 8 N -0.205 5.205 9 C -0.123 4.123 10 C -0.132 4.132 11 C -0.253 4.253 12 C 0.080 3.920 13 C -0.528 4.528 14 H 0.093 0.907 15 C -0.179 4.179 16 N -0.450 5.450 17 Si 0.804 3.196 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.182 1.182 21 C -0.201 4.201 22 C -0.095 4.095 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.160 0.840 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.569 -2.101 -10.798 11.296 hybrid contribution -0.322 1.822 1.899 2.651 sum 2.247 -0.279 -8.899 9.182 Atomic orbital electron populations 1.21646 0.94049 1.01861 1.01375 1.22465 0.96641 0.95091 0.91628 0.95605 1.22158 0.87377 1.01209 0.95061 1.60837 1.07707 1.23593 1.38972 1.22083 1.00266 0.98202 0.85568 1.22903 0.87668 0.99020 1.00902 1.59397 1.07650 1.53213 1.00279 1.18021 1.07497 0.91676 0.95152 1.20847 0.99980 0.95546 0.96824 1.20776 1.05845 0.99617 0.99106 1.17966 0.89128 0.92541 0.92392 1.19786 1.39684 0.95793 0.97493 0.90705 1.26760 0.95032 0.94516 1.01598 1.69909 1.34787 1.10471 1.29821 0.85188 0.78552 0.79587 0.76301 1.18597 1.19145 1.18240 1.20910 1.05059 0.96581 0.97543 1.20439 0.97328 0.98052 0.93696 0.95161 0.90094 0.92488 0.90553 0.88399 0.83965 0.90550 0.88463 0.95868 0.91954 0.88430 0.88915 0.90029 0.88161 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.88 71.98 0.64 -3.31 16 2 C 0.05 1.51 2.27 44.92 0.10 1.61 16 3 H 0.03 0.82 7.21 -2.39 -0.02 0.80 16 4 C 0.07 1.69 6.00 86.31 0.52 2.20 16 5 N -0.68 -15.33 6.91 -513.42 -3.55 -18.87 16 6 C 0.07 1.65 6.72 86.31 0.58 2.23 16 7 C 0.02 0.74 5.34 86.31 0.46 1.20 16 8 N -0.48 -17.14 4.48 -670.48 -3.01 -20.15 16 9 C -0.03 -1.25 3.27 38.67 0.13 -1.12 16 10 C -0.11 -5.02 8.54 22.15 0.19 -4.83 16 11 C -0.23 -11.74 9.74 22.48 0.22 -11.52 16 12 C 0.08 4.50 5.56 -21.27 -0.12 4.38 16 13 C -0.50 -27.19 9.03 23.38 0.21 -26.98 16 14 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 15 C 0.04 1.83 5.13 85.22 0.44 2.27 16 16 N -0.82 -43.49 11.03 21.82 0.24 -43.25 16 17 Si 0.98 38.31 29.59 68.60 2.03 40.34 16 18 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 19 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 C -0.18 -9.67 8.62 22.48 0.19 -9.48 16 22 C -0.08 -3.63 9.90 22.15 0.22 -3.41 16 23 H 0.03 1.09 7.36 -2.38 -0.02 1.07 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.34 6.95 8.89 -89.70 -0.80 6.16 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.02 0.74 7.40 -2.39 -0.02 0.72 16 32 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 33 H 0.10 3.96 7.01 -2.91 -0.02 3.94 16 34 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 35 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 36 H 0.10 5.61 6.25 -2.91 -0.02 5.59 16 37 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -58.51 295.76 -0.25 -58.76 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.26 Total: 29.93 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 3.78 Total: -46.76 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -6.31 Total: -82.27 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -58.51 -0.25 -58.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.364 kcal (2) G-P(sol) polarization free energy of solvation -58.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds