Wall clock time and date at job start Mon Mar 30 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.50524 * 2 1 4 4 C 1.53053 * 109.48544 * 120.05212 * 2 1 3 5 5 N 1.46955 * 109.36118 * 178.37074 * 4 2 1 6 6 C 1.39685 * 110.99783 * 176.80820 * 5 4 2 7 7 C 1.39332 * 119.94976 * 359.97438 * 6 5 4 8 8 C 1.38482 * 120.42062 * 180.02562 * 7 6 5 9 9 C 1.37695 * 120.32519 * 359.75434 * 8 7 6 10 10 C 1.40745 * 119.89237 * 0.51822 * 9 8 7 11 11 C 1.41407 * 120.20970 * 179.73716 * 10 9 8 12 12 H 1.07998 * 120.00069 * 155.51215 * 11 10 9 13 13 C 1.39937 * 119.99659 * 335.52160 * 11 10 9 14 14 N 1.30821 * 119.99980 * 341.98913 * 13 11 10 15 15 Si 1.86804 * 119.99819 * 162.27007 * 13 11 10 16 16 H 1.48502 * 109.46971 * 89.99759 * 15 13 11 17 17 H 1.48496 * 109.46851 * 209.99791 * 15 13 11 18 18 H 1.48504 * 109.46934 * 329.99770 * 15 13 11 19 19 C 1.38282 * 119.95004 * 179.97438 * 6 5 4 20 20 C 1.46956 * 110.88204 * 300.67602 * 5 4 2 21 21 C 1.53053 * 109.36046 * 59.32159 * 20 5 4 22 22 N 1.46951 * 109.48936 * 239.93987 * 2 1 3 23 23 H 1.08994 * 109.47355 * 299.94892 * 1 2 3 24 24 H 1.08999 * 109.46725 * 59.95124 * 1 2 3 25 25 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.49083 * 58.40445 * 4 2 1 27 27 H 1.08998 * 109.50441 * 298.34376 * 4 2 1 28 28 H 1.07998 * 119.79077 * 0.02562 * 7 6 5 29 29 H 1.07997 * 119.83678 * 180.02562 * 8 7 6 30 30 H 1.08001 * 120.05341 * 180.26222 * 9 8 7 31 31 H 0.97002 * 120.00273 * 180.02562 * 14 13 11 32 32 H 1.08005 * 120.16204 * 0.02562 * 19 6 5 33 33 H 1.08999 * 109.49088 * 179.28737 * 20 5 4 34 34 H 1.08993 * 109.48908 * 299.35580 * 20 5 4 35 35 H 1.09004 * 109.48463 * 181.63085 * 21 20 5 36 36 H 1.09000 * 109.48839 * 61.57112 * 21 20 5 37 37 H 1.00904 * 111.00105 * 56.84855 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7226 1.2489 5 7 3.5096 -0.7552 1.2266 6 6 4.0149 -1.3445 2.3878 7 6 3.1415 -1.8043 3.3712 8 6 3.6318 -2.3897 4.5265 9 6 4.9890 -2.5283 4.7137 10 6 5.8836 -2.0633 3.7316 11 6 7.2787 -2.1972 3.9194 12 1 7.9386 -2.2227 3.0649 13 6 7.8042 -2.2968 5.2126 14 7 7.0875 -1.9212 6.2406 15 14 9.5319 -2.9586 5.4702 16 1 10.5032 -1.8360 5.4297 17 1 9.6113 -3.6346 6.7900 18 1 9.8547 -3.9314 4.3955 19 6 5.3812 -1.4708 2.5597 20 6 4.0000 -1.4491 0.0276 21 6 3.4894 -0.7265 -1.2213 22 7 2.0203 -0.6939 -1.1990 23 1 -0.3634 0.5130 0.8904 24 1 -0.3633 0.5146 -0.8896 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6544 -1.7417 1.2628 27 1 1.7022 -0.1932 2.1395 28 1 2.0753 -1.7036 3.2317 29 1 2.9463 -2.7432 5.2825 30 1 5.3664 -2.9893 5.6145 31 1 7.4519 -1.9899 7.1369 32 1 6.0592 -1.1143 1.7982 33 1 5.0900 -1.4491 0.0276 34 1 3.6361 -2.4765 0.0276 35 1 3.8279 -1.2563 -2.1118 36 1 3.8756 0.2926 -1.2353 37 1 1.6554 -0.2682 -2.0378 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687744625.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:40 Heat of formation + Delta-G solvation = 26.670158 kcal Electronic energy + Delta-G solvation = -17711.642082 eV Core-core repulsion = 15067.118719 eV Total energy + Delta-G solvation = -2644.523364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.47938 -37.13274 -34.62795 -33.04747 -32.15400 -29.85367 -28.34056 -27.21531 -25.18754 -24.58494 -22.35063 -20.53815 -20.05500 -19.31721 -17.39479 -16.31403 -15.43695 -14.99345 -14.79810 -14.62697 -14.57759 -13.86211 -13.47657 -13.00818 -12.96202 -12.38629 -12.26506 -11.97410 -11.74126 -11.41749 -11.14087 -11.11228 -10.96195 -10.85574 -10.60973 -10.51696 -10.29171 -9.76913 -9.44223 -9.10794 -8.67549 -8.35273 -7.43947 -6.76858 -6.63696 -4.33874 2.80693 3.01283 3.08546 3.12604 3.23969 3.95170 4.19566 4.39130 4.68205 4.98637 5.15585 5.29617 5.44300 5.54654 5.63862 5.70233 5.73480 5.79361 5.92752 6.07017 6.19292 6.23279 6.29491 6.36573 6.46484 6.88014 6.97625 7.05928 7.07908 7.17675 7.29357 7.40276 7.61235 7.80322 7.99232 8.13780 8.16139 8.42318 8.70328 8.93679 9.02347 10.21661 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042548 B = 0.005277 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.918501 B = 5305.042557 C = 5821.208195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.044 0.956 4 C 0.066 3.934 5 N -0.492 5.492 6 C 0.121 3.879 7 C -0.280 4.280 8 C -0.089 4.089 9 C -0.178 4.178 10 C 0.125 3.875 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.793 5.793 15 Si 0.906 3.094 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.235 4.235 20 C 0.062 3.938 21 C 0.059 3.941 22 N -0.688 5.688 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.280 0.720 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 1.758 -9.162 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 H 0.062 0.938 4 C -0.062 4.062 5 N -0.209 5.209 6 C 0.026 3.974 7 C -0.302 4.302 8 C -0.108 4.108 9 C -0.198 4.198 10 C 0.122 3.878 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.140 4.140 14 N -0.418 5.418 15 Si 0.730 3.270 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.185 1.185 19 C -0.257 4.257 20 C -0.064 4.064 21 C -0.070 4.070 22 N -0.320 5.320 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.933 1.670 -8.692 11.243 hybrid contribution 0.712 0.041 0.122 0.723 sum -6.221 1.711 -8.570 10.728 Atomic orbital electron populations 1.21769 0.94259 1.02513 1.01554 1.21601 0.94759 0.95874 0.90597 0.93797 1.22208 0.87689 0.99674 0.96635 1.59382 1.07878 1.51622 1.02023 1.18452 0.93662 0.95270 0.90017 1.20472 0.96666 1.14298 0.98751 1.20530 0.95483 0.99073 0.95726 1.21296 0.91470 1.05459 1.01561 1.17452 0.93331 0.87030 0.90017 1.19536 0.92443 1.44675 0.92623 0.90529 1.25893 0.99791 0.92634 0.95709 1.69841 1.38154 1.33655 1.00130 0.86355 0.82088 0.79945 0.78581 1.19522 1.20116 1.18472 1.20560 0.91740 1.11455 1.01957 1.22201 1.00350 0.95713 0.88181 1.22029 0.87431 0.99457 0.98113 1.60568 1.08681 1.58161 1.04543 0.91969 0.92805 0.91828 0.93580 0.90180 0.89020 0.89491 0.86573 0.90940 0.88811 0.89777 0.93887 0.90458 0.94456 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.46 37.16 0.35 -1.18 16 2 C 0.08 1.10 3.20 -67.65 -0.22 0.89 16 3 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.07 1.11 3.57 -3.77 -0.01 1.10 16 5 N -0.49 -9.64 4.75 -171.02 -0.81 -10.45 16 6 C 0.12 2.81 5.63 -83.86 -0.47 2.34 16 7 C -0.28 -6.47 8.83 -39.08 -0.35 -6.82 16 8 C -0.09 -2.15 10.02 -39.69 -0.40 -2.55 16 9 C -0.18 -4.74 8.70 -38.83 -0.34 -5.08 16 10 C 0.12 3.39 5.57 -106.85 -0.60 2.80 16 11 C -0.46 -12.46 9.05 -37.74 -0.34 -12.81 16 12 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 13 C 0.08 1.97 5.13 -17.35 -0.09 1.88 16 14 N -0.79 -20.78 10.96 55.55 0.61 -20.17 16 15 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 17 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 C -0.24 -5.94 8.93 -38.67 -0.35 -6.29 16 20 C 0.06 1.07 5.38 -3.77 -0.02 1.05 16 21 C 0.06 0.80 6.72 -3.77 -0.03 0.78 16 22 N -0.69 -8.82 6.55 -106.58 -0.70 -9.52 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.82 7.58 -51.93 -0.39 0.42 16 27 H 0.08 1.37 7.16 -51.93 -0.37 1.00 16 28 H 0.09 1.90 5.78 -52.49 -0.30 1.60 16 29 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 31 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 32 H 0.09 2.28 7.17 -52.48 -0.38 1.90 16 33 H 0.08 1.48 6.81 -51.93 -0.35 1.12 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.34 3.48 8.83 -39.29 -0.35 3.13 16 LS Contribution 294.09 15.07 4.43 4.43 Total: -1.00 -28.33 294.09 -9.75 -38.07 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.40 Total: 7.76 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -2.85 Total: -23.89 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: -0.90 Total: -40.15 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.33 -9.75 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744625.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.745 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds