Wall clock time and date at job start Mon Mar 30 2020 04:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.50404 * 2 1 4 4 C 1.53050 * 109.49208 * 120.05723 * 2 1 3 5 5 N 1.46950 * 109.36490 * 178.37276 * 4 2 1 6 6 C 1.46955 * 110.88107 * 300.67550 * 5 4 2 7 7 C 1.53051 * 109.36414 * 59.32372 * 6 5 4 8 8 N 1.46960 * 109.48853 * 239.95167 * 2 1 3 9 9 C 1.38850 * 111.00140 * 56.84151 * 8 2 1 10 10 C 1.39573 * 119.83973 * 242.09838 * 9 8 2 11 11 C 1.36342 * 120.15991 * 179.97438 * 10 9 8 12 12 C 1.40884 * 119.83629 * 359.97438 * 11 10 9 13 13 C 1.41140 * 120.15850 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99450 * 26.66477 * 13 12 11 15 15 C 1.39854 * 120.00585 * 206.93819 * 13 12 11 16 16 N 1.30906 * 119.99976 * 13.69394 * 15 13 12 17 17 Si 1.86803 * 120.00282 * 193.69258 * 15 13 12 18 18 H 1.48500 * 109.46940 * 90.00026 * 17 15 13 19 19 H 1.48507 * 109.47090 * 209.99853 * 17 15 13 20 20 H 1.48494 * 109.46933 * 330.00373 * 17 15 13 21 21 C 1.40891 * 119.68947 * 0.27948 * 12 11 10 22 22 C 1.36339 * 119.83398 * 359.44121 * 21 12 11 23 23 H 1.09005 * 109.46784 * 173.11383 * 1 2 3 24 24 H 1.08999 * 109.47269 * 293.11587 * 1 2 3 25 25 H 1.09004 * 109.47712 * 53.11797 * 1 2 3 26 26 H 1.08999 * 109.48693 * 58.39889 * 4 2 1 27 27 H 1.09000 * 109.50439 * 298.34635 * 4 2 1 28 28 H 1.00897 * 111.00376 * 64.54753 * 5 4 2 29 29 H 1.08997 * 109.48892 * 299.35789 * 6 5 4 30 30 H 1.08996 * 109.49294 * 179.28945 * 6 5 4 31 31 H 1.09002 * 109.49440 * 181.63289 * 7 6 5 32 32 H 1.09000 * 109.50604 * 61.57335 * 7 6 5 33 33 H 1.08002 * 119.92182 * 0.02562 * 10 9 8 34 34 H 1.07995 * 120.08398 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00721 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.07743 * 179.70234 * 21 12 11 37 37 H 1.08003 * 119.91889 * 180.27584 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7226 1.2488 5 7 3.5096 -0.7552 1.2264 6 6 4.0000 -1.4489 0.0273 7 6 3.4893 -0.7263 -1.2215 8 7 2.0202 -0.6937 -1.1992 9 6 1.5179 -0.1077 -2.3534 10 6 0.7033 -0.8491 -3.2107 11 6 0.2061 -0.2800 -4.3456 12 6 0.5159 1.0598 -4.6516 13 6 0.0044 1.6559 -5.8242 14 1 -0.9190 1.2965 -6.2540 15 6 0.6960 2.7080 -6.4329 16 7 1.9320 2.9656 -6.0871 17 14 -0.1438 3.7458 -7.7395 18 1 -0.8261 4.8964 -7.0947 19 1 0.8708 4.2474 -8.7010 20 1 -1.1437 2.9187 -8.4614 21 6 1.3431 1.8004 -3.7842 22 6 1.8286 1.2202 -2.6500 23 1 -0.3633 -1.0203 -0.1232 24 1 -0.3634 0.4034 0.9451 25 1 -0.3635 0.6168 -0.8220 26 1 1.6544 -1.7418 1.2626 27 1 1.7022 -0.1933 2.1395 28 1 3.8929 0.1761 1.2875 29 1 3.6360 -2.4764 0.0272 30 1 5.0899 -1.4489 0.0272 31 1 3.8278 -1.2559 -2.1121 32 1 3.8755 0.2929 -1.2357 33 1 0.4657 -1.8757 -2.9742 34 1 -0.4244 -0.8547 -5.0079 35 1 2.4120 3.6950 -6.5095 36 1 1.5885 2.8265 -4.0152 37 1 2.4592 1.7880 -1.9819 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687744223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:36 Heat of formation + Delta-G solvation = 8.675684 kcal Electronic energy + Delta-G solvation = -17974.625513 eV Core-core repulsion = 15329.321850 eV Total energy + Delta-G solvation = -2645.303663 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.07799 -38.84910 -36.02984 -34.54830 -33.38144 -31.41276 -30.81691 -28.44257 -26.89564 -25.10075 -23.13080 -23.09357 -22.30179 -20.73226 -19.27924 -17.87255 -17.17114 -16.35917 -16.27777 -15.78664 -15.67848 -15.53464 -14.82990 -14.74676 -14.16619 -13.94684 -13.61771 -13.37740 -13.10056 -12.87275 -12.82056 -12.72867 -12.55037 -12.42090 -12.09003 -11.99943 -11.84610 -11.61926 -11.45515 -11.07969 -9.51823 -9.51108 -9.16945 -9.14449 -8.65054 -6.37180 0.83947 1.13168 1.36027 1.47560 1.49708 2.18154 2.67603 3.00488 3.36586 3.65756 3.97843 4.18163 4.19730 4.23153 4.30652 4.36019 4.52002 4.58120 4.63487 4.81753 4.87190 4.94345 4.96456 5.08635 5.11167 5.15732 5.25006 5.34752 5.41413 5.54442 5.69115 5.94181 6.04935 6.12631 6.24299 6.29117 6.41841 6.53186 6.73345 6.89505 7.08337 8.30374 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.043054 B = 0.005464 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.185397 B = 5122.842696 C = 5284.741517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.049 3.951 3 H 0.020 0.980 4 C 0.073 3.927 5 N -0.684 5.684 6 C 0.070 3.930 7 C 0.023 3.977 8 N -0.479 5.479 9 C -0.029 4.029 10 C -0.065 4.065 11 C -0.233 4.233 12 C 0.079 3.921 13 C -0.495 4.495 14 H 0.077 0.923 15 C 0.032 3.968 16 N -0.831 5.831 17 Si 0.985 3.015 18 H -0.262 1.262 19 H -0.268 1.268 20 H -0.257 1.257 21 C -0.176 4.176 22 C -0.125 4.125 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.341 0.659 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.287 0.713 36 H 0.098 0.902 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -3.353 9.775 10.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.060 4.060 3 H 0.038 0.962 4 C -0.057 4.057 5 N -0.311 5.311 6 C -0.060 4.060 7 C -0.105 4.105 8 N -0.201 5.201 9 C -0.124 4.124 10 C -0.084 4.084 11 C -0.253 4.253 12 C 0.077 3.923 13 C -0.525 4.525 14 H 0.095 0.905 15 C -0.182 4.182 16 N -0.458 5.458 17 Si 0.806 3.194 18 H -0.187 1.187 19 H -0.193 1.193 20 H -0.180 1.180 21 C -0.196 4.196 22 C -0.146 4.146 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.159 0.841 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.491 -4.277 10.183 11.145 hybrid contribution -0.070 2.241 -1.809 2.881 sum 1.420 -2.036 8.374 8.735 Atomic orbital electron populations 1.21635 0.93830 1.02009 1.01343 1.22471 0.96825 0.94882 0.91798 0.96242 1.22159 0.87323 1.01320 0.94938 1.60843 1.07782 1.23520 1.39003 1.22085 1.00223 0.98289 0.85445 1.22905 0.87794 0.98796 1.01052 1.59455 1.07540 1.52849 1.00237 1.18066 1.06599 0.92079 0.95608 1.20363 0.96289 0.98358 0.93358 1.20897 1.08912 0.95087 1.00415 1.17997 0.90699 0.91295 0.92327 1.19822 1.08353 1.15575 1.08736 0.90464 1.26789 0.94500 0.97190 0.99722 1.69906 1.10085 1.26615 1.39162 0.85151 0.78828 0.78254 0.77168 1.18710 1.19278 1.18040 1.20907 1.04018 0.99790 0.94884 1.20941 1.00457 0.96032 0.97143 0.92036 0.90196 0.95276 0.90188 0.88533 0.84129 0.90166 0.88598 0.91734 0.96465 0.86879 0.88080 0.90253 0.88391 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.86 71.98 0.64 -3.26 16 2 C 0.05 1.50 2.29 44.92 0.10 1.60 16 3 H 0.02 0.66 7.31 -2.38 -0.02 0.64 16 4 C 0.07 1.72 6.00 86.31 0.52 2.24 16 5 N -0.68 -15.72 6.91 -513.46 -3.55 -19.27 16 6 C 0.07 1.69 6.72 86.31 0.58 2.27 16 7 C 0.02 0.74 5.32 86.31 0.46 1.20 16 8 N -0.48 -16.96 4.48 -670.43 -3.01 -19.97 16 9 C -0.03 -1.25 3.30 38.67 0.13 -1.12 16 10 C -0.06 -2.91 9.90 22.15 0.22 -2.69 16 11 C -0.23 -11.59 9.74 22.48 0.22 -11.37 16 12 C 0.08 4.33 5.57 -21.27 -0.12 4.21 16 13 C -0.50 -26.98 9.04 23.37 0.21 -26.77 16 14 H 0.08 4.04 7.88 -2.91 -0.02 4.02 16 15 C 0.03 1.62 5.21 85.22 0.44 2.07 16 16 N -0.83 -44.22 10.85 21.81 0.24 -43.98 16 17 Si 0.99 38.51 29.58 68.60 2.03 40.54 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 21 C -0.18 -9.47 8.62 22.48 0.19 -9.28 16 22 C -0.13 -5.97 8.54 22.15 0.19 -5.78 16 23 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.03 1.05 7.41 -2.38 -0.02 1.03 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.34 7.33 8.89 -89.70 -0.80 6.54 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 32 H 0.02 0.59 7.29 -2.39 -0.02 0.57 16 33 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 34 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 35 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 36 H 0.10 5.57 6.15 -2.91 -0.02 5.55 16 37 H 0.09 3.87 7.01 -2.91 -0.02 3.85 16 Total: -1.00 -58.66 295.58 -0.25 -58.90 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.26 Total: 30.46 kcal Atomic # 6 Polarization: -50.47 SS G_CDS: 3.78 Total: -46.68 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -6.32 Total: -83.22 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -58.66 -0.25 -58.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.580 kcal (2) G-P(sol) polarization free energy of solvation -58.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds