Wall clock time and date at job start Mon Mar 30 2020 04:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.50404 * 2 1 4 4 C 1.53050 * 109.49208 * 120.05723 * 2 1 3 5 5 N 1.46950 * 109.36490 * 178.37276 * 4 2 1 6 6 C 1.46955 * 110.88107 * 300.67550 * 5 4 2 7 7 C 1.53051 * 109.36414 * 59.32372 * 6 5 4 8 8 N 1.46960 * 109.48853 * 239.95167 * 2 1 3 9 9 C 1.38850 * 111.00140 * 56.84151 * 8 2 1 10 10 C 1.39573 * 119.83973 * 242.09838 * 9 8 2 11 11 C 1.36342 * 120.15991 * 179.97438 * 10 9 8 12 12 C 1.40884 * 119.83629 * 359.97438 * 11 10 9 13 13 C 1.41140 * 120.15850 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99450 * 26.66477 * 13 12 11 15 15 C 1.39854 * 120.00585 * 206.93819 * 13 12 11 16 16 N 1.30906 * 119.99976 * 13.69394 * 15 13 12 17 17 Si 1.86803 * 120.00282 * 193.69258 * 15 13 12 18 18 H 1.48500 * 109.46940 * 90.00026 * 17 15 13 19 19 H 1.48507 * 109.47090 * 209.99853 * 17 15 13 20 20 H 1.48494 * 109.46933 * 330.00373 * 17 15 13 21 21 C 1.40891 * 119.68947 * 0.27948 * 12 11 10 22 22 C 1.36339 * 119.83398 * 359.44121 * 21 12 11 23 23 H 1.09005 * 109.46784 * 173.11383 * 1 2 3 24 24 H 1.08999 * 109.47269 * 293.11587 * 1 2 3 25 25 H 1.09004 * 109.47712 * 53.11797 * 1 2 3 26 26 H 1.08999 * 109.48693 * 58.39889 * 4 2 1 27 27 H 1.09000 * 109.50439 * 298.34635 * 4 2 1 28 28 H 1.00897 * 111.00376 * 64.54753 * 5 4 2 29 29 H 1.08997 * 109.48892 * 299.35789 * 6 5 4 30 30 H 1.08996 * 109.49294 * 179.28945 * 6 5 4 31 31 H 1.09002 * 109.49440 * 181.63289 * 7 6 5 32 32 H 1.09000 * 109.50604 * 61.57335 * 7 6 5 33 33 H 1.08002 * 119.92182 * 0.02562 * 10 9 8 34 34 H 1.07995 * 120.08398 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00721 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.07743 * 179.70234 * 21 12 11 37 37 H 1.08003 * 119.91889 * 180.27584 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7226 1.2488 5 7 3.5096 -0.7552 1.2264 6 6 4.0000 -1.4489 0.0273 7 6 3.4893 -0.7263 -1.2215 8 7 2.0202 -0.6937 -1.1992 9 6 1.5179 -0.1077 -2.3534 10 6 0.7033 -0.8491 -3.2107 11 6 0.2061 -0.2800 -4.3456 12 6 0.5159 1.0598 -4.6516 13 6 0.0044 1.6559 -5.8242 14 1 -0.9190 1.2965 -6.2540 15 6 0.6960 2.7080 -6.4329 16 7 1.9320 2.9656 -6.0871 17 14 -0.1438 3.7458 -7.7395 18 1 -0.8261 4.8964 -7.0947 19 1 0.8708 4.2474 -8.7010 20 1 -1.1437 2.9187 -8.4614 21 6 1.3431 1.8004 -3.7842 22 6 1.8286 1.2202 -2.6500 23 1 -0.3633 -1.0203 -0.1232 24 1 -0.3634 0.4034 0.9451 25 1 -0.3635 0.6168 -0.8220 26 1 1.6544 -1.7418 1.2626 27 1 1.7022 -0.1933 2.1395 28 1 3.8929 0.1761 1.2875 29 1 3.6360 -2.4764 0.0272 30 1 5.0899 -1.4489 0.0272 31 1 3.8278 -1.2559 -2.1121 32 1 3.8755 0.2929 -1.2357 33 1 0.4657 -1.8757 -2.9742 34 1 -0.4244 -0.8547 -5.0079 35 1 2.4120 3.6950 -6.5095 36 1 1.5885 2.8265 -4.0152 37 1 2.4592 1.7880 -1.9819 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687744223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:37 Heat of formation + Delta-G solvation = 25.274843 kcal Electronic energy + Delta-G solvation = -17973.905719 eV Core-core repulsion = 15329.321850 eV Total energy + Delta-G solvation = -2644.583869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59501 -37.16335 -34.41966 -32.92934 -32.05784 -29.50722 -29.04336 -27.08189 -25.31750 -23.59785 -21.84546 -21.31441 -20.61052 -19.25141 -17.35521 -16.38129 -15.47078 -15.00820 -14.87504 -14.47671 -14.02512 -13.94389 -13.33720 -13.10974 -12.54450 -12.21520 -12.06293 -11.79163 -11.60742 -11.51688 -11.33443 -11.18814 -11.05559 -10.82958 -10.71133 -10.65882 -10.37540 -9.82338 -9.56399 -9.23854 -8.29365 -7.69071 -7.59285 -7.24479 -6.79062 -4.40321 2.65766 3.02982 3.06488 3.07241 3.13513 3.88630 4.35938 4.50451 4.54782 5.21914 5.41430 5.45191 5.47250 5.53027 5.67475 5.74048 5.84676 6.07296 6.09544 6.14863 6.19372 6.26818 6.36323 6.47025 6.66432 6.84511 7.02665 7.05323 7.06352 7.31934 7.38761 7.46067 7.58818 7.64027 7.98923 8.05296 8.19481 8.38602 8.61006 8.83559 8.96850 10.14080 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.043054 B = 0.005464 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.185397 B = 5122.842696 C = 5284.741517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.050 3.950 3 H 0.033 0.967 4 C 0.064 3.936 5 N -0.689 5.689 6 C 0.059 3.941 7 C 0.024 3.976 8 N -0.474 5.474 9 C -0.052 4.052 10 C -0.059 4.059 11 C -0.225 4.225 12 C 0.111 3.889 13 C -0.459 4.459 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.797 5.797 17 Si 0.911 3.089 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.155 4.155 22 C -0.122 4.122 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.334 0.666 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.280 0.720 36 H 0.117 0.883 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.235 -2.755 8.371 8.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.059 4.059 3 H 0.051 0.949 4 C -0.066 4.066 5 N -0.316 5.316 6 C -0.071 4.071 7 C -0.105 4.105 8 N -0.196 5.196 9 C -0.146 4.146 10 C -0.078 4.078 11 C -0.245 4.245 12 C 0.109 3.891 13 C -0.488 4.488 14 H 0.096 0.904 15 C -0.144 4.144 16 N -0.423 5.423 17 Si 0.736 3.264 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.175 4.175 22 C -0.142 4.142 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.332 -3.666 8.754 9.584 hybrid contribution -0.077 2.144 -1.520 2.630 sum 1.255 -1.522 7.234 7.498 Atomic orbital electron populations 1.21663 0.94074 1.02471 1.01039 1.22341 0.96595 0.95343 0.91611 0.94945 1.22174 0.87246 1.01396 0.95812 1.60827 1.08037 1.23013 1.39760 1.22121 0.98955 0.98851 0.87193 1.22830 0.89109 0.99030 0.99507 1.59338 1.06348 1.53145 1.00743 1.17907 1.08618 0.93064 0.95018 1.20119 0.96505 0.97373 0.93827 1.20708 1.08683 0.95552 0.99533 1.17678 0.89651 0.90194 0.91612 1.19581 1.07698 1.13661 1.07869 0.90383 1.25926 0.94184 0.96615 0.97675 1.69844 1.08798 1.25871 1.37739 0.86265 0.79888 0.80220 0.80076 1.19298 1.20279 1.18567 1.20977 1.02615 1.00315 0.93616 1.20821 1.00552 0.95109 0.97762 0.92190 0.93225 0.91894 0.90333 0.90971 0.84906 0.90329 0.90874 0.90560 0.95393 0.88975 0.88819 0.90903 0.86495 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.86 37.15 0.33 -1.80 16 2 C 0.05 0.81 2.29 -67.66 -0.16 0.66 16 3 H 0.03 0.57 7.31 -51.93 -0.38 0.19 16 4 C 0.06 0.86 6.00 -3.77 -0.02 0.84 16 5 N -0.69 -9.09 6.91 -113.65 -0.79 -9.88 16 6 C 0.06 0.80 6.72 -3.77 -0.03 0.77 16 7 C 0.02 0.40 5.32 -3.76 -0.02 0.38 16 8 N -0.47 -8.72 4.48 -163.26 -0.73 -9.45 16 9 C -0.05 -1.12 3.30 -83.69 -0.28 -1.40 16 10 C -0.06 -1.33 9.90 -39.77 -0.39 -1.73 16 11 C -0.22 -5.47 9.74 -39.26 -0.38 -5.85 16 12 C 0.11 2.93 5.57 -106.79 -0.59 2.34 16 13 C -0.46 -12.06 9.04 -37.88 -0.34 -12.40 16 14 H 0.08 1.97 7.88 -52.48 -0.41 1.56 16 15 C 0.07 1.82 5.21 -17.34 -0.09 1.73 16 16 N -0.80 -20.55 10.85 55.54 0.60 -19.95 16 17 Si 0.91 18.55 29.58 -169.99 -5.03 13.52 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 C -0.16 -4.01 8.62 -39.26 -0.34 -4.35 16 22 C -0.12 -2.85 8.54 -39.77 -0.34 -3.19 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 1.16 7.41 -51.93 -0.38 0.78 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.33 4.13 8.89 -39.29 -0.35 3.79 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.34 8.13 -51.93 -0.42 0.91 16 32 H 0.03 0.49 7.29 -51.93 -0.38 0.11 16 33 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 36 H 0.12 3.15 6.15 -52.49 -0.32 2.83 16 37 H 0.08 1.74 7.01 -52.48 -0.37 1.37 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -26.62 295.58 -9.68 -36.29 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.54 Total: 8.99 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.65 Total: -23.99 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.91 Total: -39.28 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.62 -9.68 -36.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.570 kcal (2) G-P(sol) polarization free energy of solvation -26.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds