Wall clock time and date at job start Mon Mar 30 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.50524 * 2 1 4 4 C 1.53053 * 109.48544 * 120.05212 * 2 1 3 5 5 N 1.46955 * 109.36118 * 178.37074 * 4 2 1 6 6 C 1.39685 * 110.99783 * 176.80820 * 5 4 2 7 7 C 1.39332 * 119.94976 * 359.97438 * 6 5 4 8 8 C 1.38482 * 120.42062 * 180.02562 * 7 6 5 9 9 C 1.37695 * 120.32519 * 359.75434 * 8 7 6 10 10 C 1.40745 * 119.89237 * 0.51822 * 9 8 7 11 11 C 1.41407 * 120.20970 * 179.73716 * 10 9 8 12 12 H 1.07998 * 120.00069 * 155.51215 * 11 10 9 13 13 C 1.39937 * 119.99659 * 335.52160 * 11 10 9 14 14 N 1.30821 * 119.99980 * 341.98913 * 13 11 10 15 15 Si 1.86804 * 119.99819 * 162.27007 * 13 11 10 16 16 H 1.48502 * 109.46971 * 89.99759 * 15 13 11 17 17 H 1.48496 * 109.46851 * 209.99791 * 15 13 11 18 18 H 1.48504 * 109.46934 * 329.99770 * 15 13 11 19 19 C 1.38282 * 119.95004 * 179.97438 * 6 5 4 20 20 C 1.46956 * 110.88204 * 300.67602 * 5 4 2 21 21 C 1.53053 * 109.36046 * 59.32159 * 20 5 4 22 22 N 1.46951 * 109.48936 * 239.93987 * 2 1 3 23 23 H 1.08994 * 109.47355 * 299.94892 * 1 2 3 24 24 H 1.08999 * 109.46725 * 59.95124 * 1 2 3 25 25 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.49083 * 58.40445 * 4 2 1 27 27 H 1.08998 * 109.50441 * 298.34376 * 4 2 1 28 28 H 1.07998 * 119.79077 * 0.02562 * 7 6 5 29 29 H 1.07997 * 119.83678 * 180.02562 * 8 7 6 30 30 H 1.08001 * 120.05341 * 180.26222 * 9 8 7 31 31 H 0.97002 * 120.00273 * 180.02562 * 14 13 11 32 32 H 1.08005 * 120.16204 * 0.02562 * 19 6 5 33 33 H 1.08999 * 109.49088 * 179.28737 * 20 5 4 34 34 H 1.08993 * 109.48908 * 299.35580 * 20 5 4 35 35 H 1.09004 * 109.48463 * 181.63085 * 21 20 5 36 36 H 1.09000 * 109.48839 * 61.57112 * 21 20 5 37 37 H 1.00904 * 111.00105 * 56.84855 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7226 1.2489 5 7 3.5096 -0.7552 1.2266 6 6 4.0149 -1.3445 2.3878 7 6 3.1415 -1.8043 3.3712 8 6 3.6318 -2.3897 4.5265 9 6 4.9890 -2.5283 4.7137 10 6 5.8836 -2.0633 3.7316 11 6 7.2787 -2.1972 3.9194 12 1 7.9386 -2.2227 3.0649 13 6 7.8042 -2.2968 5.2126 14 7 7.0875 -1.9212 6.2406 15 14 9.5319 -2.9586 5.4702 16 1 10.5032 -1.8360 5.4297 17 1 9.6113 -3.6346 6.7900 18 1 9.8547 -3.9314 4.3955 19 6 5.3812 -1.4708 2.5597 20 6 4.0000 -1.4491 0.0276 21 6 3.4894 -0.7265 -1.2213 22 7 2.0203 -0.6939 -1.1990 23 1 -0.3634 0.5130 0.8904 24 1 -0.3633 0.5146 -0.8896 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6544 -1.7417 1.2628 27 1 1.7022 -0.1932 2.1395 28 1 2.0753 -1.7036 3.2317 29 1 2.9463 -2.7432 5.2825 30 1 5.3664 -2.9893 5.6145 31 1 7.4519 -1.9899 7.1369 32 1 6.0592 -1.1143 1.7982 33 1 5.0900 -1.4491 0.0276 34 1 3.6361 -2.4765 0.0276 35 1 3.8279 -1.2563 -2.1118 36 1 3.8756 0.2926 -1.2353 37 1 1.6554 -0.2682 -2.0378 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687744625.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:40 Heat of formation + Delta-G solvation = 8.431275 kcal Electronic energy + Delta-G solvation = -17712.432980 eV Core-core repulsion = 15067.118719 eV Total energy + Delta-G solvation = -2645.314261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97543 -38.78101 -36.23378 -34.78814 -33.35346 -31.75372 -30.06672 -28.44845 -27.02265 -26.05980 -23.69868 -22.27879 -21.78591 -20.67458 -19.18854 -17.79312 -17.12399 -16.47767 -16.29860 -16.19434 -15.94728 -15.30733 -14.81499 -14.74187 -14.58230 -14.07631 -13.65226 -13.31546 -13.01133 -12.85070 -12.82789 -12.73654 -12.55390 -12.21683 -12.10670 -11.93913 -11.79092 -11.54514 -11.30534 -11.01594 -10.34269 -9.45080 -9.41528 -8.66610 -8.46099 -6.36994 0.96602 1.07800 1.37947 1.49143 1.54838 2.20888 2.67572 2.98682 3.17791 3.69821 3.87577 4.00388 4.13287 4.28571 4.31909 4.40335 4.52126 4.59893 4.66262 4.77816 4.80393 4.90460 5.02105 5.04525 5.08077 5.09291 5.15568 5.31290 5.34745 5.47206 5.76141 5.90121 5.96854 6.07471 6.16867 6.32411 6.49195 6.54592 6.76014 6.94370 7.05644 8.33059 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042548 B = 0.005277 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.918501 B = 5305.042557 C = 5821.208195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.041 0.959 4 C 0.064 3.936 5 N -0.500 5.500 6 C 0.127 3.873 7 C -0.283 4.283 8 C -0.089 4.089 9 C -0.207 4.207 10 C 0.097 3.903 11 C -0.500 4.500 12 H 0.074 0.926 13 C 0.037 3.963 14 N -0.824 5.824 15 Si 0.983 3.017 16 H -0.262 1.262 17 H -0.265 1.265 18 H -0.259 1.259 19 C -0.256 4.256 20 C 0.061 3.939 21 C 0.068 3.932 22 N -0.688 5.688 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.289 0.711 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.104 0.896 36 H 0.038 0.962 37 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.898 2.068 -10.422 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.059 0.941 4 C -0.063 4.063 5 N -0.217 5.217 6 C 0.031 3.969 7 C -0.305 4.305 8 C -0.108 4.108 9 C -0.227 4.227 10 C 0.094 3.906 11 C -0.530 4.530 12 H 0.092 0.908 13 C -0.178 4.178 14 N -0.449 5.449 15 Si 0.803 3.197 16 H -0.186 1.186 17 H -0.189 1.189 18 H -0.183 1.183 19 C -0.277 4.277 20 C -0.065 4.065 21 C -0.062 4.062 22 N -0.322 5.322 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.122 0.878 36 H 0.056 0.944 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.813 1.995 -9.985 12.834 hybrid contribution 0.861 -0.004 0.455 0.974 sum -6.952 1.991 -9.530 11.963 Atomic orbital electron populations 1.21725 0.91808 1.02784 1.03051 1.21554 0.96563 0.94943 0.89259 0.94119 1.22316 0.85715 0.99665 0.98650 1.59365 1.09737 1.51108 1.01448 1.18665 0.93054 0.93758 0.91426 1.20802 0.98063 1.13434 0.98192 1.20828 0.94989 0.98378 0.96634 1.21255 0.92634 1.07379 1.01473 1.17813 0.94050 0.87704 0.91006 1.19803 0.92727 1.46801 0.93634 0.90756 1.26778 1.04227 0.92063 0.94774 1.69892 1.40253 1.33977 1.00818 0.85202 0.76379 0.79305 0.78794 1.18626 1.18877 1.18250 1.20639 0.92948 1.12451 1.01711 1.22253 0.99914 0.95507 0.88845 1.21958 0.88036 0.99269 0.96900 1.60517 1.08061 1.58445 1.05228 0.91324 0.90549 0.92127 0.94379 0.90592 0.86404 0.87069 0.88095 0.90085 0.89006 0.90861 0.95060 0.87834 0.94354 0.82296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.46 71.98 0.68 -1.79 16 2 C 0.09 2.13 3.20 44.93 0.14 2.27 16 3 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.06 2.06 3.57 86.31 0.31 2.37 16 5 N -0.50 -19.33 4.75 -694.99 -3.30 -22.63 16 6 C 0.13 5.96 5.63 38.16 0.21 6.18 16 7 C -0.28 -13.01 8.83 22.59 0.20 -12.81 16 8 C -0.09 -4.36 10.02 22.20 0.22 -4.14 16 9 C -0.21 -11.43 8.70 22.75 0.20 -11.23 16 10 C 0.10 5.51 5.57 -21.31 -0.12 5.39 16 11 C -0.50 -27.98 9.05 23.46 0.21 -27.77 16 12 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 13 C 0.04 1.90 5.13 85.26 0.44 2.34 16 14 N -0.82 -44.25 10.96 21.82 0.24 -44.02 16 15 Si 0.98 38.92 29.59 68.60 2.03 40.95 16 16 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 17 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 19 C -0.26 -13.35 8.93 22.86 0.20 -13.15 16 20 C 0.06 2.06 5.38 86.31 0.46 2.53 16 21 C 0.07 1.69 6.72 86.31 0.58 2.27 16 22 N -0.69 -15.61 6.55 -491.12 -3.21 -18.82 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 1.29 7.58 -2.39 -0.02 1.27 16 27 H 0.08 2.48 7.16 -2.39 -0.02 2.47 16 28 H 0.12 4.72 5.78 -2.91 -0.02 4.71 16 29 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 30 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 31 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 32 H 0.09 4.67 7.17 -2.91 -0.02 4.65 16 33 H 0.07 2.60 6.81 -2.39 -0.02 2.59 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.36 6.00 8.83 -89.69 -0.79 5.20 16 Total: -1.00 -62.64 294.09 -0.23 -62.87 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.27 Total: 29.20 kcal Atomic # 6 Polarization: -51.30 SS G_CDS: 3.75 Total: -47.55 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -6.28 Total: -85.47 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -62.64 -0.23 -62.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744625.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.300 kcal (2) G-P(sol) polarization free energy of solvation -62.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds